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Genes within 1Mb (chr6:129685725:T:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 6.76e-02 -0.137 0.0747 0.654 B L1
ENSG00000164483 SAMD3 -679700 sc-eQTL 7.69e-01 -0.0236 0.0802 0.654 B L1
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 9.95e-01 -0.000525 0.0788 0.654 B L1
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 7.78e-02 -0.122 0.0687 0.654 CD4T L1
ENSG00000164483 SAMD3 -679700 sc-eQTL 9.52e-01 -0.00418 0.0693 0.654 CD4T L1
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 5.38e-01 -0.0394 0.0638 0.654 CD4T L1
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 9.84e-01 -0.0012 0.059 0.654 CD8T L1
ENSG00000164483 SAMD3 -679700 sc-eQTL 1.62e-01 0.053 0.0378 0.654 CD8T L1
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 9.03e-02 0.146 0.0858 0.654 CD8T L1
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 4.85e-01 0.0671 0.0958 0.651 DC L1
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 1.37e-01 -0.145 0.0971 0.651 DC L1
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 1.04e-01 -0.0943 0.0578 0.654 Mono L1
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 4.19e-01 0.069 0.0852 0.654 Mono L1
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 4.06e-02 -0.164 0.0796 0.652 NK L1
ENSG00000164483 SAMD3 -679700 sc-eQTL 6.13e-01 0.0235 0.0464 0.652 NK L1
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 1.51e-01 0.118 0.0817 0.652 NK L1
ENSG00000227678 AL355581.1 -460454 sc-eQTL 8.62e-01 -0.0164 0.0947 0.652 NK L1
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 8.46e-01 -0.0174 0.0896 0.654 Other_T L1
ENSG00000164483 SAMD3 -679700 sc-eQTL 5.82e-01 0.0245 0.0443 0.654 Other_T L1
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 4.74e-01 0.0693 0.0966 0.654 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 6.30e-02 -0.197 0.105 0.663 B_Activated L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 6.51e-02 -0.131 0.0706 0.663 B_Activated L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 6.46e-01 -0.0516 0.112 0.663 B_Activated L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 6.11e-01 -0.0501 0.0983 0.655 B_Intermediate L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 6.99e-01 0.0315 0.0814 0.655 B_Intermediate L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 7.55e-01 0.0322 0.103 0.655 B_Intermediate L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 6.50e-01 -0.0449 0.0988 0.659 B_Memory L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 3.11e-01 -0.093 0.0915 0.659 B_Memory L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 4.03e-01 0.0819 0.0977 0.659 B_Memory L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 4.62e-02 -0.2 0.1 0.654 B_Naive1 L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 4.60e-01 -0.0611 0.0825 0.654 B_Naive1 L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 8.29e-01 -0.0209 0.0971 0.654 B_Naive1 L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 2.11e-01 -0.133 0.106 0.657 B_Naive2 L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 1.47e-01 -0.101 0.0694 0.657 B_Naive2 L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 5.70e-01 -0.058 0.102 0.657 B_Naive2 L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 2.35e-01 -0.117 0.0984 0.657 CD4_CTL L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 6.03e-01 0.0343 0.0658 0.657 CD4_CTL L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 9.18e-01 -0.0103 0.0998 0.657 CD4_CTL L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 6.44e-01 -0.0388 0.0837 0.654 CD4_Naive L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 9.27e-01 0.00754 0.0822 0.654 CD4_Naive L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 4.28e-01 -0.0559 0.0703 0.654 CD4_Naive L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 2.69e-01 -0.102 0.0923 0.654 CD4_TCM L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 5.95e-01 -0.0418 0.0786 0.654 CD4_TCM L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 8.39e-01 -0.0147 0.0723 0.654 CD4_TCM L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 5.53e-01 -0.059 0.0992 0.654 CD4_TEM L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 7.08e-01 0.0249 0.0664 0.654 CD4_TEM L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 7.86e-01 -0.0243 0.0896 0.654 CD4_TEM L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 8.79e-01 -0.0146 0.0959 0.654 CD8_CTL L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 5.58e-01 0.0366 0.0622 0.654 CD8_CTL L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 3.65e-01 0.0879 0.0969 0.654 CD8_CTL L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 7.75e-01 -0.0266 0.0929 0.654 CD8_Naive L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 7.53e-01 -0.0262 0.0832 0.654 CD8_Naive L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 6.67e-02 0.147 0.0798 0.654 CD8_Naive L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 9.43e-01 -0.00739 0.102 0.655 CD8_TCM L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 9.49e-01 0.00608 0.0951 0.655 CD8_TCM L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 5.16e-01 0.0723 0.111 0.655 CD8_TCM L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 3.34e-02 0.205 0.0957 0.648 CD8_TEM L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 4.53e-01 0.0565 0.075 0.648 CD8_TEM L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 3.27e-01 0.102 0.104 0.648 CD8_TEM L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 4.80e-01 -0.0675 0.0954 0.656 MAIT L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 8.82e-02 0.101 0.059 0.656 MAIT L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 4.71e-02 0.186 0.0934 0.656 MAIT L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 9.05e-01 0.0118 0.0986 0.651 NK_CD56bright L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 8.80e-01 -0.0129 0.0851 0.651 NK_CD56bright L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 3.02e-01 0.106 0.103 0.651 NK_CD56bright L2
ENSG00000227678 AL355581.1 -460454 sc-eQTL 8.56e-02 0.169 0.098 0.651 NK_CD56bright L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 1.17e-02 -0.224 0.088 0.655 NK_CD56dim L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 4.42e-01 0.0374 0.0485 0.655 NK_CD56dim L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 1.28e-01 0.139 0.0907 0.655 NK_CD56dim L2
ENSG00000227678 AL355581.1 -460454 sc-eQTL 5.43e-01 -0.0597 0.098 0.655 NK_CD56dim L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 3.26e-01 -0.0989 0.1 0.655 NK_HLA L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 6.58e-01 0.0391 0.0884 0.655 NK_HLA L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 8.35e-01 0.0217 0.104 0.655 NK_HLA L2
ENSG00000227678 AL355581.1 -460454 sc-eQTL 9.99e-01 -6.34e-05 0.0979 0.655 NK_HLA L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 9.46e-02 -0.146 0.0872 0.655 NK_cytokine L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 7.62e-01 -0.0177 0.0583 0.655 NK_cytokine L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 7.77e-01 -0.027 0.0951 0.655 NK_cytokine L2
ENSG00000227678 AL355581.1 -460454 sc-eQTL 5.02e-01 -0.0678 0.101 0.655 NK_cytokine L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 1.72e-01 0.182 0.132 0.674 PB L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 4.16e-01 -0.0991 0.121 0.674 PB L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 3.64e-01 0.107 0.117 0.674 PB L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 7.45e-01 0.0329 0.101 0.659 Pro_T L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 4.97e-01 0.0396 0.0582 0.659 Pro_T L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 3.89e-01 0.082 0.095 0.659 Pro_T L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 5.56e-01 -0.0566 0.096 0.654 Treg L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 3.50e-01 0.079 0.0844 0.654 Treg L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 6.65e-01 -0.0432 0.0995 0.654 Treg L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 6.04e-01 0.055 0.106 0.651 cDC L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 9.83e-01 -0.00226 0.103 0.651 cDC L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 2.88e-01 -0.0755 0.0708 0.654 cMono_IL1B L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 8.14e-01 0.0229 0.0974 0.654 cMono_IL1B L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 2.62e-01 -0.0888 0.079 0.654 cMono_S100A L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 8.52e-01 0.0189 0.101 0.654 cMono_S100A L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 9.67e-02 -0.191 0.114 0.648 gdT L2
ENSG00000164483 SAMD3 -679700 sc-eQTL 9.06e-01 -0.0115 0.0972 0.648 gdT L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 6.24e-01 -0.0604 0.123 0.648 gdT L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 3.70e-01 -0.0777 0.0864 0.656 intMono L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 8.36e-02 0.181 0.104 0.656 intMono L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 3.95e-02 -0.163 0.0785 0.652 ncMono L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 9.13e-01 -0.0083 0.0757 0.652 ncMono L2
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 1.29e-01 0.163 0.107 0.647 pDC L2
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 1.56e-02 -0.26 0.106 0.647 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 2.67e-01 -0.0999 0.0897 0.654 B_Memory LOneK1K
ENSG00000164483 SAMD3 -679700 sc-eQTL 8.64e-01 -0.0152 0.0886 0.654 B_Memory LOneK1K
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 7.39e-01 0.0316 0.0947 0.654 B_Memory LOneK1K
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 2.37e-02 -0.224 0.0985 0.654 B_Naive LOneK1K
ENSG00000164483 SAMD3 -679700 sc-eQTL 2.79e-01 -0.0969 0.0893 0.654 B_Naive LOneK1K
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 7.02e-01 -0.0364 0.0952 0.654 B_Naive LOneK1K
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 2.12e-01 -0.0821 0.0656 0.654 CD14_Mono LOneK1K
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 7.33e-01 0.0329 0.0961 0.654 CD14_Mono LOneK1K
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 1.34e-01 -0.0989 0.0657 0.653 CD16_Mono LOneK1K
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 4.07e-01 0.058 0.0698 0.653 CD16_Mono LOneK1K
ENSG00000146376 ARHGAP18 -24452 sc-eQTL 1.13e-02 -0.207 0.0808 0.655 NK_CD56dim LOneK1K
ENSG00000164483 SAMD3 -679700 sc-eQTL 5.13e-01 0.0293 0.0446 0.655 NK_CD56dim LOneK1K
ENSG00000198945 L3MBTL3 -327974 sc-eQTL 2.46e-01 0.0967 0.0832 0.655 NK_CD56dim LOneK1K
ENSG00000227678 AL355581.1 -460454 sc-eQTL 4.74e-01 -0.0691 0.0964 0.655 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000146376 ARHGAP18 -24452 eQTL 0.00359 -0.044 0.0151 0.0023 0.00169 0.337

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina