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Genes within 1Mb (chr6:129394144:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 8.05e-01 -0.0296 0.12 0.91 B L1
ENSG00000152894 PTPRK 873470 sc-eQTL 4.36e-01 0.0738 0.0944 0.91 B L1
ENSG00000164483 SAMD3 -971281 sc-eQTL 5.29e-01 -0.0803 0.127 0.91 B L1
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 9.49e-01 0.00797 0.125 0.91 B L1
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 7.30e-02 -0.196 0.109 0.91 CD4T L1
ENSG00000164483 SAMD3 -971281 sc-eQTL 9.88e-02 0.181 0.109 0.91 CD4T L1
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 3.64e-01 -0.0919 0.101 0.91 CD4T L1
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 5.25e-01 -0.0594 0.0933 0.91 CD8T L1
ENSG00000152894 PTPRK 873470 sc-eQTL 8.88e-01 -0.0115 0.0814 0.91 CD8T L1
ENSG00000164483 SAMD3 -971281 sc-eQTL 6.77e-02 0.11 0.0596 0.91 CD8T L1
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 6.24e-01 0.0672 0.137 0.91 CD8T L1
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 8.94e-01 0.0216 0.162 0.91 DC L1
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 7.20e-01 -0.059 0.165 0.91 DC L1
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 3.28e-01 -0.09 0.0917 0.91 Mono L1
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 3.05e-01 0.138 0.135 0.91 Mono L1
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 3.86e-01 0.113 0.13 0.91 NK L1
ENSG00000164483 SAMD3 -971281 sc-eQTL 2.55e-01 0.0855 0.075 0.91 NK L1
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 2.72e-02 -0.292 0.131 0.91 NK L1
ENSG00000227678 AL355581.1 -752035 sc-eQTL 3.63e-01 0.14 0.153 0.91 NK L1
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 2.62e-01 0.161 0.143 0.91 Other_T L1
ENSG00000164483 SAMD3 -971281 sc-eQTL 7.96e-01 -0.0183 0.0709 0.91 Other_T L1
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 1.76e-01 -0.209 0.154 0.91 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 3.73e-01 0.168 0.188 0.921 B_Activated L2
ENSG00000152894 PTPRK 873470 sc-eQTL 2.68e-01 0.202 0.182 0.921 B_Activated L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 8.28e-02 0.218 0.125 0.921 B_Activated L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 4.91e-01 0.137 0.198 0.921 B_Activated L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 4.20e-02 -0.312 0.152 0.912 B_Intermediate L2
ENSG00000152894 PTPRK 873470 sc-eQTL 3.12e-01 0.156 0.154 0.912 B_Intermediate L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 8.77e-02 -0.217 0.127 0.912 B_Intermediate L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 8.09e-01 -0.039 0.161 0.912 B_Intermediate L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 5.85e-01 -0.0856 0.157 0.909 B_Memory L2
ENSG00000152894 PTPRK 873470 sc-eQTL 7.54e-01 0.0476 0.152 0.909 B_Memory L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 3.13e-01 0.146 0.145 0.909 B_Memory L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 1.97e-01 0.2 0.154 0.909 B_Memory L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 8.84e-01 -0.0235 0.161 0.91 B_Naive1 L2
ENSG00000152894 PTPRK 873470 sc-eQTL 4.06e-01 -0.101 0.121 0.91 B_Naive1 L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 2.75e-02 -0.289 0.13 0.91 B_Naive1 L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 5.84e-01 -0.0849 0.155 0.91 B_Naive1 L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 1.52e-01 0.242 0.168 0.91 B_Naive2 L2
ENSG00000152894 PTPRK 873470 sc-eQTL 8.04e-01 0.0333 0.134 0.91 B_Naive2 L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 5.69e-01 0.0631 0.111 0.91 B_Naive2 L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 2.78e-01 0.175 0.161 0.91 B_Naive2 L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 5.00e-01 -0.108 0.16 0.911 CD4_CTL L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 5.29e-01 0.0672 0.107 0.911 CD4_CTL L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 2.42e-01 0.189 0.161 0.911 CD4_CTL L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 3.90e-01 -0.114 0.133 0.91 CD4_Naive L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 1.93e-01 0.17 0.13 0.91 CD4_Naive L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 1.42e-01 -0.164 0.111 0.91 CD4_Naive L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 1.70e-01 -0.2 0.146 0.91 CD4_TCM L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 1.53e-01 0.177 0.124 0.91 CD4_TCM L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 5.53e-01 0.0678 0.114 0.91 CD4_TCM L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 6.77e-01 -0.0652 0.156 0.91 CD4_TEM L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 1.86e-01 0.138 0.104 0.91 CD4_TEM L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 5.43e-01 -0.086 0.141 0.91 CD4_TEM L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 6.40e-01 -0.0713 0.152 0.91 CD8_CTL L2
ENSG00000152894 PTPRK 873470 sc-eQTL 2.39e-01 -0.171 0.144 0.91 CD8_CTL L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 6.64e-01 -0.043 0.0988 0.91 CD8_CTL L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 1.76e-01 0.208 0.153 0.91 CD8_CTL L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 5.28e-01 -0.0914 0.145 0.91 CD8_Naive L2
ENSG00000152894 PTPRK 873470 sc-eQTL 6.58e-01 -0.0504 0.114 0.91 CD8_Naive L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 9.82e-03 0.333 0.128 0.91 CD8_Naive L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 8.40e-01 0.0253 0.125 0.91 CD8_Naive L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 6.13e-01 -0.0796 0.157 0.907 CD8_TCM L2
ENSG00000152894 PTPRK 873470 sc-eQTL 6.51e-01 0.0648 0.143 0.907 CD8_TCM L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 5.64e-01 -0.0844 0.146 0.907 CD8_TCM L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 9.54e-02 -0.284 0.17 0.907 CD8_TCM L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 8.09e-01 0.0369 0.152 0.911 CD8_TEM L2
ENSG00000152894 PTPRK 873470 sc-eQTL 6.52e-01 0.0588 0.13 0.911 CD8_TEM L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 1.26e-01 -0.181 0.118 0.911 CD8_TEM L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 1.11e-01 -0.261 0.163 0.911 CD8_TEM L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 6.81e-01 0.0624 0.152 0.909 MAIT L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 5.79e-01 0.0523 0.0942 0.909 MAIT L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 1.65e-01 -0.208 0.149 0.909 MAIT L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 1.06e-02 -0.393 0.152 0.916 NK_CD56bright L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 6.01e-01 0.07 0.134 0.916 NK_CD56bright L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 7.38e-01 0.0541 0.161 0.916 NK_CD56bright L2
ENSG00000227678 AL355581.1 -752035 sc-eQTL 2.46e-01 0.179 0.154 0.916 NK_CD56bright L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 5.58e-01 0.0853 0.145 0.909 NK_CD56dim L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 4.52e-01 0.0595 0.0789 0.909 NK_CD56dim L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 2.81e-01 -0.16 0.148 0.909 NK_CD56dim L2
ENSG00000227678 AL355581.1 -752035 sc-eQTL 6.13e-01 0.0807 0.16 0.909 NK_CD56dim L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 7.64e-02 0.273 0.153 0.906 NK_HLA L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 7.60e-01 0.0414 0.136 0.906 NK_HLA L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 5.88e-01 0.0866 0.159 0.906 NK_HLA L2
ENSG00000227678 AL355581.1 -752035 sc-eQTL 1.13e-01 0.237 0.149 0.906 NK_HLA L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 9.55e-01 -0.00804 0.141 0.909 NK_cytokine L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 2.33e-01 0.112 0.0932 0.909 NK_cytokine L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 1.76e-02 -0.36 0.151 0.909 NK_cytokine L2
ENSG00000227678 AL355581.1 -752035 sc-eQTL 3.97e-01 -0.137 0.161 0.909 NK_cytokine L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 9.90e-01 -0.00252 0.207 0.919 PB L2
ENSG00000152894 PTPRK 873470 sc-eQTL 6.93e-01 0.0638 0.161 0.919 PB L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 1.68e-01 0.26 0.187 0.919 PB L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 4.93e-01 -0.125 0.182 0.919 PB L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 2.74e-01 0.173 0.158 0.909 Pro_T L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 1.72e-01 -0.124 0.0907 0.909 Pro_T L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 7.47e-01 0.0481 0.149 0.909 Pro_T L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 1.23e-01 -0.23 0.149 0.91 Treg L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 6.45e-02 0.243 0.131 0.91 Treg L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 1.47e-01 -0.224 0.154 0.91 Treg L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 8.34e-02 0.306 0.176 0.915 cDC L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 9.66e-01 -0.00727 0.172 0.915 cDC L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 3.21e-01 -0.112 0.113 0.91 cMono_IL1B L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 4.36e-01 0.121 0.155 0.91 cMono_IL1B L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 2.18e-01 -0.155 0.125 0.91 cMono_S100A L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 9.21e-03 0.415 0.158 0.91 cMono_S100A L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 7.10e-01 -0.0712 0.191 0.906 gdT L2
ENSG00000164483 SAMD3 -971281 sc-eQTL 3.03e-01 -0.166 0.16 0.906 gdT L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 2.60e-01 -0.229 0.202 0.906 gdT L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 8.64e-01 0.0243 0.142 0.911 intMono L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 7.03e-01 -0.0655 0.171 0.911 intMono L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 1.18e-01 -0.197 0.125 0.912 ncMono L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 8.98e-01 -0.0154 0.12 0.912 ncMono L2
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 6.36e-01 0.0847 0.179 0.918 pDC L2
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 4.20e-02 -0.365 0.178 0.918 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 1.18e-01 -0.224 0.143 0.91 B_Memory LOneK1K
ENSG00000152894 PTPRK 873470 sc-eQTL 1.06e-01 0.226 0.139 0.91 B_Memory LOneK1K
ENSG00000164483 SAMD3 -971281 sc-eQTL 9.77e-01 -0.00412 0.141 0.91 B_Memory LOneK1K
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 5.31e-01 0.0947 0.151 0.91 B_Memory LOneK1K
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 5.76e-01 0.0886 0.158 0.91 B_Naive LOneK1K
ENSG00000152894 PTPRK 873470 sc-eQTL 9.45e-01 -0.00752 0.108 0.91 B_Naive LOneK1K
ENSG00000164483 SAMD3 -971281 sc-eQTL 2.20e-01 -0.175 0.142 0.91 B_Naive LOneK1K
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 8.96e-01 0.0199 0.151 0.91 B_Naive LOneK1K
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 1.77e-01 -0.14 0.103 0.91 CD14_Mono LOneK1K
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 2.23e-02 0.345 0.15 0.91 CD14_Mono LOneK1K
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 4.39e-01 -0.0835 0.108 0.909 CD16_Mono LOneK1K
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 4.42e-01 -0.0878 0.114 0.909 CD16_Mono LOneK1K
ENSG00000146376 ARHGAP18 -316033 sc-eQTL 1.32e-01 0.2 0.132 0.909 NK_CD56dim LOneK1K
ENSG00000164483 SAMD3 -971281 sc-eQTL 3.25e-01 0.0711 0.0721 0.909 NK_CD56dim LOneK1K
ENSG00000198945 L3MBTL3 -619555 sc-eQTL 3.08e-02 -0.29 0.133 0.909 NK_CD56dim LOneK1K
ENSG00000227678 AL355581.1 -752035 sc-eQTL 5.90e-01 0.0841 0.156 0.909 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000198945 L3MBTL3 -619555 eQTL 2.46e-02 -0.0853 0.0379 0.00144 0.0 0.0883

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina