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Genes within 1Mb (chr6:129378454:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 1.62e-01 0.0915 0.0652 0.4 B L1
ENSG00000152894 PTPRK 857780 sc-eQTL 7.61e-01 -0.0158 0.0517 0.4 B L1
ENSG00000164483 SAMD3 -986971 sc-eQTL 6.92e-01 -0.0277 0.0698 0.4 B L1
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 6.29e-02 0.127 0.068 0.4 B L1
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 1.65e-01 -0.0835 0.06 0.4 CD4T L1
ENSG00000164483 SAMD3 -986971 sc-eQTL 8.62e-01 -0.0105 0.0603 0.4 CD4T L1
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 5.04e-01 0.0372 0.0556 0.4 CD4T L1
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 9.34e-02 0.0858 0.0509 0.4 CD8T L1
ENSG00000152894 PTPRK 857780 sc-eQTL 5.71e-01 -0.0253 0.0446 0.4 CD8T L1
ENSG00000164483 SAMD3 -986971 sc-eQTL 8.65e-01 0.00563 0.033 0.4 CD8T L1
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 1.72e-02 0.178 0.074 0.4 CD8T L1
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 3.11e-01 0.0866 0.0853 0.403 DC L1
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 9.40e-01 0.00657 0.0871 0.403 DC L1
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 1.87e-01 -0.0676 0.0511 0.4 Mono L1
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 2.05e-01 -0.0953 0.075 0.4 Mono L1
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 4.50e-01 0.0534 0.0704 0.401 NK L1
ENSG00000164483 SAMD3 -986971 sc-eQTL 1.51e-01 0.0585 0.0406 0.401 NK L1
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 8.12e-01 0.0171 0.072 0.401 NK L1
ENSG00000227678 AL355581.1 -767725 sc-eQTL 1.25e-01 0.127 0.0826 0.401 NK L1
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 9.45e-01 0.00546 0.0785 0.4 Other_T L1
ENSG00000164483 SAMD3 -986971 sc-eQTL 6.99e-01 -0.0151 0.0388 0.4 Other_T L1
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 5.53e-01 0.0503 0.0847 0.4 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 3.40e-01 -0.0939 0.0982 0.418 B_Activated L2
ENSG00000152894 PTPRK 857780 sc-eQTL 8.61e-01 -0.0167 0.0952 0.418 B_Activated L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 4.12e-01 0.0542 0.0658 0.418 B_Activated L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 6.66e-01 0.0448 0.104 0.418 B_Activated L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 7.16e-01 0.0305 0.0838 0.401 B_Intermediate L2
ENSG00000152894 PTPRK 857780 sc-eQTL 7.35e-01 0.0285 0.084 0.401 B_Intermediate L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 7.66e-01 -0.0207 0.0694 0.401 B_Intermediate L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 1.65e-01 0.122 0.0875 0.401 B_Intermediate L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 6.79e-01 0.0353 0.0852 0.399 B_Memory L2
ENSG00000152894 PTPRK 857780 sc-eQTL 4.22e-01 -0.0663 0.0824 0.399 B_Memory L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 6.52e-01 -0.0357 0.079 0.399 B_Memory L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 7.25e-01 0.0297 0.0844 0.399 B_Memory L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 5.25e-02 0.168 0.0862 0.4 B_Naive1 L2
ENSG00000152894 PTPRK 857780 sc-eQTL 5.49e-01 -0.0392 0.0653 0.4 B_Naive1 L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 4.64e-01 0.0522 0.0711 0.4 B_Naive1 L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 3.24e-01 0.0826 0.0835 0.4 B_Naive1 L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 3.80e-01 0.0803 0.0913 0.399 B_Naive2 L2
ENSG00000152894 PTPRK 857780 sc-eQTL 9.06e-01 0.00857 0.0724 0.399 B_Naive2 L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 7.86e-01 -0.0163 0.0599 0.399 B_Naive2 L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 5.22e-01 0.056 0.0873 0.399 B_Naive2 L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 1.64e-01 -0.12 0.0862 0.393 CD4_CTL L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 8.67e-01 -0.00965 0.0577 0.393 CD4_CTL L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 5.38e-02 -0.168 0.0866 0.393 CD4_CTL L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 8.90e-01 0.0101 0.0732 0.4 CD4_Naive L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 6.06e-01 -0.0371 0.0719 0.4 CD4_Naive L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 1.50e-01 0.0886 0.0613 0.4 CD4_Naive L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 8.21e-01 -0.018 0.0796 0.4 CD4_TCM L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 8.46e-01 0.0131 0.0676 0.4 CD4_TCM L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 5.39e-01 -0.0383 0.0622 0.4 CD4_TCM L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 2.17e-01 -0.105 0.0851 0.4 CD4_TEM L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 3.73e-01 0.051 0.0571 0.4 CD4_TEM L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 9.83e-01 0.00167 0.0771 0.4 CD4_TEM L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 2.77e-01 0.0898 0.0823 0.4 CD8_CTL L2
ENSG00000152894 PTPRK 857780 sc-eQTL 1.51e-01 -0.113 0.0782 0.4 CD8_CTL L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 1.93e-01 -0.0697 0.0534 0.4 CD8_CTL L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 8.49e-02 0.144 0.083 0.4 CD8_CTL L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 5.96e-01 -0.042 0.0791 0.4 CD8_Naive L2
ENSG00000152894 PTPRK 857780 sc-eQTL 9.39e-01 0.00473 0.0623 0.4 CD8_Naive L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 2.57e-01 0.0804 0.0707 0.4 CD8_Naive L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 2.60e-01 0.0771 0.0683 0.4 CD8_Naive L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 6.27e-01 0.0411 0.0845 0.396 CD8_TCM L2
ENSG00000152894 PTPRK 857780 sc-eQTL 2.06e-01 -0.0974 0.0767 0.396 CD8_TCM L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 1.30e-01 -0.119 0.0782 0.396 CD8_TCM L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 4.39e-01 0.0711 0.0917 0.396 CD8_TCM L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 4.35e-01 0.0652 0.0834 0.406 CD8_TEM L2
ENSG00000152894 PTPRK 857780 sc-eQTL 9.56e-01 0.00398 0.0714 0.406 CD8_TEM L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 1.77e-01 -0.0874 0.0646 0.406 CD8_TEM L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 2.50e-01 0.104 0.0898 0.406 CD8_TEM L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 9.70e-01 0.00324 0.0851 0.396 MAIT L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 6.77e-02 0.0964 0.0525 0.396 MAIT L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 7.16e-02 0.151 0.0833 0.396 MAIT L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 1.04e-01 -0.134 0.0823 0.402 NK_CD56bright L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 9.95e-01 -0.000492 0.0715 0.402 NK_CD56bright L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 5.16e-01 -0.0561 0.0863 0.402 NK_CD56bright L2
ENSG00000227678 AL355581.1 -767725 sc-eQTL 6.85e-01 -0.0336 0.0829 0.402 NK_CD56bright L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 4.30e-01 0.0611 0.0773 0.401 NK_CD56dim L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 1.60e-01 0.0591 0.0419 0.401 NK_CD56dim L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 1.29e-01 0.12 0.0787 0.401 NK_CD56dim L2
ENSG00000227678 AL355581.1 -767725 sc-eQTL 1.79e-01 0.114 0.0847 0.401 NK_CD56dim L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 2.85e-01 0.0919 0.0857 0.397 NK_HLA L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 9.90e-01 0.000932 0.0755 0.397 NK_HLA L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 1.02e-01 0.145 0.0883 0.397 NK_HLA L2
ENSG00000227678 AL355581.1 -767725 sc-eQTL 9.91e-01 0.000941 0.0836 0.397 NK_HLA L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 9.02e-01 -0.00935 0.076 0.401 NK_cytokine L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 9.73e-01 -0.00169 0.0505 0.401 NK_cytokine L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 1.72e-01 -0.112 0.082 0.401 NK_cytokine L2
ENSG00000227678 AL355581.1 -767725 sc-eQTL 4.12e-01 0.0717 0.0872 0.401 NK_cytokine L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 4.42e-01 0.0864 0.112 0.422 PB L2
ENSG00000152894 PTPRK 857780 sc-eQTL 3.60e-01 0.0798 0.0869 0.422 PB L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 6.48e-02 -0.188 0.101 0.422 PB L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 1.06e-02 0.248 0.0956 0.422 PB L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 7.42e-01 0.0283 0.0856 0.402 Pro_T L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 6.61e-01 -0.0217 0.0494 0.402 Pro_T L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 4.46e-02 -0.162 0.0799 0.402 Pro_T L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 5.39e-01 -0.0503 0.0818 0.4 Treg L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 4.97e-01 0.049 0.072 0.4 Treg L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 5.63e-01 0.0491 0.0847 0.4 Treg L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 1.04e-01 0.152 0.0932 0.405 cDC L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 4.30e-01 0.0721 0.0911 0.405 cDC L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 4.03e-01 -0.0527 0.0628 0.4 cMono_IL1B L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 9.48e-02 -0.144 0.0858 0.4 cMono_IL1B L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 7.19e-01 -0.0252 0.07 0.4 cMono_S100A L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 4.83e-01 0.0627 0.0893 0.4 cMono_S100A L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 9.12e-01 -0.0113 0.102 0.379 gdT L2
ENSG00000164483 SAMD3 -986971 sc-eQTL 2.97e-01 -0.0898 0.0858 0.379 gdT L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 9.37e-01 -0.00855 0.109 0.379 gdT L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 7.13e-01 0.0287 0.0781 0.407 intMono L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 5.79e-01 -0.0524 0.0943 0.407 intMono L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 3.73e-01 -0.0605 0.0677 0.405 ncMono L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 4.57e-01 -0.0481 0.0646 0.405 ncMono L2
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 7.64e-01 -0.0278 0.0924 0.41 pDC L2
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 6.31e-01 -0.0448 0.093 0.41 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 8.24e-01 0.0174 0.078 0.4 B_Memory LOneK1K
ENSG00000152894 PTPRK 857780 sc-eQTL 7.41e-01 -0.0252 0.076 0.4 B_Memory LOneK1K
ENSG00000164483 SAMD3 -986971 sc-eQTL 8.51e-01 0.0144 0.0768 0.4 B_Memory LOneK1K
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 1.84e-01 0.109 0.0818 0.4 B_Memory LOneK1K
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 5.75e-02 0.163 0.0853 0.4 B_Naive LOneK1K
ENSG00000152894 PTPRK 857780 sc-eQTL 9.69e-01 -0.00228 0.0587 0.4 B_Naive LOneK1K
ENSG00000164483 SAMD3 -986971 sc-eQTL 6.89e-01 0.031 0.0772 0.4 B_Naive LOneK1K
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 3.09e-01 0.0837 0.082 0.4 B_Naive LOneK1K
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 2.39e-01 -0.069 0.0584 0.4 CD14_Mono LOneK1K
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 4.14e-01 -0.0699 0.0854 0.4 CD14_Mono LOneK1K
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 9.73e-01 -0.00199 0.0581 0.403 CD16_Mono LOneK1K
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 4.55e-01 -0.046 0.0614 0.403 CD16_Mono LOneK1K
ENSG00000146376 ARHGAP18 -331723 sc-eQTL 4.21e-01 0.0579 0.0718 0.401 NK_CD56dim LOneK1K
ENSG00000164483 SAMD3 -986971 sc-eQTL 2.91e-01 0.0413 0.039 0.401 NK_CD56dim LOneK1K
ENSG00000198945 L3MBTL3 -635245 sc-eQTL 5.83e-01 0.0401 0.073 0.401 NK_CD56dim LOneK1K
ENSG00000227678 AL355581.1 -767725 sc-eQTL 6.91e-02 0.153 0.0838 0.401 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000164484 TMEM200A -987280 eQTL 0.0091 0.0827 0.0316 0.00144 0.0 0.402

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina