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Genes within 1Mb (chr6:129691228:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 1.71e-01 -0.156 0.114 0.09 B L1
ENSG00000164483 SAMD3 -674197 sc-eQTL 3.42e-01 0.116 0.121 0.09 B L1
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 4.22e-01 -0.0959 0.119 0.09 B L1
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 9.10e-01 -0.012 0.105 0.09 CD4T L1
ENSG00000164483 SAMD3 -674197 sc-eQTL 2.17e-01 -0.13 0.105 0.09 CD4T L1
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 5.68e-01 -0.0557 0.0972 0.09 CD4T L1
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 7.22e-02 -0.163 0.0902 0.09 CD8T L1
ENSG00000164483 SAMD3 -674197 sc-eQTL 8.00e-02 -0.102 0.0581 0.09 CD8T L1
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 5.11e-01 -0.0874 0.133 0.09 CD8T L1
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 2.51e-01 -0.172 0.149 0.092 DC L1
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 6.02e-01 -0.0795 0.152 0.092 DC L1
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 5.51e-01 -0.0534 0.0893 0.09 Mono L1
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 4.51e-01 -0.0989 0.131 0.09 Mono L1
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 4.49e-01 -0.0919 0.121 0.09 NK L1
ENSG00000164483 SAMD3 -674197 sc-eQTL 5.01e-01 -0.0472 0.07 0.09 NK L1
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 3.77e-01 0.109 0.124 0.09 NK L1
ENSG00000227678 AL355581.1 -454951 sc-eQTL 1.02e-01 -0.233 0.142 0.09 NK L1
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 6.22e-01 -0.0681 0.138 0.09 Other_T L1
ENSG00000164483 SAMD3 -674197 sc-eQTL 6.22e-01 -0.0338 0.0683 0.09 Other_T L1
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 2.83e-01 -0.16 0.149 0.09 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 1.40e-01 -0.23 0.155 0.102 B_Activated L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 8.06e-01 -0.0257 0.105 0.102 B_Activated L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 9.21e-01 0.0164 0.165 0.102 B_Activated L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 4.07e-02 -0.303 0.147 0.09 B_Intermediate L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 6.58e-01 -0.0545 0.123 0.09 B_Intermediate L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 5.58e-01 -0.0915 0.156 0.09 B_Intermediate L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 2.01e-01 -0.189 0.147 0.091 B_Memory L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 5.51e-01 0.0817 0.137 0.091 B_Memory L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 8.00e-01 0.037 0.146 0.091 B_Memory L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 3.15e-01 -0.152 0.151 0.09 B_Naive1 L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 3.79e-01 0.109 0.124 0.09 B_Naive1 L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 3.85e-01 -0.126 0.145 0.09 B_Naive1 L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 1.75e-01 -0.215 0.158 0.09 B_Naive2 L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 5.80e-01 -0.0575 0.104 0.09 B_Naive2 L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 5.03e-01 -0.102 0.151 0.09 B_Naive2 L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 9.51e-01 -0.00941 0.154 0.089 CD4_CTL L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 9.73e-01 -0.00353 0.103 0.089 CD4_CTL L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 5.08e-01 0.103 0.155 0.089 CD4_CTL L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 1.20e-01 -0.201 0.128 0.09 CD4_Naive L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 2.43e-01 -0.148 0.126 0.09 CD4_Naive L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 2.13e-01 -0.135 0.108 0.09 CD4_Naive L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 9.64e-01 -0.00646 0.142 0.09 CD4_TCM L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 5.27e-01 -0.0765 0.121 0.09 CD4_TCM L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 8.11e-01 -0.0266 0.111 0.09 CD4_TCM L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 2.57e-01 0.17 0.149 0.09 CD4_TEM L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 5.64e-01 -0.0579 0.1 0.09 CD4_TEM L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 8.16e-01 -0.0314 0.135 0.09 CD4_TEM L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 1.81e-01 -0.199 0.149 0.09 CD8_CTL L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 5.59e-01 -0.0566 0.0969 0.09 CD8_CTL L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 5.54e-01 0.0894 0.151 0.09 CD8_CTL L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 8.09e-01 0.0342 0.141 0.09 CD8_Naive L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 3.11e-02 -0.272 0.125 0.09 CD8_Naive L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 3.30e-01 -0.119 0.122 0.09 CD8_Naive L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 4.87e-01 0.106 0.153 0.093 CD8_TCM L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 9.75e-01 0.00438 0.142 0.093 CD8_TCM L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 3.94e-01 -0.142 0.166 0.093 CD8_TCM L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 9.92e-01 0.00159 0.15 0.089 CD8_TEM L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 8.63e-01 0.02 0.116 0.089 CD8_TEM L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 2.63e-02 -0.357 0.159 0.089 CD8_TEM L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 5.65e-01 -0.0841 0.146 0.091 MAIT L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 4.07e-01 -0.0754 0.0907 0.091 MAIT L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 7.29e-02 -0.258 0.143 0.091 MAIT L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 1.23e-01 -0.222 0.143 0.089 NK_CD56bright L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 3.70e-01 0.111 0.124 0.089 NK_CD56bright L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 2.64e-01 0.168 0.15 0.089 NK_CD56bright L2
ENSG00000227678 AL355581.1 -454951 sc-eQTL 9.13e-01 -0.0157 0.144 0.089 NK_CD56bright L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 7.49e-01 -0.0433 0.135 0.091 NK_CD56dim L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 5.87e-01 -0.04 0.0735 0.091 NK_CD56dim L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 9.00e-01 -0.0173 0.138 0.091 NK_CD56dim L2
ENSG00000227678 AL355581.1 -454951 sc-eQTL 1.57e-01 -0.21 0.148 0.091 NK_CD56dim L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 9.96e-01 -0.000703 0.15 0.087 NK_HLA L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 8.06e-01 -0.0324 0.132 0.087 NK_HLA L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 2.46e-01 -0.179 0.154 0.087 NK_HLA L2
ENSG00000227678 AL355581.1 -454951 sc-eQTL 6.99e-01 -0.0565 0.146 0.087 NK_HLA L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 4.67e-01 -0.0962 0.132 0.091 NK_cytokine L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 9.20e-01 -0.00883 0.0879 0.091 NK_cytokine L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 3.91e-01 0.123 0.143 0.091 NK_cytokine L2
ENSG00000227678 AL355581.1 -454951 sc-eQTL 4.83e-02 -0.299 0.15 0.091 NK_cytokine L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 7.08e-01 0.0738 0.197 0.085 PB L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 9.38e-01 0.0139 0.179 0.085 PB L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 9.14e-01 -0.0187 0.173 0.085 PB L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 8.77e-01 -0.0244 0.157 0.089 Pro_T L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 2.39e-01 0.107 0.0904 0.089 Pro_T L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 2.74e-01 0.162 0.148 0.089 Pro_T L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 6.72e-01 0.0612 0.144 0.09 Treg L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 3.27e-01 0.124 0.127 0.09 Treg L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 3.43e-01 0.142 0.149 0.09 Treg L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 7.98e-01 0.0418 0.163 0.095 cDC L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 6.28e-01 0.0768 0.158 0.095 cDC L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 7.75e-01 0.031 0.108 0.09 cMono_IL1B L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 6.95e-01 -0.0582 0.148 0.09 cMono_IL1B L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 4.42e-02 -0.239 0.118 0.09 cMono_S100A L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 5.26e-01 -0.0963 0.152 0.09 cMono_S100A L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 5.20e-01 -0.108 0.167 0.1 gdT L2
ENSG00000164483 SAMD3 -674197 sc-eQTL 4.20e-02 -0.285 0.139 0.1 gdT L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 7.24e-02 -0.319 0.176 0.1 gdT L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 5.59e-01 -0.079 0.135 0.091 intMono L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 5.24e-01 0.104 0.163 0.091 intMono L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 3.17e-01 -0.118 0.118 0.088 ncMono L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 6.40e-01 0.0527 0.113 0.088 ncMono L2
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 8.80e-01 -0.0226 0.149 0.099 pDC L2
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 8.49e-01 0.0287 0.15 0.099 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 5.50e-03 -0.377 0.134 0.09 B_Memory LOneK1K
ENSG00000164483 SAMD3 -674197 sc-eQTL 5.71e-01 0.0764 0.135 0.09 B_Memory LOneK1K
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 8.38e-01 -0.0295 0.144 0.09 B_Memory LOneK1K
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 2.04e-01 -0.192 0.15 0.09 B_Naive LOneK1K
ENSG00000164483 SAMD3 -674197 sc-eQTL 7.30e-01 0.0467 0.135 0.09 B_Naive LOneK1K
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 3.44e-01 -0.136 0.144 0.09 B_Naive LOneK1K
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 9.70e-01 0.00383 0.1 0.09 CD14_Mono LOneK1K
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 3.90e-01 -0.126 0.146 0.09 CD14_Mono LOneK1K
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 2.46e-01 -0.118 0.101 0.091 CD16_Mono LOneK1K
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 3.16e-01 0.108 0.107 0.091 CD16_Mono LOneK1K
ENSG00000146376 ARHGAP18 -18949 sc-eQTL 4.73e-01 -0.0895 0.125 0.091 NK_CD56dim LOneK1K
ENSG00000164483 SAMD3 -674197 sc-eQTL 7.26e-01 -0.0239 0.0679 0.091 NK_CD56dim LOneK1K
ENSG00000198945 L3MBTL3 -322471 sc-eQTL 6.61e-01 0.0557 0.127 0.091 NK_CD56dim LOneK1K
ENSG00000227678 AL355581.1 -454951 sc-eQTL 4.91e-02 -0.287 0.145 0.091 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000196569 LAMA2 808087 eQTL 0.0356 -0.097 0.0461 0.00119 0.0 0.0947

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina