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Genes within 1Mb (chr6:129588409:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 4.73e-01 0.0728 0.101 0.12 B L1
ENSG00000164483 SAMD3 -777016 sc-eQTL 7.56e-01 0.0336 0.108 0.12 B L1
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 1.81e-01 0.142 0.106 0.12 B L1
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 3.70e-03 0.27 0.092 0.12 CD4T L1
ENSG00000164483 SAMD3 -777016 sc-eQTL 8.08e-01 0.0229 0.094 0.12 CD4T L1
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 9.07e-01 -0.0101 0.0866 0.12 CD4T L1
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 1.92e-02 0.187 0.0792 0.12 CD8T L1
ENSG00000164483 SAMD3 -777016 sc-eQTL 9.06e-01 -0.0061 0.0516 0.12 CD8T L1
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 4.40e-01 0.0907 0.117 0.12 CD8T L1
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 1.54e-01 0.194 0.135 0.115 DC L1
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 5.54e-01 0.082 0.138 0.115 DC L1
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 2.55e-01 0.0891 0.078 0.12 Mono L1
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 3.29e-03 0.335 0.113 0.12 Mono L1
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 3.62e-01 -0.0987 0.108 0.12 NK L1
ENSG00000164483 SAMD3 -777016 sc-eQTL 1.61e-01 -0.0877 0.0623 0.12 NK L1
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 3.68e-01 0.0995 0.11 0.12 NK L1
ENSG00000227678 AL355581.1 -557770 sc-eQTL 2.63e-02 0.282 0.126 0.12 NK L1
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 8.95e-01 -0.0161 0.122 0.12 Other_T L1
ENSG00000164483 SAMD3 -777016 sc-eQTL 7.65e-01 0.0181 0.0603 0.12 Other_T L1
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 5.84e-01 0.0721 0.132 0.12 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 3.32e-02 0.314 0.146 0.115 B_Activated L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 8.42e-01 -0.0198 0.0992 0.115 B_Activated L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 8.48e-01 -0.03 0.156 0.115 B_Activated L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 8.57e-01 0.0234 0.13 0.12 B_Intermediate L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 6.08e-01 0.0552 0.107 0.12 B_Intermediate L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 7.02e-01 0.0521 0.136 0.12 B_Intermediate L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 7.82e-01 0.0364 0.131 0.121 B_Memory L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 7.08e-01 -0.0457 0.122 0.121 B_Memory L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 1.48e-01 0.188 0.13 0.121 B_Memory L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 6.97e-01 0.0522 0.134 0.12 B_Naive1 L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 6.26e-01 -0.0535 0.11 0.12 B_Naive1 L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 2.49e-01 0.149 0.129 0.12 B_Naive1 L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 5.82e-01 -0.0791 0.143 0.12 B_Naive2 L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 1.06e-01 0.151 0.0934 0.12 B_Naive2 L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 9.44e-01 0.00959 0.137 0.12 B_Naive2 L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 6.82e-01 -0.0552 0.134 0.123 CD4_CTL L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 9.92e-01 -0.000908 0.0896 0.123 CD4_CTL L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 8.49e-01 -0.0259 0.136 0.123 CD4_CTL L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 1.06e-02 0.289 0.112 0.12 CD4_Naive L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 3.34e-01 0.108 0.111 0.12 CD4_Naive L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 8.21e-01 0.0217 0.0956 0.12 CD4_Naive L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 3.95e-02 0.258 0.124 0.12 CD4_TCM L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 5.25e-01 -0.0678 0.107 0.12 CD4_TCM L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 2.80e-01 -0.106 0.0979 0.12 CD4_TCM L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 5.44e-01 0.0804 0.132 0.12 CD4_TEM L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 8.49e-01 -0.0168 0.0886 0.12 CD4_TEM L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 8.72e-01 -0.0192 0.12 0.12 CD4_TEM L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 3.31e-01 0.126 0.13 0.12 CD8_CTL L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 5.88e-01 -0.0457 0.0843 0.12 CD8_CTL L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 3.25e-01 0.129 0.131 0.12 CD8_CTL L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 2.34e-01 0.149 0.125 0.12 CD8_Naive L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 3.54e-01 0.104 0.112 0.12 CD8_Naive L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 8.60e-01 0.0191 0.109 0.12 CD8_Naive L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 8.40e-01 -0.0277 0.137 0.118 CD8_TCM L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 8.95e-01 -0.0169 0.127 0.118 CD8_TCM L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 3.03e-01 0.153 0.148 0.118 CD8_TCM L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 5.20e-01 0.0828 0.129 0.126 CD8_TEM L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 8.29e-01 -0.0217 0.1 0.126 CD8_TEM L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 2.16e-01 0.172 0.138 0.126 CD8_TEM L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 4.14e-01 -0.107 0.13 0.121 MAIT L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 7.91e-01 -0.0215 0.081 0.121 MAIT L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 1.36e-01 0.192 0.128 0.121 MAIT L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 8.70e-01 0.0208 0.126 0.124 NK_CD56bright L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 7.11e-01 -0.0404 0.109 0.124 NK_CD56bright L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 5.06e-01 0.0876 0.131 0.124 NK_CD56bright L2
ENSG00000227678 AL355581.1 -557770 sc-eQTL 9.82e-02 0.208 0.125 0.124 NK_CD56bright L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 7.73e-01 -0.0346 0.12 0.121 NK_CD56dim L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 2.32e-01 -0.0778 0.0649 0.121 NK_CD56dim L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 1.34e-01 0.183 0.122 0.121 NK_CD56dim L2
ENSG00000227678 AL355581.1 -557770 sc-eQTL 5.53e-03 0.362 0.129 0.121 NK_CD56dim L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 5.08e-01 -0.0887 0.134 0.119 NK_HLA L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 7.93e-01 0.0309 0.118 0.119 NK_HLA L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 6.42e-01 0.0643 0.138 0.119 NK_HLA L2
ENSG00000227678 AL355581.1 -557770 sc-eQTL 7.35e-01 0.044 0.13 0.119 NK_HLA L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 1.24e-01 -0.178 0.116 0.121 NK_cytokine L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 3.31e-01 -0.0751 0.077 0.121 NK_cytokine L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 4.41e-01 -0.0971 0.126 0.121 NK_cytokine L2
ENSG00000227678 AL355581.1 -557770 sc-eQTL 8.23e-01 0.0298 0.133 0.121 NK_cytokine L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 7.45e-01 -0.0596 0.183 0.107 PB L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 9.01e-02 -0.281 0.164 0.107 PB L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 1.54e-01 0.228 0.159 0.107 PB L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 1.94e-01 -0.176 0.135 0.117 Pro_T L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 5.76e-01 -0.0436 0.0779 0.117 Pro_T L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 5.58e-01 0.0748 0.127 0.117 Pro_T L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 2.52e-01 0.147 0.128 0.12 Treg L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 4.28e-01 -0.0894 0.113 0.12 Treg L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 9.34e-01 -0.0111 0.133 0.12 Treg L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 5.42e-01 0.0902 0.148 0.115 cDC L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 7.02e-01 -0.0551 0.144 0.115 cDC L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 3.82e-02 0.198 0.095 0.12 cMono_IL1B L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 2.42e-03 0.396 0.129 0.12 cMono_IL1B L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 8.82e-01 -0.0159 0.107 0.12 cMono_S100A L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 1.35e-01 0.204 0.136 0.12 cMono_S100A L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 1.56e-01 0.219 0.154 0.127 gdT L2
ENSG00000164483 SAMD3 -777016 sc-eQTL 6.95e-01 -0.0511 0.13 0.127 gdT L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 4.38e-01 0.128 0.164 0.127 gdT L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 7.95e-02 0.212 0.12 0.116 intMono L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 4.65e-01 -0.107 0.146 0.116 intMono L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 7.83e-01 -0.0294 0.107 0.113 ncMono L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 2.41e-01 0.119 0.101 0.113 ncMono L2
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 4.39e-01 0.108 0.14 0.121 pDC L2
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 1.12e-01 0.224 0.14 0.121 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 2.04e-01 0.152 0.119 0.12 B_Memory LOneK1K
ENSG00000164483 SAMD3 -777016 sc-eQTL 9.51e-01 0.0073 0.118 0.12 B_Memory LOneK1K
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 2.27e-01 0.152 0.126 0.12 B_Memory LOneK1K
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 5.30e-01 0.0837 0.133 0.12 B_Naive LOneK1K
ENSG00000164483 SAMD3 -777016 sc-eQTL 5.69e-01 0.0683 0.12 0.12 B_Naive LOneK1K
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 2.94e-01 0.134 0.127 0.12 B_Naive LOneK1K
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 2.58e-01 0.101 0.089 0.12 CD14_Mono LOneK1K
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 2.40e-03 0.391 0.127 0.12 CD14_Mono LOneK1K
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 3.52e-01 0.0857 0.0919 0.121 CD16_Mono LOneK1K
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 8.47e-01 -0.0189 0.0975 0.121 CD16_Mono LOneK1K
ENSG00000146376 ARHGAP18 -121768 sc-eQTL 3.87e-01 -0.0955 0.11 0.121 NK_CD56dim LOneK1K
ENSG00000164483 SAMD3 -777016 sc-eQTL 2.61e-01 -0.0676 0.0599 0.121 NK_CD56dim LOneK1K
ENSG00000198945 L3MBTL3 -425290 sc-eQTL 3.65e-01 0.102 0.112 0.121 NK_CD56dim LOneK1K
ENSG00000227678 AL355581.1 -557770 sc-eQTL 1.38e-02 0.318 0.128 0.121 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000146376 ARHGAP18 -121768 eQTL 0.015 0.0519 0.0213 0.00113 0.0 0.125

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000146376 ARHGAP18 -121768 8.39e-06 1.04e-05 2.27e-06 6.84e-06 2.19e-06 4.24e-06 1.07e-05 2.08e-06 1.06e-05 5.43e-06 1.23e-05 5.9e-06 1.32e-05 3.85e-06 3.46e-06 6.58e-06 4.69e-06 7.72e-06 2.6e-06 3.14e-06 6.01e-06 1.05e-05 7.99e-06 3.39e-06 1.48e-05 4.51e-06 5.53e-06 4.77e-06 1.02e-05 8.01e-06 5.79e-06 1.01e-06 1.19e-06 3.26e-06 5.89e-06 2.59e-06 1.82e-06 1.86e-06 2e-06 1.76e-06 1.2e-06 1.19e-05 1.49e-06 2.64e-07 8.18e-07 1.8e-06 1.47e-06 7.04e-07 4.42e-07
ENSG00000164484 \N -777325 2.64e-07 1.01e-07 3.88e-08 1.82e-07 9.65e-08 9.71e-08 1.38e-07 5.21e-08 1.41e-07 4.4e-08 1.62e-07 7.88e-08 1.26e-07 6.21e-08 5.99e-08 7.5e-08 4.94e-08 1.14e-07 5.75e-08 4.07e-08 1.05e-07 1.26e-07 1.3e-07 4.54e-08 1.33e-07 1.14e-07 1.11e-07 9.15e-08 1.03e-07 1.12e-07 9.58e-08 3.76e-08 3.28e-08 8.68e-08 8.38e-08 4.02e-08 5.01e-08 9.35e-08 7.92e-08 4.47e-08 5.8e-08 1.36e-07 3.91e-08 1.62e-08 5.87e-08 1.66e-08 1.26e-07 4.04e-09 4.85e-08