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Genes within 1Mb (chr6:129628560:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 4.06e-01 -0.0687 0.0825 0.209 B L1
ENSG00000164483 SAMD3 -736865 sc-eQTL 7.11e-01 0.0327 0.0881 0.209 B L1
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 4.14e-01 -0.0706 0.0863 0.209 B L1
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 5.53e-01 -0.0456 0.0767 0.209 CD4T L1
ENSG00000164483 SAMD3 -736865 sc-eQTL 9.32e-01 -0.00654 0.0768 0.209 CD4T L1
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 1.60e-03 -0.221 0.0691 0.209 CD4T L1
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 9.48e-02 -0.108 0.0646 0.209 CD8T L1
ENSG00000164483 SAMD3 -736865 sc-eQTL 3.91e-01 -0.0359 0.0418 0.209 CD8T L1
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 1.12e-01 -0.151 0.0946 0.209 CD8T L1
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 9.42e-01 -0.00799 0.11 0.212 DC L1
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 5.71e-01 -0.0638 0.112 0.212 DC L1
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 9.65e-01 -0.00279 0.0643 0.209 Mono L1
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 5.84e-01 0.0517 0.0943 0.209 Mono L1
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 3.92e-01 -0.0774 0.0903 0.21 NK L1
ENSG00000164483 SAMD3 -736865 sc-eQTL 1.48e-01 -0.0754 0.052 0.21 NK L1
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 9.15e-01 -0.00983 0.0923 0.21 NK L1
ENSG00000227678 AL355581.1 -517619 sc-eQTL 8.03e-01 -0.0266 0.107 0.21 NK L1
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 2.76e-02 -0.221 0.0994 0.209 Other_T L1
ENSG00000164483 SAMD3 -736865 sc-eQTL 2.50e-01 -0.0572 0.0496 0.209 Other_T L1
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 1.39e-01 -0.16 0.108 0.209 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 9.46e-01 0.00807 0.119 0.217 B_Activated L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 1.94e-01 -0.104 0.0795 0.217 B_Activated L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 3.78e-01 -0.111 0.125 0.217 B_Activated L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 4.62e-01 -0.0795 0.108 0.208 B_Intermediate L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 8.09e-01 -0.0216 0.0894 0.208 B_Intermediate L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 2.86e-01 -0.121 0.113 0.208 B_Intermediate L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 8.31e-01 -0.0233 0.109 0.211 B_Memory L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 3.57e-01 0.0931 0.101 0.211 B_Memory L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 9.89e-01 0.00148 0.108 0.211 B_Memory L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 5.74e-01 -0.0617 0.11 0.209 B_Naive1 L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 4.22e-01 -0.0721 0.0895 0.209 B_Naive1 L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 4.69e-01 -0.0763 0.105 0.209 B_Naive1 L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 1.53e-02 -0.286 0.117 0.21 B_Naive2 L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 9.59e-01 0.00402 0.0775 0.21 B_Naive2 L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 5.42e-01 -0.069 0.113 0.21 B_Naive2 L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 9.68e-01 0.00447 0.11 0.209 CD4_CTL L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 5.60e-01 -0.0428 0.0732 0.209 CD4_CTL L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 1.42e-01 -0.163 0.11 0.209 CD4_CTL L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 1.02e-01 -0.151 0.0922 0.209 CD4_Naive L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 9.41e-01 -0.00678 0.0912 0.209 CD4_Naive L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 1.90e-03 -0.24 0.0764 0.209 CD4_Naive L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 4.99e-01 0.0694 0.102 0.209 CD4_TCM L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 7.40e-01 0.0288 0.087 0.209 CD4_TCM L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 5.42e-02 -0.154 0.0793 0.209 CD4_TCM L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 5.99e-01 -0.0569 0.108 0.209 CD4_TEM L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 2.99e-01 -0.0753 0.0723 0.209 CD4_TEM L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 7.62e-01 -0.0296 0.0977 0.209 CD4_TEM L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 4.77e-01 -0.0744 0.104 0.209 CD8_CTL L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 6.89e-01 -0.0272 0.0679 0.209 CD8_CTL L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 9.96e-01 -0.000531 0.106 0.209 CD8_CTL L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 6.40e-01 0.0472 0.101 0.209 CD8_Naive L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 4.60e-01 -0.0668 0.0902 0.209 CD8_Naive L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 1.92e-01 -0.114 0.0869 0.209 CD8_Naive L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 2.75e-01 0.12 0.11 0.218 CD8_TCM L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 2.81e-01 0.111 0.102 0.218 CD8_TCM L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 6.55e-01 -0.0535 0.12 0.218 CD8_TCM L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 8.45e-01 0.0203 0.104 0.208 CD8_TEM L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 1.16e-01 -0.126 0.0801 0.208 CD8_TEM L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 4.38e-02 -0.225 0.111 0.208 CD8_TEM L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 4.10e-02 -0.216 0.105 0.21 MAIT L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 3.68e-01 -0.0594 0.0659 0.21 MAIT L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 7.13e-02 -0.188 0.104 0.21 MAIT L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 1.11e-01 -0.17 0.106 0.209 NK_CD56bright L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 6.83e-01 0.0377 0.0922 0.209 NK_CD56bright L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 4.89e-01 -0.0771 0.111 0.209 NK_CD56bright L2
ENSG00000227678 AL355581.1 -517619 sc-eQTL 1.33e-01 0.16 0.106 0.209 NK_CD56bright L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 6.11e-01 -0.0512 0.1 0.209 NK_CD56dim L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 4.61e-01 -0.0403 0.0546 0.209 NK_CD56dim L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 9.18e-01 -0.0106 0.103 0.209 NK_CD56dim L2
ENSG00000227678 AL355581.1 -517619 sc-eQTL 5.52e-01 -0.0657 0.11 0.209 NK_CD56dim L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 5.22e-01 -0.0709 0.111 0.205 NK_HLA L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 1.01e-01 -0.159 0.0966 0.205 NK_HLA L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 8.28e-01 -0.0248 0.114 0.205 NK_HLA L2
ENSG00000227678 AL355581.1 -517619 sc-eQTL 9.70e-01 -0.00402 0.108 0.205 NK_HLA L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 6.64e-01 0.0425 0.0976 0.209 NK_cytokine L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 1.11e-01 -0.103 0.0645 0.209 NK_cytokine L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 7.47e-01 0.0342 0.106 0.209 NK_cytokine L2
ENSG00000227678 AL355581.1 -517619 sc-eQTL 2.85e-01 -0.12 0.112 0.209 NK_cytokine L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 8.92e-01 0.0188 0.139 0.204 PB L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 9.37e-01 0.01 0.127 0.204 PB L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 9.98e-01 0.000231 0.122 0.204 PB L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 1.57e-01 -0.158 0.111 0.211 Pro_T L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 5.54e-01 -0.038 0.0641 0.211 Pro_T L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 4.55e-01 0.0785 0.105 0.211 Pro_T L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 9.50e-01 0.00652 0.104 0.209 Treg L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 3.45e-01 0.0864 0.0913 0.209 Treg L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 2.87e-01 -0.115 0.107 0.209 Treg L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 5.18e-01 0.0789 0.122 0.207 cDC L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 9.04e-01 -0.0144 0.119 0.207 cDC L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 8.59e-01 0.0139 0.078 0.209 cMono_IL1B L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 2.32e-01 0.128 0.107 0.209 cMono_IL1B L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 4.66e-01 -0.0631 0.0864 0.209 cMono_S100A L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 6.15e-01 -0.0556 0.11 0.209 cMono_S100A L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 5.74e-01 -0.0721 0.128 0.221 gdT L2
ENSG00000164483 SAMD3 -736865 sc-eQTL 3.37e-01 -0.104 0.108 0.221 gdT L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 4.24e-02 -0.275 0.134 0.221 gdT L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 4.06e-01 0.0817 0.0981 0.213 intMono L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 7.16e-01 -0.0433 0.119 0.213 intMono L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 2.13e-01 0.111 0.0887 0.208 ncMono L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 3.58e-01 -0.078 0.0847 0.208 ncMono L2
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 3.24e-01 0.114 0.116 0.206 pDC L2
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 4.86e-01 -0.0815 0.117 0.206 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 6.22e-01 -0.0487 0.0985 0.209 B_Memory LOneK1K
ENSG00000164483 SAMD3 -736865 sc-eQTL 3.29e-01 0.0948 0.0968 0.209 B_Memory LOneK1K
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 3.47e-01 -0.0976 0.104 0.209 B_Memory LOneK1K
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 1.98e-01 -0.14 0.109 0.209 B_Naive LOneK1K
ENSG00000164483 SAMD3 -736865 sc-eQTL 7.52e-01 -0.0309 0.0979 0.209 B_Naive LOneK1K
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 3.69e-01 -0.0935 0.104 0.209 B_Naive LOneK1K
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 9.19e-01 0.00742 0.073 0.209 CD14_Mono LOneK1K
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 5.57e-01 0.0625 0.106 0.209 CD14_Mono LOneK1K
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 1.49e-01 0.106 0.0731 0.211 CD16_Mono LOneK1K
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 4.92e-01 -0.0535 0.0777 0.211 CD16_Mono LOneK1K
ENSG00000146376 ARHGAP18 -81617 sc-eQTL 6.41e-01 -0.0431 0.0923 0.209 NK_CD56dim LOneK1K
ENSG00000164483 SAMD3 -736865 sc-eQTL 2.76e-01 -0.0548 0.0501 0.209 NK_CD56dim LOneK1K
ENSG00000198945 L3MBTL3 -385139 sc-eQTL 9.09e-01 0.0108 0.0939 0.209 NK_CD56dim LOneK1K
ENSG00000227678 AL355581.1 -517619 sc-eQTL 4.10e-01 -0.0895 0.108 0.209 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000164484 TMEM200A -737174 eQTL 0.0298 -0.0825 0.0379 0.0 0.0 0.232
ENSG00000196569 LAMA2 745419 eQTL 0.0204 -0.0745 0.0321 0.00161 0.0 0.232

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina