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Genes within 1Mb (chr6:131088116:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 24794 sc-eQTL 1.30e-06 -0.278 0.0558 0.59 B L1
ENSG00000112282 MED23 -540126 sc-eQTL 8.52e-01 0.0121 0.0647 0.59 B L1
ENSG00000118507 AKAP7 -47351 sc-eQTL 1.41e-06 0.36 0.0725 0.59 B L1
ENSG00000164483 SAMD3 722691 sc-eQTL 5.76e-01 0.0378 0.0674 0.59 B L1
ENSG00000079819 EPB41L2 24794 sc-eQTL 8.57e-03 -0.204 0.077 0.59 CD4T L1
ENSG00000112282 MED23 -540126 sc-eQTL 4.09e-01 0.0419 0.0506 0.59 CD4T L1
ENSG00000118507 AKAP7 -47351 sc-eQTL 3.44e-04 0.24 0.066 0.59 CD4T L1
ENSG00000164483 SAMD3 722691 sc-eQTL 9.94e-01 -0.000449 0.0596 0.59 CD4T L1
ENSG00000112282 MED23 -540126 sc-eQTL 8.37e-01 0.0131 0.0636 0.59 CD8T L1
ENSG00000118507 AKAP7 -47351 sc-eQTL 8.43e-04 0.239 0.0705 0.59 CD8T L1
ENSG00000164483 SAMD3 722691 sc-eQTL 6.49e-01 0.0151 0.0332 0.59 CD8T L1
ENSG00000079819 EPB41L2 24794 sc-eQTL 3.50e-04 -0.23 0.0631 0.588 DC L1
ENSG00000112282 MED23 -540126 sc-eQTL 4.99e-01 -0.0567 0.0837 0.588 DC L1
ENSG00000118507 AKAP7 -47351 sc-eQTL 7.20e-01 -0.0295 0.0824 0.588 DC L1
ENSG00000079819 EPB41L2 24794 sc-eQTL 1.38e-09 -0.421 0.0663 0.59 Mono L1
ENSG00000112282 MED23 -540126 sc-eQTL 1.71e-03 0.218 0.0687 0.59 Mono L1
ENSG00000118507 AKAP7 -47351 sc-eQTL 2.78e-01 -0.0758 0.0696 0.59 Mono L1
ENSG00000112282 MED23 -540126 sc-eQTL 2.11e-01 0.0738 0.0588 0.59 NK L1
ENSG00000118507 AKAP7 -47351 sc-eQTL 3.13e-02 0.151 0.0698 0.59 NK L1
ENSG00000164483 SAMD3 722691 sc-eQTL 3.71e-01 0.0352 0.0393 0.59 NK L1
ENSG00000227678 AL355581.1 941937 sc-eQTL 7.23e-01 0.0285 0.0803 0.59 NK L1
ENSG00000079819 EPB41L2 24794 sc-eQTL 4.34e-01 -0.057 0.0727 0.59 Other_T L1
ENSG00000112282 MED23 -540126 sc-eQTL 3.50e-01 -0.0769 0.0822 0.59 Other_T L1
ENSG00000118507 AKAP7 -47351 sc-eQTL 1.22e-03 0.23 0.0702 0.59 Other_T L1
ENSG00000164483 SAMD3 722691 sc-eQTL 9.13e-01 0.00422 0.0384 0.59 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 24794 sc-eQTL 9.66e-01 0.00329 0.0777 0.587 B_Activated L2
ENSG00000112282 MED23 -540126 sc-eQTL 2.29e-01 0.11 0.0912 0.587 B_Activated L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 9.10e-01 -0.0103 0.0913 0.587 B_Activated L2
ENSG00000164483 SAMD3 722691 sc-eQTL 6.75e-01 0.0261 0.0623 0.587 B_Activated L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 3.62e-04 -0.292 0.0806 0.59 B_Intermediate L2
ENSG00000112282 MED23 -540126 sc-eQTL 6.54e-02 -0.147 0.0794 0.59 B_Intermediate L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 3.81e-02 0.168 0.0805 0.59 B_Intermediate L2
ENSG00000164483 SAMD3 722691 sc-eQTL 5.91e-01 -0.0369 0.0684 0.59 B_Intermediate L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 2.22e-01 -0.0954 0.0778 0.588 B_Memory L2
ENSG00000112282 MED23 -540126 sc-eQTL 5.93e-01 0.0438 0.0818 0.588 B_Memory L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 2.81e-01 0.0919 0.085 0.588 B_Memory L2
ENSG00000164483 SAMD3 722691 sc-eQTL 1.70e-01 0.106 0.0773 0.588 B_Memory L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 1.76e-05 -0.28 0.0636 0.59 B_Naive1 L2
ENSG00000112282 MED23 -540126 sc-eQTL 6.68e-01 0.0304 0.0707 0.59 B_Naive1 L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 6.52e-06 0.39 0.0843 0.59 B_Naive1 L2
ENSG00000164483 SAMD3 722691 sc-eQTL 5.31e-01 -0.0433 0.0691 0.59 B_Naive1 L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 2.60e-02 -0.169 0.0755 0.588 B_Naive2 L2
ENSG00000112282 MED23 -540126 sc-eQTL 2.07e-02 0.2 0.086 0.588 B_Naive2 L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 4.13e-03 0.26 0.0897 0.588 B_Naive2 L2
ENSG00000164483 SAMD3 722691 sc-eQTL 3.68e-01 -0.0534 0.0592 0.588 B_Naive2 L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 3.84e-03 -0.202 0.0691 0.591 CD4_CTL L2
ENSG00000112282 MED23 -540126 sc-eQTL 2.85e-01 0.0969 0.0903 0.591 CD4_CTL L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 5.76e-01 0.0486 0.0867 0.591 CD4_CTL L2
ENSG00000164483 SAMD3 722691 sc-eQTL 6.56e-02 0.105 0.0566 0.591 CD4_CTL L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 2.25e-02 -0.183 0.0797 0.59 CD4_Naive L2
ENSG00000112282 MED23 -540126 sc-eQTL 5.53e-01 0.0347 0.0585 0.59 CD4_Naive L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 1.11e-03 0.247 0.0746 0.59 CD4_Naive L2
ENSG00000164483 SAMD3 722691 sc-eQTL 8.04e-01 -0.0175 0.0704 0.59 CD4_Naive L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 1.63e-01 -0.115 0.0825 0.59 CD4_TCM L2
ENSG00000112282 MED23 -540126 sc-eQTL 1.63e-01 0.0887 0.0634 0.59 CD4_TCM L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 8.89e-02 0.125 0.0734 0.59 CD4_TCM L2
ENSG00000164483 SAMD3 722691 sc-eQTL 9.46e-01 0.00457 0.0674 0.59 CD4_TCM L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 6.85e-01 0.0356 0.0875 0.59 CD4_TEM L2
ENSG00000112282 MED23 -540126 sc-eQTL 9.36e-01 0.00649 0.0807 0.59 CD4_TEM L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 2.87e-02 0.193 0.0876 0.59 CD4_TEM L2
ENSG00000164483 SAMD3 722691 sc-eQTL 9.58e-02 0.0938 0.056 0.59 CD4_TEM L2
ENSG00000112282 MED23 -540126 sc-eQTL 1.79e-01 0.102 0.0754 0.59 CD8_CTL L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 4.33e-02 0.171 0.0839 0.59 CD8_CTL L2
ENSG00000164483 SAMD3 722691 sc-eQTL 2.48e-01 0.0622 0.0537 0.59 CD8_CTL L2
ENSG00000112282 MED23 -540126 sc-eQTL 8.16e-01 0.0166 0.0712 0.59 CD8_Naive L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 1.44e-02 0.195 0.0792 0.59 CD8_Naive L2
ENSG00000164483 SAMD3 722691 sc-eQTL 5.88e-01 -0.0387 0.0712 0.59 CD8_Naive L2
ENSG00000112282 MED23 -540126 sc-eQTL 5.49e-01 -0.053 0.0884 0.588 CD8_TCM L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 5.30e-01 0.0597 0.0949 0.588 CD8_TCM L2
ENSG00000164483 SAMD3 722691 sc-eQTL 4.33e-01 0.0635 0.0809 0.588 CD8_TCM L2
ENSG00000112282 MED23 -540126 sc-eQTL 1.27e-01 0.135 0.0881 0.587 CD8_TEM L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 7.85e-02 0.158 0.0894 0.587 CD8_TEM L2
ENSG00000164483 SAMD3 722691 sc-eQTL 7.83e-01 0.0177 0.0643 0.587 CD8_TEM L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 6.94e-01 -0.032 0.0812 0.587 MAIT L2
ENSG00000112282 MED23 -540126 sc-eQTL 9.48e-01 0.00577 0.0885 0.587 MAIT L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 1.62e-02 0.209 0.0862 0.587 MAIT L2
ENSG00000164483 SAMD3 722691 sc-eQTL 4.80e-01 0.0369 0.0521 0.587 MAIT L2
ENSG00000112282 MED23 -540126 sc-eQTL 5.50e-01 0.0544 0.0907 0.593 NK_CD56bright L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 7.31e-01 -0.0303 0.088 0.593 NK_CD56bright L2
ENSG00000164483 SAMD3 722691 sc-eQTL 8.68e-01 0.0116 0.0697 0.593 NK_CD56bright L2
ENSG00000227678 AL355581.1 941937 sc-eQTL 3.73e-01 0.072 0.0807 0.593 NK_CD56bright L2
ENSG00000112282 MED23 -540126 sc-eQTL 5.18e-01 0.0458 0.0708 0.591 NK_CD56dim L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 2.36e-02 0.169 0.0743 0.591 NK_CD56dim L2
ENSG00000164483 SAMD3 722691 sc-eQTL 5.51e-01 0.0245 0.041 0.591 NK_CD56dim L2
ENSG00000227678 AL355581.1 941937 sc-eQTL 6.40e-01 0.0388 0.0829 0.591 NK_CD56dim L2
ENSG00000112282 MED23 -540126 sc-eQTL 2.63e-01 -0.0974 0.0867 0.596 NK_HLA L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 3.16e-04 0.32 0.0872 0.596 NK_HLA L2
ENSG00000164483 SAMD3 722691 sc-eQTL 3.44e-01 0.0702 0.074 0.596 NK_HLA L2
ENSG00000227678 AL355581.1 941937 sc-eQTL 8.52e-02 0.141 0.0815 0.596 NK_HLA L2
ENSG00000112282 MED23 -540126 sc-eQTL 1.00e-01 0.128 0.0774 0.591 NK_cytokine L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 7.94e-02 0.138 0.0781 0.591 NK_cytokine L2
ENSG00000164483 SAMD3 722691 sc-eQTL 5.94e-02 0.0924 0.0487 0.591 NK_cytokine L2
ENSG00000227678 AL355581.1 941937 sc-eQTL 7.67e-01 0.0252 0.0849 0.591 NK_cytokine L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 9.90e-01 -0.00148 0.115 0.604 PB L2
ENSG00000112282 MED23 -540126 sc-eQTL 4.75e-01 -0.0776 0.108 0.604 PB L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 3.54e-01 -0.098 0.105 0.604 PB L2
ENSG00000164483 SAMD3 722691 sc-eQTL 8.06e-01 0.0247 0.1 0.604 PB L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 7.26e-01 -0.0269 0.0765 0.591 Pro_T L2
ENSG00000112282 MED23 -540126 sc-eQTL 9.05e-02 -0.15 0.0883 0.591 Pro_T L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 3.36e-01 0.0734 0.0761 0.591 Pro_T L2
ENSG00000164483 SAMD3 722691 sc-eQTL 1.95e-01 0.0637 0.0491 0.591 Pro_T L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 3.33e-02 -0.18 0.0839 0.59 Treg L2
ENSG00000112282 MED23 -540126 sc-eQTL 2.79e-01 -0.0944 0.087 0.59 Treg L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 1.91e-01 0.0984 0.0749 0.59 Treg L2
ENSG00000164483 SAMD3 722691 sc-eQTL 8.04e-02 -0.126 0.0719 0.59 Treg L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 4.94e-05 -0.297 0.0713 0.585 cDC L2
ENSG00000112282 MED23 -540126 sc-eQTL 4.78e-01 0.0681 0.0958 0.585 cDC L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 8.60e-01 -0.0165 0.0931 0.585 cDC L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 9.89e-08 -0.412 0.0747 0.59 cMono_IL1B L2
ENSG00000112282 MED23 -540126 sc-eQTL 1.30e-02 0.194 0.0773 0.59 cMono_IL1B L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 9.77e-01 -0.00221 0.0764 0.59 cMono_IL1B L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 1.13e-03 -0.266 0.0806 0.59 cMono_S100A L2
ENSG00000112282 MED23 -540126 sc-eQTL 4.07e-01 0.0681 0.0819 0.59 cMono_S100A L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 1.19e-01 -0.125 0.0799 0.59 cMono_S100A L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 3.66e-01 -0.085 0.0937 0.6 gdT L2
ENSG00000112282 MED23 -540126 sc-eQTL 2.10e-01 0.132 0.105 0.6 gdT L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 1.37e-01 0.163 0.109 0.6 gdT L2
ENSG00000164483 SAMD3 722691 sc-eQTL 5.44e-01 0.0509 0.0837 0.6 gdT L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 3.38e-04 -0.298 0.0816 0.591 intMono L2
ENSG00000112282 MED23 -540126 sc-eQTL 1.80e-01 0.121 0.0903 0.591 intMono L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 9.30e-01 0.0078 0.0885 0.591 intMono L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 3.14e-03 -0.229 0.0765 0.59 ncMono L2
ENSG00000112282 MED23 -540126 sc-eQTL 5.59e-01 0.0499 0.0851 0.59 ncMono L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 5.54e-01 0.049 0.0825 0.59 ncMono L2
ENSG00000079819 EPB41L2 24794 sc-eQTL 3.94e-01 0.0815 0.0952 0.596 pDC L2
ENSG00000112282 MED23 -540126 sc-eQTL 5.74e-01 -0.0543 0.0963 0.596 pDC L2
ENSG00000118507 AKAP7 -47351 sc-eQTL 1.59e-01 0.111 0.0782 0.596 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000079819 EPB41L2 24794 sc-eQTL 7.30e-03 -0.2 0.0736 0.59 B_Memory LOneK1K
ENSG00000112282 MED23 -540126 sc-eQTL 4.05e-01 -0.0613 0.0735 0.59 B_Memory LOneK1K
ENSG00000118507 AKAP7 -47351 sc-eQTL 4.08e-02 0.152 0.0741 0.59 B_Memory LOneK1K
ENSG00000164483 SAMD3 722691 sc-eQTL 3.83e-01 0.0651 0.0745 0.59 B_Memory LOneK1K
ENSG00000079819 EPB41L2 24794 sc-eQTL 3.72e-06 -0.285 0.0599 0.59 B_Naive LOneK1K
ENSG00000112282 MED23 -540126 sc-eQTL 1.90e-01 0.0912 0.0694 0.59 B_Naive LOneK1K
ENSG00000118507 AKAP7 -47351 sc-eQTL 9.20e-07 0.419 0.0829 0.59 B_Naive LOneK1K
ENSG00000164483 SAMD3 722691 sc-eQTL 1.95e-01 -0.0976 0.0751 0.59 B_Naive LOneK1K
ENSG00000079819 EPB41L2 24794 sc-eQTL 7.91e-10 -0.448 0.0696 0.59 CD14_Mono LOneK1K
ENSG00000112282 MED23 -540126 sc-eQTL 9.39e-03 0.189 0.0722 0.59 CD14_Mono LOneK1K
ENSG00000118507 AKAP7 -47351 sc-eQTL 3.14e-01 -0.0724 0.0718 0.59 CD14_Mono LOneK1K
ENSG00000079819 EPB41L2 24794 sc-eQTL 4.27e-04 -0.276 0.0772 0.588 CD16_Mono LOneK1K
ENSG00000112282 MED23 -540126 sc-eQTL 2.11e-01 0.101 0.0805 0.588 CD16_Mono LOneK1K
ENSG00000118507 AKAP7 -47351 sc-eQTL 9.64e-01 -0.00378 0.083 0.588 CD16_Mono LOneK1K
ENSG00000112282 MED23 -540126 sc-eQTL 3.78e-01 0.0556 0.063 0.591 NK_CD56dim LOneK1K
ENSG00000118507 AKAP7 -47351 sc-eQTL 5.55e-03 0.191 0.0683 0.591 NK_CD56dim LOneK1K
ENSG00000164483 SAMD3 722691 sc-eQTL 2.38e-01 0.0447 0.0377 0.591 NK_CD56dim LOneK1K
ENSG00000227678 AL355581.1 941937 sc-eQTL 7.30e-01 0.0282 0.0817 0.591 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000079819 EPB41L2 24794 eQTL 1.16e-59 -0.328 0.0187 0.0 0.0 0.385
ENSG00000118507 AKAP7 -47351 eQTL 0.000209 0.0779 0.0209 0.0 0.0 0.385

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000079819 EPB41L2 24794 1.24e-05 1.38e-05 2.45e-06 8.31e-06 2.48e-06 6.12e-06 1.85e-05 2.33e-06 1.31e-05 6.42e-06 1.8e-05 6.87e-06 2.46e-05 5.21e-06 4.18e-06 9e-06 7.77e-06 1.19e-05 3.79e-06 3.59e-06 6.85e-06 1.26e-05 1.37e-05 4.78e-06 2.42e-05 4.86e-06 7.44e-06 5.53e-06 1.54e-05 1.55e-05 8.7e-06 1.03e-06 1.42e-06 4.09e-06 5.98e-06 3.76e-06 1.76e-06 2.4e-06 2.81e-06 1.96e-06 1.36e-06 1.8e-05 1.63e-06 2.96e-07 1.17e-06 2.35e-06 2.15e-06 8.57e-07 7.09e-07
ENSG00000118507 AKAP7 -47351 7.86e-06 9.6e-06 1.25e-06 4.85e-06 2.38e-06 3.93e-06 1.02e-05 1.84e-06 8.22e-06 4.81e-06 1.15e-05 4.92e-06 1.35e-05 3.88e-06 2.19e-06 6.37e-06 3.97e-06 6.71e-06 2.67e-06 2.65e-06 4.64e-06 8.12e-06 7.38e-06 3.29e-06 1.3e-05 3.36e-06 4.51e-06 3.38e-06 9.57e-06 8.81e-06 4.81e-06 9.55e-07 1.25e-06 3.26e-06 3.75e-06 2.65e-06 1.75e-06 2.02e-06 2.12e-06 9.72e-07 9.75e-07 1.19e-05 1.22e-06 2.09e-07 6.84e-07 1.62e-06 1.27e-06 8.03e-07 4.49e-07