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Genes within 1Mb (chr6:129683839:G:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 9.30e-02 -0.153 0.0905 0.167 B L1
ENSG00000164483 SAMD3 -681586 sc-eQTL 5.81e-01 0.0536 0.0971 0.167 B L1
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 4.38e-01 -0.074 0.0952 0.167 B L1
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 7.18e-01 -0.0305 0.0843 0.167 CD4T L1
ENSG00000164483 SAMD3 -681586 sc-eQTL 2.93e-01 -0.0888 0.0842 0.167 CD4T L1
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 6.37e-01 0.0368 0.0778 0.167 CD4T L1
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 4.15e-01 -0.0588 0.0719 0.167 CD8T L1
ENSG00000164483 SAMD3 -681586 sc-eQTL 5.22e-01 -0.0297 0.0463 0.167 CD8T L1
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 9.01e-01 0.0132 0.105 0.167 CD8T L1
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 7.85e-01 -0.0324 0.119 0.171 DC L1
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 2.75e-02 -0.265 0.119 0.171 DC L1
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 2.67e-01 -0.0798 0.0717 0.167 Mono L1
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 5.49e-01 0.0632 0.105 0.167 Mono L1
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 1.33e-01 -0.145 0.0961 0.167 NK L1
ENSG00000164483 SAMD3 -681586 sc-eQTL 4.89e-01 -0.0387 0.0558 0.167 NK L1
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 2.66e-01 0.11 0.0983 0.167 NK L1
ENSG00000227678 AL355581.1 -462340 sc-eQTL 2.92e-02 -0.247 0.113 0.167 NK L1
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 5.52e-01 0.0659 0.111 0.167 Other_T L1
ENSG00000164483 SAMD3 -681586 sc-eQTL 9.90e-01 -0.000719 0.0548 0.167 Other_T L1
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 2.48e-01 -0.138 0.119 0.167 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 3.07e-02 -0.279 0.128 0.181 B_Activated L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 9.45e-01 0.00597 0.0871 0.181 B_Activated L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 8.84e-01 -0.02 0.137 0.181 B_Activated L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 3.89e-01 -0.102 0.118 0.167 B_Intermediate L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 8.20e-01 -0.0222 0.0975 0.167 B_Intermediate L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 9.50e-01 -0.00769 0.124 0.167 B_Intermediate L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 9.66e-01 -0.005 0.118 0.168 B_Memory L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 9.14e-01 -0.0118 0.109 0.168 B_Memory L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 6.49e-01 0.0532 0.117 0.168 B_Memory L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 6.39e-02 -0.223 0.12 0.167 B_Naive1 L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 6.70e-01 0.0422 0.0989 0.167 B_Naive1 L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 6.81e-01 -0.0479 0.116 0.167 B_Naive1 L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 9.75e-01 0.00398 0.128 0.167 B_Naive2 L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 4.72e-01 -0.0603 0.0837 0.167 B_Naive2 L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 2.40e-01 -0.144 0.122 0.167 B_Naive2 L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 6.03e-01 0.0637 0.122 0.168 CD4_CTL L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 1.90e-01 0.107 0.0813 0.168 CD4_CTL L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 2.09e-01 0.155 0.123 0.168 CD4_CTL L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 6.22e-02 -0.19 0.102 0.167 CD4_Naive L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 3.77e-01 -0.0888 0.1 0.167 CD4_Naive L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 8.96e-01 -0.0113 0.0862 0.167 CD4_Naive L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 5.54e-01 -0.0669 0.113 0.167 CD4_TCM L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 3.92e-01 -0.082 0.0956 0.167 CD4_TCM L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 9.15e-01 0.0094 0.0882 0.167 CD4_TCM L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 2.47e-01 0.137 0.118 0.167 CD4_TEM L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 6.22e-01 -0.0392 0.0792 0.167 CD4_TEM L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 9.26e-01 -0.00998 0.107 0.167 CD4_TEM L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 3.73e-01 -0.104 0.116 0.167 CD8_CTL L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 8.76e-01 -0.0118 0.0756 0.167 CD8_CTL L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 1.06e-01 0.19 0.117 0.167 CD8_CTL L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 8.64e-01 0.0193 0.112 0.167 CD8_Naive L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 2.76e-01 -0.11 0.1 0.167 CD8_Naive L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 5.82e-01 -0.0536 0.0972 0.167 CD8_Naive L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 5.32e-01 0.077 0.123 0.171 CD8_TCM L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 2.79e-01 0.124 0.114 0.171 CD8_TCM L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 7.17e-01 -0.0486 0.134 0.171 CD8_TCM L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 5.08e-01 0.0772 0.116 0.167 CD8_TEM L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 3.49e-02 0.19 0.0895 0.167 CD8_TEM L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 3.75e-01 -0.111 0.125 0.167 CD8_TEM L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 3.73e-01 -0.104 0.117 0.169 MAIT L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 9.73e-01 0.00242 0.0726 0.169 MAIT L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 4.76e-01 -0.0822 0.115 0.169 MAIT L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 3.93e-01 -0.0984 0.115 0.164 NK_CD56bright L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 4.48e-01 -0.0754 0.0993 0.164 NK_CD56bright L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 1.27e-01 0.183 0.119 0.164 NK_CD56bright L2
ENSG00000227678 AL355581.1 -462340 sc-eQTL 9.33e-01 -0.0097 0.115 0.164 NK_CD56bright L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 3.98e-01 -0.091 0.108 0.168 NK_CD56dim L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 9.52e-01 0.00355 0.0585 0.168 NK_CD56dim L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 6.32e-01 -0.0527 0.11 0.168 NK_CD56dim L2
ENSG00000227678 AL355581.1 -462340 sc-eQTL 1.25e-01 -0.181 0.118 0.168 NK_CD56dim L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 6.43e-01 -0.0552 0.119 0.167 NK_HLA L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 6.71e-01 0.0444 0.104 0.167 NK_HLA L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 1.55e-01 -0.174 0.122 0.167 NK_HLA L2
ENSG00000227678 AL355581.1 -462340 sc-eQTL 5.38e-01 -0.0712 0.115 0.167 NK_HLA L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 3.18e-01 -0.106 0.105 0.168 NK_cytokine L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 5.56e-01 -0.0413 0.0702 0.168 NK_cytokine L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 5.49e-01 0.0687 0.114 0.168 NK_cytokine L2
ENSG00000227678 AL355581.1 -462340 sc-eQTL 2.77e-02 -0.266 0.12 0.168 NK_cytokine L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 6.33e-01 0.0768 0.16 0.174 PB L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 5.50e-01 -0.0874 0.146 0.174 PB L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 4.35e-01 0.11 0.141 0.174 PB L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 7.36e-01 0.0427 0.126 0.165 Pro_T L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 3.45e-01 0.0688 0.0727 0.165 Pro_T L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 7.40e-01 0.0396 0.119 0.165 Pro_T L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 2.14e-01 0.145 0.117 0.167 Treg L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 4.46e-01 -0.0786 0.103 0.167 Treg L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 1.67e-01 0.168 0.121 0.167 Treg L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 6.16e-01 0.0651 0.13 0.178 cDC L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 9.39e-01 -0.00963 0.126 0.178 cDC L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 5.00e-01 -0.0597 0.0882 0.167 cMono_IL1B L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 5.50e-01 0.0725 0.121 0.167 cMono_IL1B L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 8.28e-02 -0.17 0.0973 0.167 cMono_S100A L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 8.88e-01 0.0177 0.125 0.167 cMono_S100A L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 7.64e-01 -0.0419 0.139 0.185 gdT L2
ENSG00000164483 SAMD3 -681586 sc-eQTL 3.11e-01 -0.119 0.117 0.185 gdT L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 2.91e-02 -0.321 0.146 0.185 gdT L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 8.99e-01 -0.0141 0.111 0.164 intMono L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 8.41e-01 0.0269 0.134 0.164 intMono L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 2.00e-01 -0.124 0.0968 0.163 ncMono L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 5.25e-01 0.0589 0.0926 0.163 ncMono L2
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 9.51e-01 -0.00748 0.122 0.175 pDC L2
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 6.18e-01 -0.0613 0.123 0.175 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 1.06e-01 -0.175 0.108 0.167 B_Memory LOneK1K
ENSG00000164483 SAMD3 -681586 sc-eQTL 9.04e-01 -0.0129 0.107 0.167 B_Memory LOneK1K
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 9.47e-01 0.0076 0.114 0.167 B_Memory LOneK1K
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 1.68e-01 -0.165 0.119 0.167 B_Naive LOneK1K
ENSG00000164483 SAMD3 -681586 sc-eQTL 9.80e-01 -0.00265 0.108 0.167 B_Naive LOneK1K
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 3.99e-01 -0.0967 0.114 0.167 B_Naive LOneK1K
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 5.10e-01 -0.0537 0.0812 0.167 CD14_Mono LOneK1K
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 6.67e-01 0.051 0.119 0.167 CD14_Mono LOneK1K
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 3.42e-01 -0.0797 0.0837 0.168 CD16_Mono LOneK1K
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 4.19e-01 0.0718 0.0886 0.168 CD16_Mono LOneK1K
ENSG00000146376 ARHGAP18 -26338 sc-eQTL 1.35e-01 -0.148 0.0986 0.168 NK_CD56dim LOneK1K
ENSG00000164483 SAMD3 -681586 sc-eQTL 8.42e-01 0.0108 0.054 0.168 NK_CD56dim LOneK1K
ENSG00000198945 L3MBTL3 -329860 sc-eQTL 7.58e-01 0.0311 0.101 0.168 NK_CD56dim LOneK1K
ENSG00000227678 AL355581.1 -462340 sc-eQTL 9.94e-03 -0.298 0.115 0.168 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000146376 ARHGAP18 -26338 eQTL 0.0435 0.0383 0.0189 0.0 0.0 0.187
ENSG00000196569 LAMA2 800698 eQTL 0.014 -0.0853 0.0346 0.00189 0.0 0.187

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000146376 ARHGAP18 -26338 2.02e-05 2.67e-05 4.29e-06 1.32e-05 3.2e-06 9.14e-06 2.67e-05 3.4e-06 2.17e-05 9.83e-06 2.86e-05 1.23e-05 3.65e-05 1.08e-05 5.23e-06 1.15e-05 1.27e-05 1.84e-05 5.87e-06 4.81e-06 9.45e-06 2.11e-05 2.24e-05 5.66e-06 3.79e-05 5.78e-06 8.97e-06 7.77e-06 2.03e-05 1.93e-05 1.39e-05 1.4e-06 1.49e-06 4.75e-06 1.01e-05 3.83e-06 2.05e-06 2.68e-06 3.61e-06 2.07e-06 1.44e-06 3.15e-05 2.65e-06 3.62e-07 1.76e-06 2.61e-06 3.37e-06 1.17e-06 1.02e-06