logo

Genes within 1Mb (chr6:129710348:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 171 sc-eQTL 1.86e-01 0.123 0.0925 0.162 B L1
ENSG00000164483 SAMD3 -655077 sc-eQTL 7.35e-01 0.0336 0.099 0.162 B L1
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 8.08e-01 -0.0236 0.0972 0.162 B L1
ENSG00000146376 ARHGAP18 171 sc-eQTL 9.87e-01 0.00139 0.0866 0.162 CD4T L1
ENSG00000164483 SAMD3 -655077 sc-eQTL 6.57e-01 0.0386 0.0867 0.162 CD4T L1
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 3.24e-01 0.0788 0.0798 0.162 CD4T L1
ENSG00000146376 ARHGAP18 171 sc-eQTL 3.89e-02 0.15 0.072 0.162 CD8T L1
ENSG00000164483 SAMD3 -655077 sc-eQTL 8.19e-01 0.0107 0.0468 0.162 CD8T L1
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 6.24e-01 0.0522 0.106 0.162 CD8T L1
ENSG00000146376 ARHGAP18 171 sc-eQTL 2.40e-01 -0.144 0.122 0.164 DC L1
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 1.17e-01 0.195 0.124 0.164 DC L1
ENSG00000146376 ARHGAP18 171 sc-eQTL 2.57e-01 -0.0819 0.0722 0.162 Mono L1
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 5.85e-01 -0.0581 0.106 0.162 Mono L1
ENSG00000146376 ARHGAP18 171 sc-eQTL 3.00e-01 0.102 0.0978 0.161 NK L1
ENSG00000164483 SAMD3 -655077 sc-eQTL 2.47e-01 0.0656 0.0565 0.161 NK L1
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 4.30e-01 0.0791 0.1 0.161 NK L1
ENSG00000227678 AL355581.1 -435831 sc-eQTL 4.85e-01 0.0807 0.115 0.161 NK L1
ENSG00000146376 ARHGAP18 171 sc-eQTL 2.67e-01 0.124 0.111 0.162 Other_T L1
ENSG00000164483 SAMD3 -655077 sc-eQTL 5.14e-01 0.036 0.0551 0.162 Other_T L1
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 1.51e-01 0.172 0.12 0.162 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 171 sc-eQTL 9.06e-01 0.0166 0.14 0.156 B_Activated L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 3.79e-01 0.0827 0.0937 0.156 B_Activated L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 4.92e-01 0.102 0.147 0.156 B_Activated L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 5.63e-01 -0.0702 0.121 0.163 B_Intermediate L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 8.50e-01 0.019 0.1 0.163 B_Intermediate L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 8.66e-01 0.0214 0.127 0.163 B_Intermediate L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 5.15e-01 -0.0795 0.122 0.164 B_Memory L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 1.44e-01 0.165 0.113 0.164 B_Memory L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 5.62e-01 0.0702 0.121 0.164 B_Memory L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 4.34e-01 0.0957 0.122 0.162 B_Naive1 L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 8.45e-01 -0.0195 0.1 0.162 B_Naive1 L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 8.59e-01 0.0209 0.118 0.162 B_Naive1 L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 2.48e-01 -0.153 0.132 0.163 B_Naive2 L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 6.07e-01 -0.0445 0.0865 0.163 B_Naive2 L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 5.12e-02 -0.246 0.125 0.163 B_Naive2 L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 3.50e-01 0.112 0.12 0.164 CD4_CTL L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 4.56e-01 -0.0599 0.0801 0.164 CD4_CTL L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 3.33e-01 -0.118 0.121 0.164 CD4_CTL L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 9.68e-01 -0.00414 0.104 0.162 CD4_Naive L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 3.35e-01 0.0982 0.102 0.162 CD4_Naive L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 5.92e-01 0.0468 0.0873 0.162 CD4_Naive L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 5.18e-02 0.222 0.113 0.162 CD4_TCM L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 8.92e-01 -0.0132 0.0971 0.162 CD4_TCM L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 2.13e-01 0.111 0.089 0.162 CD4_TCM L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 2.89e-01 -0.127 0.12 0.162 CD4_TEM L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 5.54e-01 -0.0476 0.0802 0.162 CD4_TEM L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 6.94e-01 0.0426 0.108 0.162 CD4_TEM L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 1.33e-02 0.287 0.115 0.162 CD8_CTL L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 7.50e-01 -0.0242 0.0759 0.162 CD8_CTL L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 7.15e-01 -0.0432 0.118 0.162 CD8_CTL L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 8.36e-01 0.0235 0.113 0.162 CD8_Naive L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 8.89e-01 0.0142 0.101 0.162 CD8_Naive L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 2.31e-01 0.117 0.0974 0.162 CD8_Naive L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 6.81e-01 -0.0505 0.123 0.167 CD8_TCM L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 5.34e-01 -0.071 0.114 0.167 CD8_TCM L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 4.56e-01 0.0994 0.133 0.167 CD8_TCM L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 8.08e-01 -0.0299 0.123 0.155 CD8_TEM L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 2.57e-01 -0.108 0.0952 0.155 CD8_TEM L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 9.67e-01 -0.00552 0.133 0.155 CD8_TEM L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 1.68e-01 0.161 0.116 0.16 MAIT L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 4.20e-01 0.0585 0.0725 0.16 MAIT L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 1.34e-02 0.283 0.114 0.16 MAIT L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 9.45e-01 -0.00795 0.116 0.162 NK_CD56bright L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 9.40e-01 0.0075 0.0999 0.162 NK_CD56bright L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 8.01e-01 0.0305 0.121 0.162 NK_CD56bright L2
ENSG00000227678 AL355581.1 -435831 sc-eQTL 1.23e-01 0.178 0.115 0.162 NK_CD56bright L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 4.00e-01 0.0918 0.109 0.162 NK_CD56dim L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 7.54e-01 0.0186 0.0593 0.162 NK_CD56dim L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 5.71e-01 0.0631 0.111 0.162 NK_CD56dim L2
ENSG00000227678 AL355581.1 -435831 sc-eQTL 7.05e-01 0.0454 0.12 0.162 NK_CD56dim L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 4.84e-02 -0.237 0.119 0.162 NK_HLA L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 5.30e-01 0.0665 0.106 0.162 NK_HLA L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 7.34e-01 -0.0424 0.124 0.162 NK_HLA L2
ENSG00000227678 AL355581.1 -435831 sc-eQTL 8.93e-01 0.0157 0.117 0.162 NK_HLA L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 3.23e-01 0.105 0.105 0.162 NK_cytokine L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 3.69e-01 0.0632 0.0701 0.162 NK_cytokine L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 6.90e-01 0.0457 0.115 0.162 NK_cytokine L2
ENSG00000227678 AL355581.1 -435831 sc-eQTL 9.12e-01 0.0134 0.121 0.162 NK_cytokine L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 9.79e-02 0.255 0.153 0.163 PB L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 7.72e-01 0.0408 0.141 0.163 PB L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 3.11e-01 -0.137 0.135 0.163 PB L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 5.44e-01 0.0736 0.121 0.163 Pro_T L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 1.73e-01 0.095 0.0695 0.163 Pro_T L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 4.51e-01 0.086 0.114 0.163 Pro_T L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 7.73e-01 -0.0337 0.116 0.162 Treg L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 8.18e-01 -0.0236 0.103 0.162 Treg L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 2.36e-01 -0.143 0.12 0.162 Treg L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 6.82e-01 -0.0555 0.135 0.161 cDC L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 9.31e-01 0.0114 0.131 0.161 cDC L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 3.68e-01 -0.0792 0.0877 0.162 cMono_IL1B L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 4.78e-01 -0.0857 0.12 0.162 cMono_IL1B L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 3.18e-01 -0.0995 0.0994 0.162 cMono_S100A L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 5.30e-01 0.0799 0.127 0.162 cMono_S100A L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 5.95e-01 0.0737 0.138 0.167 gdT L2
ENSG00000164483 SAMD3 -655077 sc-eQTL 5.69e-01 -0.0666 0.117 0.167 gdT L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 6.45e-01 0.0679 0.147 0.167 gdT L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 5.62e-01 0.063 0.108 0.16 intMono L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 6.32e-01 -0.0629 0.131 0.16 intMono L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 1.95e-01 -0.121 0.093 0.17 ncMono L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 5.98e-01 0.047 0.0889 0.17 ncMono L2
ENSG00000146376 ARHGAP18 171 sc-eQTL 1.28e-01 -0.191 0.125 0.169 pDC L2
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 4.02e-01 0.106 0.126 0.169 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 171 sc-eQTL 4.75e-01 -0.0803 0.112 0.162 B_Memory LOneK1K
ENSG00000164483 SAMD3 -655077 sc-eQTL 5.68e-02 0.21 0.11 0.162 B_Memory LOneK1K
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 8.07e-01 0.029 0.118 0.162 B_Memory LOneK1K
ENSG00000146376 ARHGAP18 171 sc-eQTL 8.33e-01 0.0259 0.122 0.162 B_Naive LOneK1K
ENSG00000164483 SAMD3 -655077 sc-eQTL 6.75e-01 -0.0461 0.11 0.162 B_Naive LOneK1K
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 5.68e-01 -0.0669 0.117 0.162 B_Naive LOneK1K
ENSG00000146376 ARHGAP18 171 sc-eQTL 1.29e-01 -0.124 0.0813 0.162 CD14_Mono LOneK1K
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 9.89e-01 -0.00169 0.119 0.162 CD14_Mono LOneK1K
ENSG00000146376 ARHGAP18 171 sc-eQTL 9.67e-01 -0.00336 0.0815 0.162 CD16_Mono LOneK1K
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 4.43e-01 0.0662 0.0861 0.162 CD16_Mono LOneK1K
ENSG00000146376 ARHGAP18 171 sc-eQTL 3.14e-01 0.101 0.0998 0.162 NK_CD56dim LOneK1K
ENSG00000164483 SAMD3 -655077 sc-eQTL 3.14e-01 0.0548 0.0543 0.162 NK_CD56dim LOneK1K
ENSG00000198945 L3MBTL3 -303351 sc-eQTL 4.07e-01 0.0843 0.101 0.162 NK_CD56dim LOneK1K
ENSG00000227678 AL355581.1 -435831 sc-eQTL 5.33e-01 0.0732 0.117 0.162 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000146376 ARHGAP18 171 eQTL 0.00603 -0.0489 0.0178 0.00179 0.00114 0.197
ENSG00000196569 LAMA2 827207 eQTL 0.0265 0.0725 0.0326 0.00157 0.0 0.197

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000196569 LAMA2 827207 2.56e-07 1.16e-07 3.49e-08 1.67e-07 1.03e-07 8.95e-08 1.31e-07 5.29e-08 1.33e-07 3.99e-08 1.55e-07 7.4e-08 1.19e-07 6.1e-08 4.48e-08 7.4e-08 5.2e-08 1.02e-07 4.91e-08 2.93e-08 1.04e-07 1.31e-07 1.31e-07 5.23e-08 1.32e-07 1.03e-07 1.12e-07 8.27e-08 1.04e-07 1.08e-07 9.43e-08 3.29e-08 2.6e-08 8.21e-08 1.06e-07 4.32e-08 3.84e-08 8e-08 8.39e-08 3.96e-08 2.71e-08 1.43e-07 4.51e-08 0.0 1.15e-07 1.86e-08 1.47e-07 4.96e-09 4.72e-08