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Genes within 1Mb (chr6:128005886:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 662277 sc-eQTL 3.81e-01 -0.0446 0.0508 0.214 B L1
ENSG00000118518 RNF146 739276 sc-eQTL 7.96e-01 -0.021 0.0811 0.214 B L1
ENSG00000152894 PTPRK -514788 sc-eQTL 4.31e-01 0.0485 0.0615 0.214 B L1
ENSG00000093144 ECHDC1 662277 sc-eQTL 7.42e-01 0.0206 0.0625 0.214 CD4T L1
ENSG00000118518 RNF146 739276 sc-eQTL 5.74e-01 0.048 0.0853 0.214 CD4T L1
ENSG00000172673 THEMIS 87255 sc-eQTL 9.89e-01 -0.000873 0.0651 0.214 CD4T L1
ENSG00000214338 SOGA3 486695 sc-eQTL 3.09e-01 -0.0564 0.0552 0.214 CD4T L1
ENSG00000093144 ECHDC1 662277 sc-eQTL 2.50e-01 0.0893 0.0775 0.214 CD8T L1
ENSG00000118518 RNF146 739276 sc-eQTL 8.97e-01 -0.0129 0.0999 0.214 CD8T L1
ENSG00000152894 PTPRK -514788 sc-eQTL 9.66e-01 0.00234 0.0542 0.214 CD8T L1
ENSG00000172673 THEMIS 87255 sc-eQTL 1.92e-02 -0.181 0.0765 0.214 CD8T L1
ENSG00000227945 AL590006.1 -22000 sc-eQTL 1.42e-01 -0.114 0.0772 0.214 CD8T L1
ENSG00000093144 ECHDC1 662277 sc-eQTL 3.99e-01 -0.0716 0.0847 0.218 DC L1
ENSG00000118518 RNF146 739276 sc-eQTL 9.09e-01 -0.0119 0.104 0.218 DC L1
ENSG00000093144 ECHDC1 662277 sc-eQTL 2.84e-01 0.0659 0.0614 0.214 Mono L1
ENSG00000118518 RNF146 739276 sc-eQTL 6.64e-01 -0.0298 0.0684 0.214 Mono L1
ENSG00000093144 ECHDC1 662277 sc-eQTL 5.46e-01 -0.0456 0.0754 0.212 NK L1
ENSG00000118518 RNF146 739276 sc-eQTL 6.36e-01 -0.0413 0.0872 0.212 NK L1
ENSG00000172673 THEMIS 87255 sc-eQTL 1.41e-01 0.145 0.0982 0.212 NK L1
ENSG00000093144 ECHDC1 662277 sc-eQTL 5.21e-01 -0.0445 0.0693 0.214 Other_T L1
ENSG00000118518 RNF146 739276 sc-eQTL 6.25e-01 -0.0488 0.0997 0.214 Other_T L1
ENSG00000172673 THEMIS 87255 sc-eQTL 8.20e-01 0.0165 0.0725 0.214 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 662277 sc-eQTL 7.88e-01 0.0322 0.12 0.219 B_Activated L2
ENSG00000118518 RNF146 739276 sc-eQTL 6.92e-01 -0.0481 0.121 0.219 B_Activated L2
ENSG00000152894 PTPRK -514788 sc-eQTL 2.56e-01 -0.126 0.111 0.219 B_Activated L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 1.20e-01 0.125 0.0801 0.215 B_Intermediate L2
ENSG00000118518 RNF146 739276 sc-eQTL 2.01e-01 0.132 0.103 0.215 B_Intermediate L2
ENSG00000152894 PTPRK -514788 sc-eQTL 3.29e-01 0.0986 0.101 0.215 B_Intermediate L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 2.44e-01 -0.106 0.0907 0.211 B_Memory L2
ENSG00000118518 RNF146 739276 sc-eQTL 8.85e-01 -0.0153 0.106 0.211 B_Memory L2
ENSG00000152894 PTPRK -514788 sc-eQTL 3.69e-01 0.0883 0.0981 0.211 B_Memory L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 7.77e-01 -0.0174 0.0613 0.214 B_Naive1 L2
ENSG00000118518 RNF146 739276 sc-eQTL 8.67e-01 0.0162 0.0963 0.214 B_Naive1 L2
ENSG00000152894 PTPRK -514788 sc-eQTL 9.74e-01 -0.00255 0.0778 0.214 B_Naive1 L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 2.03e-01 -0.101 0.0789 0.212 B_Naive2 L2
ENSG00000118518 RNF146 739276 sc-eQTL 3.98e-01 -0.0927 0.11 0.212 B_Naive2 L2
ENSG00000152894 PTPRK -514788 sc-eQTL 8.91e-01 0.012 0.0875 0.212 B_Naive2 L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 8.62e-01 0.019 0.11 0.214 CD4_CTL L2
ENSG00000118518 RNF146 739276 sc-eQTL 6.51e-01 0.0486 0.107 0.214 CD4_CTL L2
ENSG00000172673 THEMIS 87255 sc-eQTL 4.70e-01 -0.0524 0.0724 0.214 CD4_CTL L2
ENSG00000214338 SOGA3 486695 sc-eQTL 6.28e-01 0.047 0.0968 0.214 CD4_CTL L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 1.60e-01 0.107 0.0758 0.214 CD4_Naive L2
ENSG00000118518 RNF146 739276 sc-eQTL 8.82e-01 -0.0136 0.0911 0.214 CD4_Naive L2
ENSG00000172673 THEMIS 87255 sc-eQTL 8.80e-01 -0.00985 0.0654 0.214 CD4_Naive L2
ENSG00000214338 SOGA3 486695 sc-eQTL 2.87e-01 -0.0663 0.0621 0.214 CD4_Naive L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 2.03e-01 -0.1 0.0783 0.214 CD4_TCM L2
ENSG00000118518 RNF146 739276 sc-eQTL 3.84e-01 0.0887 0.102 0.214 CD4_TCM L2
ENSG00000172673 THEMIS 87255 sc-eQTL 9.23e-01 -0.00723 0.0751 0.214 CD4_TCM L2
ENSG00000214338 SOGA3 486695 sc-eQTL 4.96e-01 -0.0526 0.0772 0.214 CD4_TCM L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 1.47e-01 -0.135 0.0925 0.214 CD4_TEM L2
ENSG00000118518 RNF146 739276 sc-eQTL 6.15e-01 0.0532 0.106 0.214 CD4_TEM L2
ENSG00000172673 THEMIS 87255 sc-eQTL 5.73e-01 -0.0477 0.0845 0.214 CD4_TEM L2
ENSG00000214338 SOGA3 486695 sc-eQTL 4.64e-03 -0.246 0.0858 0.214 CD4_TEM L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 4.81e-01 0.0669 0.0949 0.214 CD8_CTL L2
ENSG00000118518 RNF146 739276 sc-eQTL 8.80e-01 0.017 0.112 0.214 CD8_CTL L2
ENSG00000152894 PTPRK -514788 sc-eQTL 7.38e-01 0.0318 0.0949 0.214 CD8_CTL L2
ENSG00000172673 THEMIS 87255 sc-eQTL 1.61e-02 -0.194 0.0801 0.214 CD8_CTL L2
ENSG00000227945 AL590006.1 -22000 sc-eQTL 6.03e-01 0.0419 0.0806 0.214 CD8_CTL L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 9.59e-01 -0.00496 0.0959 0.214 CD8_Naive L2
ENSG00000118518 RNF146 739276 sc-eQTL 8.51e-01 -0.0193 0.103 0.214 CD8_Naive L2
ENSG00000152894 PTPRK -514788 sc-eQTL 9.96e-01 -0.000341 0.0754 0.214 CD8_Naive L2
ENSG00000172673 THEMIS 87255 sc-eQTL 2.12e-01 -0.0798 0.0638 0.214 CD8_Naive L2
ENSG00000227945 AL590006.1 -22000 sc-eQTL 6.02e-02 -0.183 0.0969 0.214 CD8_Naive L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 7.52e-01 -0.0314 0.0991 0.215 CD8_TCM L2
ENSG00000118518 RNF146 739276 sc-eQTL 9.75e-01 -0.00365 0.115 0.215 CD8_TCM L2
ENSG00000152894 PTPRK -514788 sc-eQTL 9.95e-01 0.000636 0.0939 0.215 CD8_TCM L2
ENSG00000172673 THEMIS 87255 sc-eQTL 3.05e-01 0.103 0.1 0.215 CD8_TCM L2
ENSG00000227945 AL590006.1 -22000 sc-eQTL 8.11e-01 0.022 0.0919 0.215 CD8_TCM L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 3.88e-01 -0.0935 0.108 0.217 CD8_TEM L2
ENSG00000118518 RNF146 739276 sc-eQTL 1.35e-01 0.165 0.11 0.217 CD8_TEM L2
ENSG00000152894 PTPRK -514788 sc-eQTL 1.90e-01 0.114 0.0864 0.217 CD8_TEM L2
ENSG00000172673 THEMIS 87255 sc-eQTL 3.03e-01 -0.101 0.0977 0.217 CD8_TEM L2
ENSG00000227945 AL590006.1 -22000 sc-eQTL 8.50e-01 0.0159 0.084 0.217 CD8_TEM L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 9.22e-02 0.166 0.0983 0.212 MAIT L2
ENSG00000118518 RNF146 739276 sc-eQTL 9.34e-01 -0.00863 0.105 0.212 MAIT L2
ENSG00000172673 THEMIS 87255 sc-eQTL 2.61e-01 -0.0939 0.0833 0.212 MAIT L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 3.43e-01 -0.101 0.106 0.213 NK_CD56bright L2
ENSG00000118518 RNF146 739276 sc-eQTL 6.96e-01 -0.0435 0.111 0.213 NK_CD56bright L2
ENSG00000172673 THEMIS 87255 sc-eQTL 6.43e-01 0.0374 0.0807 0.213 NK_CD56bright L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 7.06e-01 -0.0322 0.0851 0.213 NK_CD56dim L2
ENSG00000118518 RNF146 739276 sc-eQTL 5.72e-01 -0.0552 0.0975 0.213 NK_CD56dim L2
ENSG00000172673 THEMIS 87255 sc-eQTL 1.16e-01 0.152 0.0961 0.213 NK_CD56dim L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 7.42e-01 -0.0362 0.11 0.21 NK_HLA L2
ENSG00000118518 RNF146 739276 sc-eQTL 2.13e-01 0.141 0.113 0.21 NK_HLA L2
ENSG00000172673 THEMIS 87255 sc-eQTL 2.81e-01 0.0954 0.0883 0.21 NK_HLA L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 7.39e-01 -0.0315 0.0941 0.213 NK_cytokine L2
ENSG00000118518 RNF146 739276 sc-eQTL 6.07e-01 -0.05 0.0971 0.213 NK_cytokine L2
ENSG00000172673 THEMIS 87255 sc-eQTL 9.55e-02 0.153 0.0913 0.213 NK_cytokine L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 6.31e-01 -0.0571 0.119 0.189 PB L2
ENSG00000118518 RNF146 739276 sc-eQTL 7.68e-01 0.047 0.159 0.189 PB L2
ENSG00000152894 PTPRK -514788 sc-eQTL 1.36e-01 0.164 0.109 0.189 PB L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 5.73e-01 -0.0482 0.0853 0.213 Pro_T L2
ENSG00000118518 RNF146 739276 sc-eQTL 1.33e-01 -0.157 0.104 0.213 Pro_T L2
ENSG00000172673 THEMIS 87255 sc-eQTL 9.68e-01 -0.00291 0.0725 0.213 Pro_T L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 6.36e-01 0.0469 0.099 0.214 Treg L2
ENSG00000118518 RNF146 739276 sc-eQTL 4.91e-01 0.0741 0.107 0.214 Treg L2
ENSG00000172673 THEMIS 87255 sc-eQTL 5.09e-01 -0.0697 0.105 0.214 Treg L2
ENSG00000214338 SOGA3 486695 sc-eQTL 1.58e-01 0.126 0.0892 0.214 Treg L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 4.85e-01 -0.0716 0.102 0.222 cDC L2
ENSG00000118518 RNF146 739276 sc-eQTL 2.19e-01 -0.139 0.113 0.222 cDC L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 2.47e-01 0.0803 0.0692 0.214 cMono_IL1B L2
ENSG00000118518 RNF146 739276 sc-eQTL 4.00e-01 0.0691 0.0819 0.214 cMono_IL1B L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 6.52e-01 0.0371 0.082 0.214 cMono_S100A L2
ENSG00000118518 RNF146 739276 sc-eQTL 5.32e-01 -0.0557 0.0889 0.214 cMono_S100A L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 9.29e-01 0.0101 0.113 0.224 gdT L2
ENSG00000118518 RNF146 739276 sc-eQTL 3.30e-01 0.112 0.114 0.224 gdT L2
ENSG00000172673 THEMIS 87255 sc-eQTL 7.80e-01 -0.0303 0.108 0.224 gdT L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 9.26e-02 0.159 0.094 0.211 intMono L2
ENSG00000118518 RNF146 739276 sc-eQTL 3.89e-02 -0.206 0.0989 0.211 intMono L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 9.25e-01 -0.009 0.0959 0.222 ncMono L2
ENSG00000118518 RNF146 739276 sc-eQTL 7.65e-01 0.0277 0.0924 0.222 ncMono L2
ENSG00000093144 ECHDC1 662277 sc-eQTL 8.93e-02 -0.167 0.0977 0.212 pDC L2
ENSG00000118518 RNF146 739276 sc-eQTL 1.90e-01 0.164 0.125 0.212 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 662277 sc-eQTL 9.69e-01 0.00269 0.0697 0.214 B_Memory LOneK1K
ENSG00000118518 RNF146 739276 sc-eQTL 9.18e-01 0.0104 0.1 0.214 B_Memory LOneK1K
ENSG00000152894 PTPRK -514788 sc-eQTL 1.24e-01 0.139 0.0903 0.214 B_Memory LOneK1K
ENSG00000093144 ECHDC1 662277 sc-eQTL 1.31e-01 -0.0843 0.0556 0.214 B_Naive LOneK1K
ENSG00000118518 RNF146 739276 sc-eQTL 8.64e-01 -0.0164 0.0958 0.214 B_Naive LOneK1K
ENSG00000152894 PTPRK -514788 sc-eQTL 8.01e-01 0.0177 0.0701 0.214 B_Naive LOneK1K
ENSG00000093144 ECHDC1 662277 sc-eQTL 2.07e-01 0.0804 0.0634 0.214 CD14_Mono LOneK1K
ENSG00000118518 RNF146 739276 sc-eQTL 9.66e-01 0.00327 0.0759 0.214 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 662277 sc-eQTL 4.75e-01 0.062 0.0866 0.213 CD16_Mono LOneK1K
ENSG00000118518 RNF146 739276 sc-eQTL 3.03e-01 -0.0834 0.0808 0.213 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 662277 sc-eQTL 6.57e-01 -0.0355 0.0796 0.213 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 739276 sc-eQTL 8.91e-01 -0.0124 0.0906 0.213 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS 87255 sc-eQTL 9.43e-02 0.163 0.0968 0.213 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000093144 \N 662277 3.14e-07 1.59e-07 6.55e-08 2.24e-07 1.07e-07 8.85e-08 2.24e-07 5.84e-08 1.71e-07 1.03e-07 1.66e-07 1.31e-07 2.29e-07 8.15e-08 5.97e-08 8.71e-08 5.42e-08 1.91e-07 7.29e-08 6.03e-08 1.23e-07 1.7e-07 1.69e-07 4.07e-08 2.17e-07 1.43e-07 1.29e-07 1.17e-07 1.37e-07 1.38e-07 1.21e-07 4.71e-08 4.23e-08 9.52e-08 5.24e-08 3.05e-08 4.54e-08 6.32e-08 6.21e-08 5.96e-08 6e-08 1.59e-07 3.02e-08 7.23e-09 3.61e-08 6.98e-09 7.66e-08 0.0 4.55e-08