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Genes within 1Mb (chr6:127984743:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 641134 sc-eQTL 9.86e-01 0.000761 0.0418 0.457 B L1
ENSG00000118518 RNF146 718133 sc-eQTL 9.61e-01 0.00328 0.0666 0.457 B L1
ENSG00000152894 PTPRK -535931 sc-eQTL 9.76e-02 0.0836 0.0502 0.457 B L1
ENSG00000093144 ECHDC1 641134 sc-eQTL 2.73e-01 -0.0559 0.0509 0.457 CD4T L1
ENSG00000118518 RNF146 718133 sc-eQTL 5.50e-01 0.0417 0.0696 0.457 CD4T L1
ENSG00000172673 THEMIS 66112 sc-eQTL 6.28e-01 0.0258 0.0532 0.457 CD4T L1
ENSG00000214338 SOGA3 465552 sc-eQTL 3.89e-01 -0.039 0.0452 0.457 CD4T L1
ENSG00000093144 ECHDC1 641134 sc-eQTL 4.53e-02 -0.123 0.0613 0.457 CD8T L1
ENSG00000118518 RNF146 718133 sc-eQTL 5.51e-01 0.0475 0.0794 0.457 CD8T L1
ENSG00000152894 PTPRK -535931 sc-eQTL 2.66e-03 -0.128 0.0422 0.457 CD8T L1
ENSG00000172673 THEMIS 66112 sc-eQTL 8.52e-03 -0.161 0.0607 0.457 CD8T L1
ENSG00000227945 AL590006.1 -43143 sc-eQTL 3.26e-01 -0.0606 0.0616 0.457 CD8T L1
ENSG00000093144 ECHDC1 641134 sc-eQTL 7.90e-01 -0.0185 0.0696 0.455 DC L1
ENSG00000118518 RNF146 718133 sc-eQTL 9.29e-01 -0.00758 0.085 0.455 DC L1
ENSG00000093144 ECHDC1 641134 sc-eQTL 6.02e-01 -0.0264 0.0507 0.457 Mono L1
ENSG00000118518 RNF146 718133 sc-eQTL 6.25e-01 0.0276 0.0563 0.457 Mono L1
ENSG00000093144 ECHDC1 641134 sc-eQTL 5.67e-01 -0.0351 0.0612 0.457 NK L1
ENSG00000118518 RNF146 718133 sc-eQTL 6.43e-01 0.0328 0.0707 0.457 NK L1
ENSG00000172673 THEMIS 66112 sc-eQTL 3.28e-01 0.0783 0.0799 0.457 NK L1
ENSG00000093144 ECHDC1 641134 sc-eQTL 9.64e-01 -0.00254 0.056 0.457 Other_T L1
ENSG00000118518 RNF146 718133 sc-eQTL 4.83e-01 -0.0565 0.0804 0.457 Other_T L1
ENSG00000172673 THEMIS 66112 sc-eQTL 6.27e-02 0.109 0.058 0.457 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 641134 sc-eQTL 9.47e-01 0.00637 0.0956 0.459 B_Activated L2
ENSG00000118518 RNF146 718133 sc-eQTL 7.88e-01 0.0261 0.097 0.459 B_Activated L2
ENSG00000152894 PTPRK -535931 sc-eQTL 6.52e-01 -0.04 0.0887 0.459 B_Activated L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 9.91e-01 0.000732 0.0665 0.459 B_Intermediate L2
ENSG00000118518 RNF146 718133 sc-eQTL 1.05e-01 0.138 0.0849 0.459 B_Intermediate L2
ENSG00000152894 PTPRK -535931 sc-eQTL 2.91e-01 0.088 0.0832 0.459 B_Intermediate L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 3.41e-01 -0.0708 0.0742 0.453 B_Memory L2
ENSG00000118518 RNF146 718133 sc-eQTL 5.50e-01 -0.0517 0.0864 0.453 B_Memory L2
ENSG00000152894 PTPRK -535931 sc-eQTL 4.44e-01 0.0615 0.0802 0.453 B_Memory L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 4.45e-01 0.0384 0.0501 0.457 B_Naive1 L2
ENSG00000118518 RNF146 718133 sc-eQTL 5.97e-01 -0.0418 0.0789 0.457 B_Naive1 L2
ENSG00000152894 PTPRK -535931 sc-eQTL 1.77e-01 0.086 0.0635 0.457 B_Naive1 L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 3.45e-01 -0.0606 0.064 0.455 B_Naive2 L2
ENSG00000118518 RNF146 718133 sc-eQTL 3.68e-01 0.0801 0.0888 0.455 B_Naive2 L2
ENSG00000152894 PTPRK -535931 sc-eQTL 5.95e-01 0.0377 0.0708 0.455 B_Naive2 L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 7.20e-01 -0.0322 0.0897 0.455 CD4_CTL L2
ENSG00000118518 RNF146 718133 sc-eQTL 7.74e-01 -0.0253 0.0879 0.455 CD4_CTL L2
ENSG00000172673 THEMIS 66112 sc-eQTL 4.36e-01 -0.0462 0.0592 0.455 CD4_CTL L2
ENSG00000214338 SOGA3 465552 sc-eQTL 7.10e-01 -0.0296 0.0792 0.455 CD4_CTL L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 9.92e-01 0.000633 0.0623 0.457 CD4_Naive L2
ENSG00000118518 RNF146 718133 sc-eQTL 9.63e-01 -0.00345 0.0745 0.457 CD4_Naive L2
ENSG00000172673 THEMIS 66112 sc-eQTL 4.60e-01 0.0395 0.0534 0.457 CD4_Naive L2
ENSG00000214338 SOGA3 465552 sc-eQTL 3.99e-01 -0.0429 0.0508 0.457 CD4_Naive L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 2.19e-01 -0.0787 0.0638 0.457 CD4_TCM L2
ENSG00000118518 RNF146 718133 sc-eQTL 6.66e-01 0.0358 0.0829 0.457 CD4_TCM L2
ENSG00000172673 THEMIS 66112 sc-eQTL 1.67e-01 0.0844 0.0609 0.457 CD4_TCM L2
ENSG00000214338 SOGA3 465552 sc-eQTL 4.52e-01 0.0473 0.0628 0.457 CD4_TCM L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 3.23e-01 -0.0747 0.0753 0.457 CD4_TEM L2
ENSG00000118518 RNF146 718133 sc-eQTL 4.91e-01 0.0591 0.0857 0.457 CD4_TEM L2
ENSG00000172673 THEMIS 66112 sc-eQTL 7.85e-01 0.0188 0.0687 0.457 CD4_TEM L2
ENSG00000214338 SOGA3 465552 sc-eQTL 1.64e-02 -0.169 0.07 0.457 CD4_TEM L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 3.74e-01 -0.0691 0.0776 0.457 CD8_CTL L2
ENSG00000118518 RNF146 718133 sc-eQTL 8.26e-01 0.0202 0.0921 0.457 CD8_CTL L2
ENSG00000152894 PTPRK -535931 sc-eQTL 3.87e-01 0.0673 0.0776 0.457 CD8_CTL L2
ENSG00000172673 THEMIS 66112 sc-eQTL 5.23e-02 -0.129 0.0659 0.457 CD8_CTL L2
ENSG00000227945 AL590006.1 -43143 sc-eQTL 5.13e-01 0.0432 0.066 0.457 CD8_CTL L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 3.97e-02 -0.158 0.0763 0.457 CD8_Naive L2
ENSG00000118518 RNF146 718133 sc-eQTL 7.01e-01 -0.0317 0.0825 0.457 CD8_Naive L2
ENSG00000152894 PTPRK -535931 sc-eQTL 3.88e-03 -0.174 0.0594 0.457 CD8_Naive L2
ENSG00000172673 THEMIS 66112 sc-eQTL 3.53e-01 -0.0478 0.0513 0.457 CD8_Naive L2
ENSG00000227945 AL590006.1 -43143 sc-eQTL 3.17e-01 -0.0786 0.0783 0.457 CD8_Naive L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 8.70e-01 -0.0133 0.0813 0.451 CD8_TCM L2
ENSG00000118518 RNF146 718133 sc-eQTL 6.35e-01 0.0449 0.0943 0.451 CD8_TCM L2
ENSG00000152894 PTPRK -535931 sc-eQTL 7.69e-01 0.0227 0.077 0.451 CD8_TCM L2
ENSG00000172673 THEMIS 66112 sc-eQTL 1.68e-01 0.113 0.0818 0.451 CD8_TCM L2
ENSG00000227945 AL590006.1 -43143 sc-eQTL 4.45e-01 0.0577 0.0753 0.451 CD8_TCM L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 8.95e-01 -0.0115 0.0877 0.466 CD8_TEM L2
ENSG00000118518 RNF146 718133 sc-eQTL 2.50e-01 0.103 0.0891 0.466 CD8_TEM L2
ENSG00000152894 PTPRK -535931 sc-eQTL 6.29e-01 0.034 0.0703 0.466 CD8_TEM L2
ENSG00000172673 THEMIS 66112 sc-eQTL 5.92e-02 -0.149 0.0787 0.466 CD8_TEM L2
ENSG00000227945 AL590006.1 -43143 sc-eQTL 4.75e-01 -0.0487 0.068 0.466 CD8_TEM L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 1.74e-01 0.111 0.0817 0.459 MAIT L2
ENSG00000118518 RNF146 718133 sc-eQTL 8.84e-01 -0.0127 0.087 0.459 MAIT L2
ENSG00000172673 THEMIS 66112 sc-eQTL 8.90e-01 0.00964 0.0693 0.459 MAIT L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 1.68e-01 -0.118 0.0852 0.456 NK_CD56bright L2
ENSG00000118518 RNF146 718133 sc-eQTL 9.49e-01 -0.00576 0.0896 0.456 NK_CD56bright L2
ENSG00000172673 THEMIS 66112 sc-eQTL 4.06e-01 0.0541 0.065 0.456 NK_CD56bright L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 6.57e-01 -0.0307 0.0691 0.457 NK_CD56dim L2
ENSG00000118518 RNF146 718133 sc-eQTL 9.33e-01 0.00665 0.0793 0.457 NK_CD56dim L2
ENSG00000172673 THEMIS 66112 sc-eQTL 6.19e-01 0.0391 0.0785 0.457 NK_CD56dim L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 7.95e-01 0.0233 0.0893 0.45 NK_HLA L2
ENSG00000118518 RNF146 718133 sc-eQTL 4.53e-01 0.0691 0.092 0.45 NK_HLA L2
ENSG00000172673 THEMIS 66112 sc-eQTL 1.86e-01 0.0948 0.0715 0.45 NK_HLA L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 8.72e-01 0.0121 0.0752 0.457 NK_cytokine L2
ENSG00000118518 RNF146 718133 sc-eQTL 3.71e-01 0.0695 0.0774 0.457 NK_cytokine L2
ENSG00000172673 THEMIS 66112 sc-eQTL 6.28e-01 0.0356 0.0733 0.457 NK_cytokine L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 8.00e-01 -0.0237 0.0933 0.422 PB L2
ENSG00000118518 RNF146 718133 sc-eQTL 8.60e-01 0.0221 0.125 0.422 PB L2
ENSG00000152894 PTPRK -535931 sc-eQTL 9.44e-01 -0.00609 0.0865 0.422 PB L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 9.90e-01 0.00083 0.0682 0.457 Pro_T L2
ENSG00000118518 RNF146 718133 sc-eQTL 3.65e-01 -0.0756 0.0833 0.457 Pro_T L2
ENSG00000172673 THEMIS 66112 sc-eQTL 1.43e-01 0.0847 0.0577 0.457 Pro_T L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 3.42e-01 -0.0778 0.0817 0.457 Treg L2
ENSG00000118518 RNF146 718133 sc-eQTL 3.34e-01 0.0858 0.0887 0.457 Treg L2
ENSG00000172673 THEMIS 66112 sc-eQTL 4.33e-01 0.0684 0.0871 0.457 Treg L2
ENSG00000214338 SOGA3 465552 sc-eQTL 9.86e-01 0.00129 0.0741 0.457 Treg L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 9.43e-01 -0.00611 0.0848 0.466 cDC L2
ENSG00000118518 RNF146 718133 sc-eQTL 7.86e-01 0.0254 0.0936 0.466 cDC L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 8.67e-01 -0.00956 0.0569 0.457 cMono_IL1B L2
ENSG00000118518 RNF146 718133 sc-eQTL 1.08e-01 0.108 0.0669 0.457 cMono_IL1B L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 9.25e-01 -0.00636 0.0671 0.457 cMono_S100A L2
ENSG00000118518 RNF146 718133 sc-eQTL 8.11e-01 -0.0174 0.0727 0.457 cMono_S100A L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 2.23e-01 0.115 0.094 0.458 gdT L2
ENSG00000118518 RNF146 718133 sc-eQTL 1.65e-02 0.227 0.0937 0.458 gdT L2
ENSG00000172673 THEMIS 66112 sc-eQTL 9.43e-02 0.15 0.0893 0.458 gdT L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 8.90e-01 -0.0107 0.0771 0.456 intMono L2
ENSG00000118518 RNF146 718133 sc-eQTL 8.58e-01 -0.0146 0.0813 0.456 intMono L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 9.01e-01 0.00989 0.0793 0.466 ncMono L2
ENSG00000118518 RNF146 718133 sc-eQTL 3.27e-01 0.0749 0.0763 0.466 ncMono L2
ENSG00000093144 ECHDC1 641134 sc-eQTL 2.06e-01 -0.102 0.0804 0.46 pDC L2
ENSG00000118518 RNF146 718133 sc-eQTL 6.96e-01 0.0401 0.103 0.46 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 641134 sc-eQTL 3.31e-01 -0.0556 0.0571 0.457 B_Memory LOneK1K
ENSG00000118518 RNF146 718133 sc-eQTL 2.86e-01 0.0877 0.0819 0.457 B_Memory LOneK1K
ENSG00000152894 PTPRK -535931 sc-eQTL 1.20e-01 0.116 0.0741 0.457 B_Memory LOneK1K
ENSG00000093144 ECHDC1 641134 sc-eQTL 9.47e-01 0.00303 0.0456 0.457 B_Naive LOneK1K
ENSG00000118518 RNF146 718133 sc-eQTL 8.78e-01 0.012 0.0782 0.457 B_Naive LOneK1K
ENSG00000152894 PTPRK -535931 sc-eQTL 2.00e-01 0.0734 0.057 0.457 B_Naive LOneK1K
ENSG00000093144 ECHDC1 641134 sc-eQTL 6.16e-01 -0.026 0.0518 0.457 CD14_Mono LOneK1K
ENSG00000118518 RNF146 718133 sc-eQTL 5.84e-01 0.0338 0.0617 0.457 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 641134 sc-eQTL 9.93e-01 -0.000642 0.0717 0.459 CD16_Mono LOneK1K
ENSG00000118518 RNF146 718133 sc-eQTL 3.60e-01 0.0614 0.0668 0.459 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 641134 sc-eQTL 7.74e-01 -0.0186 0.0646 0.457 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 718133 sc-eQTL 6.22e-01 0.0363 0.0734 0.457 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS 66112 sc-eQTL 2.64e-01 0.0882 0.0788 0.457 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 641134 eQTL 0.0248 -0.0378 0.0168 0.0 0.0 0.475

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina