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Genes within 1Mb (chr6:129455391:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 7.66e-01 0.0212 0.0711 0.41 B L1
ENSG00000152894 PTPRK 934717 sc-eQTL 3.42e-01 -0.0535 0.0561 0.41 B L1
ENSG00000164483 SAMD3 -910034 sc-eQTL 3.23e-01 -0.075 0.0757 0.41 B L1
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 5.33e-01 -0.0465 0.0744 0.41 B L1
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 4.10e-01 -0.0535 0.0649 0.41 CD4T L1
ENSG00000164483 SAMD3 -910034 sc-eQTL 7.50e-01 -0.0208 0.0651 0.41 CD4T L1
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 4.77e-01 0.0427 0.0599 0.41 CD4T L1
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 6.70e-01 -0.0238 0.0558 0.41 CD8T L1
ENSG00000152894 PTPRK 934717 sc-eQTL 9.78e-01 -0.00135 0.0487 0.41 CD8T L1
ENSG00000164483 SAMD3 -910034 sc-eQTL 3.87e-01 0.0311 0.0359 0.41 CD8T L1
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 2.13e-01 0.102 0.0815 0.41 CD8T L1
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 7.98e-01 -0.0243 0.0946 0.405 DC L1
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 9.04e-01 -0.0116 0.0963 0.405 DC L1
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 9.35e-01 0.00457 0.0558 0.41 Mono L1
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 2.58e-01 0.0927 0.0817 0.41 Mono L1
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 4.83e-02 -0.149 0.0748 0.41 NK L1
ENSG00000164483 SAMD3 -910034 sc-eQTL 8.64e-01 -0.00748 0.0436 0.41 NK L1
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 3.92e-01 -0.066 0.0769 0.41 NK L1
ENSG00000227678 AL355581.1 -690788 sc-eQTL 7.06e-01 -0.0336 0.0889 0.41 NK L1
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 5.44e-01 -0.0523 0.0859 0.41 Other_T L1
ENSG00000164483 SAMD3 -910034 sc-eQTL 4.87e-01 -0.0296 0.0425 0.41 Other_T L1
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 2.97e-01 0.0968 0.0926 0.41 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 7.97e-01 0.0274 0.107 0.401 B_Activated L2
ENSG00000152894 PTPRK 934717 sc-eQTL 2.16e-01 -0.128 0.103 0.401 B_Activated L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 9.54e-02 -0.119 0.0709 0.401 B_Activated L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 8.84e-01 -0.0164 0.112 0.401 B_Activated L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 3.08e-02 0.2 0.092 0.41 B_Intermediate L2
ENSG00000152894 PTPRK 934717 sc-eQTL 6.57e-01 -0.0414 0.0932 0.41 B_Intermediate L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 1.16e-01 -0.121 0.0765 0.41 B_Intermediate L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 4.32e-01 -0.0766 0.0974 0.41 B_Intermediate L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 8.46e-01 0.0182 0.0935 0.409 B_Memory L2
ENSG00000152894 PTPRK 934717 sc-eQTL 1.18e-01 -0.141 0.09 0.409 B_Memory L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 1.19e-02 -0.217 0.0855 0.409 B_Memory L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 2.80e-01 -0.1 0.0923 0.409 B_Memory L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 9.98e-01 -0.000224 0.0932 0.41 B_Naive1 L2
ENSG00000152894 PTPRK 934717 sc-eQTL 1.38e-01 -0.104 0.0697 0.41 B_Naive1 L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 4.03e-01 -0.0637 0.0761 0.41 B_Naive1 L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 4.18e-01 -0.0727 0.0895 0.41 B_Naive1 L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 8.97e-01 0.0127 0.0981 0.41 B_Naive2 L2
ENSG00000152894 PTPRK 934717 sc-eQTL 7.06e-01 -0.0293 0.0775 0.41 B_Naive2 L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 2.22e-01 0.0784 0.0639 0.41 B_Naive2 L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 8.10e-01 0.0226 0.0937 0.41 B_Naive2 L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 7.23e-02 -0.17 0.0939 0.411 CD4_CTL L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 8.75e-02 -0.108 0.0626 0.411 CD4_CTL L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 2.56e-01 -0.109 0.0953 0.411 CD4_CTL L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 5.56e-01 -0.0467 0.0792 0.41 CD4_Naive L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 9.35e-01 -0.00639 0.0779 0.41 CD4_Naive L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 5.60e-01 0.039 0.0667 0.41 CD4_Naive L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 8.88e-01 -0.0124 0.0876 0.41 CD4_TCM L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 8.32e-01 -0.0158 0.0744 0.41 CD4_TCM L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 5.78e-01 0.0382 0.0684 0.41 CD4_TCM L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 4.54e-01 0.0683 0.0911 0.41 CD4_TEM L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 9.85e-01 -0.00116 0.0611 0.41 CD4_TEM L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 3.24e-01 0.0812 0.0821 0.41 CD4_TEM L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 7.99e-01 0.0233 0.0912 0.41 CD8_CTL L2
ENSG00000152894 PTPRK 934717 sc-eQTL 4.53e-01 -0.0652 0.0867 0.41 CD8_CTL L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 9.36e-01 -0.00476 0.0593 0.41 CD8_CTL L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 1.89e-01 0.121 0.092 0.41 CD8_CTL L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 3.80e-01 -0.076 0.0864 0.41 CD8_Naive L2
ENSG00000152894 PTPRK 934717 sc-eQTL 9.43e-01 -0.00491 0.0681 0.41 CD8_Naive L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 1.28e-01 0.118 0.0771 0.41 CD8_Naive L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 5.08e-01 0.0496 0.0748 0.41 CD8_Naive L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 5.36e-01 -0.0575 0.0929 0.412 CD8_TCM L2
ENSG00000152894 PTPRK 934717 sc-eQTL 6.12e-02 -0.158 0.0839 0.412 CD8_TCM L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 8.16e-01 -0.0201 0.0865 0.412 CD8_TCM L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 3.12e-01 0.102 0.101 0.412 CD8_TCM L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 3.85e-01 -0.0795 0.0914 0.406 CD8_TEM L2
ENSG00000152894 PTPRK 934717 sc-eQTL 5.89e-01 0.0423 0.0782 0.406 CD8_TEM L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 9.54e-01 0.00407 0.0711 0.406 CD8_TEM L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 2.51e-01 -0.113 0.0984 0.406 CD8_TEM L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 2.89e-01 -0.0969 0.091 0.407 MAIT L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 2.77e-01 -0.0617 0.0566 0.407 MAIT L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 6.94e-02 0.163 0.0894 0.407 MAIT L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 2.85e-01 -0.0968 0.0904 0.409 NK_CD56bright L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 6.24e-01 -0.0385 0.0782 0.409 NK_CD56bright L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 1.05e-01 -0.153 0.094 0.409 NK_CD56bright L2
ENSG00000227678 AL355581.1 -690788 sc-eQTL 9.70e-01 0.00341 0.0907 0.409 NK_CD56bright L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 1.36e-01 -0.125 0.0834 0.409 NK_CD56dim L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 8.23e-01 0.0102 0.0456 0.409 NK_CD56dim L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 4.23e-01 -0.0686 0.0854 0.409 NK_CD56dim L2
ENSG00000227678 AL355581.1 -690788 sc-eQTL 8.14e-01 -0.0217 0.0921 0.409 NK_CD56dim L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 5.09e-01 0.0616 0.0931 0.42 NK_HLA L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 8.47e-01 0.0158 0.0819 0.42 NK_HLA L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 8.35e-01 -0.0201 0.0963 0.42 NK_HLA L2
ENSG00000227678 AL355581.1 -690788 sc-eQTL 8.49e-01 0.0173 0.0906 0.42 NK_HLA L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 1.64e-01 -0.114 0.0816 0.409 NK_cytokine L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 5.50e-01 -0.0326 0.0544 0.409 NK_cytokine L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 9.48e-01 0.00583 0.0888 0.409 NK_cytokine L2
ENSG00000227678 AL355581.1 -690788 sc-eQTL 5.38e-01 0.058 0.094 0.409 NK_cytokine L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 7.26e-01 -0.0456 0.13 0.378 PB L2
ENSG00000152894 PTPRK 934717 sc-eQTL 9.13e-01 0.011 0.101 0.378 PB L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 6.15e-01 0.0596 0.118 0.378 PB L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 2.44e-01 0.133 0.113 0.378 PB L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 2.29e-01 -0.115 0.0955 0.411 Pro_T L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 8.66e-01 0.00931 0.0552 0.411 Pro_T L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 4.60e-03 -0.254 0.0886 0.411 Pro_T L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 1.68e-01 -0.125 0.0904 0.41 Treg L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 8.78e-02 -0.136 0.0793 0.41 Treg L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 6.83e-01 -0.0384 0.094 0.41 Treg L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 1.69e-01 -0.141 0.102 0.402 cDC L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 5.75e-01 -0.0561 0.0998 0.402 cDC L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 4.85e-01 -0.0475 0.0679 0.41 cMono_IL1B L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 6.17e-01 0.0467 0.0933 0.41 cMono_IL1B L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 5.29e-01 0.0472 0.0749 0.41 cMono_S100A L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 9.17e-01 0.00999 0.0956 0.41 cMono_S100A L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 9.64e-01 -0.00503 0.11 0.415 gdT L2
ENSG00000164483 SAMD3 -910034 sc-eQTL 8.18e-01 0.0214 0.0928 0.415 gdT L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 5.60e-02 0.223 0.116 0.415 gdT L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 9.10e-01 -0.00961 0.0852 0.4 intMono L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 8.61e-02 -0.176 0.102 0.4 intMono L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 7.91e-01 0.0197 0.0743 0.41 ncMono L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 6.39e-01 0.0332 0.0708 0.41 ncMono L2
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 7.33e-01 -0.0334 0.0976 0.404 pDC L2
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 9.45e-01 0.00685 0.0983 0.404 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 5.49e-02 0.165 0.0852 0.41 B_Memory LOneK1K
ENSG00000152894 PTPRK 934717 sc-eQTL 1.27e-01 -0.128 0.0834 0.41 B_Memory LOneK1K
ENSG00000164483 SAMD3 -910034 sc-eQTL 2.05e-03 -0.258 0.0827 0.41 B_Memory LOneK1K
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 2.91e-01 -0.0955 0.0903 0.41 B_Memory LOneK1K
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 9.38e-01 -0.00724 0.0929 0.41 B_Naive LOneK1K
ENSG00000152894 PTPRK 934717 sc-eQTL 2.25e-01 -0.0769 0.0631 0.41 B_Naive LOneK1K
ENSG00000164483 SAMD3 -910034 sc-eQTL 1.00e+00 -1.39e-05 0.0834 0.41 B_Naive LOneK1K
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 6.13e-01 -0.0449 0.0887 0.41 B_Naive LOneK1K
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 6.98e-01 -0.0245 0.0632 0.41 CD14_Mono LOneK1K
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 3.47e-01 0.0868 0.0921 0.41 CD14_Mono LOneK1K
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 5.34e-01 0.0392 0.063 0.409 CD16_Mono LOneK1K
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 7.83e-01 -0.0184 0.0668 0.409 CD16_Mono LOneK1K
ENSG00000146376 ARHGAP18 -254786 sc-eQTL 1.04e-01 -0.125 0.0764 0.409 NK_CD56dim LOneK1K
ENSG00000164483 SAMD3 -910034 sc-eQTL 9.13e-01 0.00459 0.0419 0.409 NK_CD56dim LOneK1K
ENSG00000198945 L3MBTL3 -558308 sc-eQTL 6.23e-01 -0.0385 0.0781 0.409 NK_CD56dim LOneK1K
ENSG00000227678 AL355581.1 -690788 sc-eQTL 8.59e-01 -0.0161 0.0904 0.409 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000164484 \N -910343 2.76e-07 1.27e-07 4.48e-08 2.05e-07 9.24e-08 8.33e-08 1.67e-07 5.53e-08 1.45e-07 5.67e-08 1.57e-07 9e-08 1.71e-07 7.37e-08 6.04e-08 7.36e-08 4.24e-08 1.33e-07 5.82e-08 4.3e-08 1.21e-07 1.24e-07 1.45e-07 2.93e-08 1.68e-07 1.14e-07 1.18e-07 9.61e-08 1.16e-07 9.88e-08 9.92e-08 2.93e-08 3.61e-08 8.89e-08 3.02e-08 3.65e-08 5.37e-08 8.63e-08 6.37e-08 3.71e-08 4.94e-08 1.46e-07 5.21e-08 1.28e-08 4.7e-08 1.87e-08 1.2e-07 1.88e-09 4.94e-08