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Genes within 1Mb (chr6:127701595:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 357986 sc-eQTL 8.48e-01 -0.0139 0.0723 0.1 B L1
ENSG00000118518 RNF146 434985 sc-eQTL 8.24e-01 0.0256 0.115 0.1 B L1
ENSG00000152894 PTPRK -819079 sc-eQTL 2.92e-02 0.19 0.0864 0.1 B L1
ENSG00000093144 ECHDC1 357986 sc-eQTL 1.82e-01 0.12 0.0898 0.1 CD4T L1
ENSG00000118518 RNF146 434985 sc-eQTL 2.78e-01 0.133 0.123 0.1 CD4T L1
ENSG00000172673 THEMIS -217036 sc-eQTL 1.32e-01 0.141 0.0934 0.1 CD4T L1
ENSG00000214338 SOGA3 182404 sc-eQTL 4.03e-01 0.0669 0.0797 0.1 CD4T L1
ENSG00000093144 ECHDC1 357986 sc-eQTL 1.67e-01 -0.148 0.107 0.1 CD8T L1
ENSG00000118518 RNF146 434985 sc-eQTL 9.38e-01 0.0107 0.138 0.1 CD8T L1
ENSG00000152894 PTPRK -819079 sc-eQTL 7.33e-01 0.0256 0.0749 0.1 CD8T L1
ENSG00000172673 THEMIS -217036 sc-eQTL 1.39e-01 0.159 0.107 0.1 CD8T L1
ENSG00000227945 AL590006.1 -326291 sc-eQTL 5.53e-01 -0.0637 0.107 0.1 CD8T L1
ENSG00000093144 ECHDC1 357986 sc-eQTL 6.17e-01 -0.0603 0.121 0.099 DC L1
ENSG00000118518 RNF146 434985 sc-eQTL 1.87e-03 0.453 0.144 0.099 DC L1
ENSG00000093144 ECHDC1 357986 sc-eQTL 8.10e-01 -0.0208 0.0864 0.1 Mono L1
ENSG00000118518 RNF146 434985 sc-eQTL 5.98e-01 0.0506 0.0959 0.1 Mono L1
ENSG00000093144 ECHDC1 357986 sc-eQTL 1.50e-01 0.153 0.106 0.101 NK L1
ENSG00000118518 RNF146 434985 sc-eQTL 1.15e-01 0.193 0.122 0.101 NK L1
ENSG00000172673 THEMIS -217036 sc-eQTL 4.06e-01 0.116 0.139 0.101 NK L1
ENSG00000093144 ECHDC1 357986 sc-eQTL 4.76e-01 -0.0693 0.0971 0.1 Other_T L1
ENSG00000118518 RNF146 434985 sc-eQTL 8.49e-01 0.0266 0.14 0.1 Other_T L1
ENSG00000172673 THEMIS -217036 sc-eQTL 7.66e-01 0.0302 0.102 0.1 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 357986 sc-eQTL 8.02e-01 -0.0402 0.16 0.11 B_Activated L2
ENSG00000118518 RNF146 434985 sc-eQTL 9.00e-01 -0.0205 0.163 0.11 B_Activated L2
ENSG00000152894 PTPRK -819079 sc-eQTL 1.37e-01 0.221 0.148 0.11 B_Activated L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 7.83e-01 -0.0311 0.113 0.101 B_Intermediate L2
ENSG00000118518 RNF146 434985 sc-eQTL 1.26e-01 -0.222 0.144 0.101 B_Intermediate L2
ENSG00000152894 PTPRK -819079 sc-eQTL 8.42e-01 0.0283 0.142 0.101 B_Intermediate L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 8.00e-01 0.0332 0.131 0.101 B_Memory L2
ENSG00000118518 RNF146 434985 sc-eQTL 6.25e-02 0.282 0.151 0.101 B_Memory L2
ENSG00000152894 PTPRK -819079 sc-eQTL 8.47e-01 -0.0272 0.141 0.101 B_Memory L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 7.52e-01 -0.0274 0.0865 0.1 B_Naive1 L2
ENSG00000118518 RNF146 434985 sc-eQTL 3.30e-01 0.133 0.136 0.1 B_Naive1 L2
ENSG00000152894 PTPRK -819079 sc-eQTL 6.16e-01 0.0552 0.11 0.1 B_Naive1 L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 4.92e-01 -0.0751 0.109 0.101 B_Naive2 L2
ENSG00000118518 RNF146 434985 sc-eQTL 6.09e-01 0.0776 0.151 0.101 B_Naive2 L2
ENSG00000152894 PTPRK -819079 sc-eQTL 1.08e-02 0.306 0.119 0.101 B_Naive2 L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 6.04e-01 -0.0838 0.161 0.095 CD4_CTL L2
ENSG00000118518 RNF146 434985 sc-eQTL 2.57e-01 -0.179 0.158 0.095 CD4_CTL L2
ENSG00000172673 THEMIS -217036 sc-eQTL 7.75e-01 0.0305 0.107 0.095 CD4_CTL L2
ENSG00000214338 SOGA3 182404 sc-eQTL 9.86e-01 -0.00242 0.142 0.095 CD4_CTL L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 4.51e-01 0.0837 0.111 0.1 CD4_Naive L2
ENSG00000118518 RNF146 434985 sc-eQTL 7.49e-01 0.0425 0.133 0.1 CD4_Naive L2
ENSG00000172673 THEMIS -217036 sc-eQTL 4.08e-01 0.0789 0.0951 0.1 CD4_Naive L2
ENSG00000214338 SOGA3 182404 sc-eQTL 8.20e-01 0.0206 0.0907 0.1 CD4_Naive L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 2.06e-01 0.142 0.112 0.1 CD4_TCM L2
ENSG00000118518 RNF146 434985 sc-eQTL 2.12e-03 0.443 0.142 0.1 CD4_TCM L2
ENSG00000172673 THEMIS -217036 sc-eQTL 3.06e-03 0.315 0.105 0.1 CD4_TCM L2
ENSG00000214338 SOGA3 182404 sc-eQTL 1.74e-01 0.15 0.11 0.1 CD4_TCM L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 7.62e-01 0.0404 0.133 0.1 CD4_TEM L2
ENSG00000118518 RNF146 434985 sc-eQTL 2.44e-01 0.176 0.151 0.1 CD4_TEM L2
ENSG00000172673 THEMIS -217036 sc-eQTL 1.55e-01 0.172 0.12 0.1 CD4_TEM L2
ENSG00000214338 SOGA3 182404 sc-eQTL 2.14e-01 0.155 0.125 0.1 CD4_TEM L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 6.39e-02 -0.244 0.131 0.1 CD8_CTL L2
ENSG00000118518 RNF146 434985 sc-eQTL 6.29e-01 0.0757 0.157 0.1 CD8_CTL L2
ENSG00000152894 PTPRK -819079 sc-eQTL 1.24e-01 0.203 0.131 0.1 CD8_CTL L2
ENSG00000172673 THEMIS -217036 sc-eQTL 7.28e-01 0.0393 0.113 0.1 CD8_CTL L2
ENSG00000227945 AL590006.1 -326291 sc-eQTL 9.18e-01 0.0116 0.112 0.1 CD8_CTL L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 5.56e-01 -0.0822 0.139 0.1 CD8_Naive L2
ENSG00000118518 RNF146 434985 sc-eQTL 9.20e-01 0.015 0.149 0.1 CD8_Naive L2
ENSG00000152894 PTPRK -819079 sc-eQTL 5.93e-01 -0.0587 0.11 0.1 CD8_Naive L2
ENSG00000172673 THEMIS -217036 sc-eQTL 1.57e-01 0.132 0.0927 0.1 CD8_Naive L2
ENSG00000227945 AL590006.1 -326291 sc-eQTL 1.38e-01 -0.21 0.141 0.1 CD8_Naive L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 8.80e-01 -0.0214 0.142 0.104 CD8_TCM L2
ENSG00000118518 RNF146 434985 sc-eQTL 6.99e-01 -0.0636 0.165 0.104 CD8_TCM L2
ENSG00000152894 PTPRK -819079 sc-eQTL 5.39e-01 -0.0827 0.134 0.104 CD8_TCM L2
ENSG00000172673 THEMIS -217036 sc-eQTL 2.32e-01 0.172 0.143 0.104 CD8_TCM L2
ENSG00000227945 AL590006.1 -326291 sc-eQTL 5.37e-01 0.0813 0.132 0.104 CD8_TCM L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 8.57e-01 -0.027 0.15 0.096 CD8_TEM L2
ENSG00000118518 RNF146 434985 sc-eQTL 6.08e-01 0.0786 0.153 0.096 CD8_TEM L2
ENSG00000152894 PTPRK -819079 sc-eQTL 1.10e-01 0.192 0.12 0.096 CD8_TEM L2
ENSG00000172673 THEMIS -217036 sc-eQTL 7.26e-01 0.0477 0.136 0.096 CD8_TEM L2
ENSG00000227945 AL590006.1 -326291 sc-eQTL 5.00e-01 -0.0789 0.117 0.096 CD8_TEM L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 7.45e-01 -0.0462 0.142 0.1 MAIT L2
ENSG00000118518 RNF146 434985 sc-eQTL 7.78e-01 0.0425 0.151 0.1 MAIT L2
ENSG00000172673 THEMIS -217036 sc-eQTL 4.96e-01 0.0817 0.12 0.1 MAIT L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 3.59e-01 -0.135 0.147 0.1 NK_CD56bright L2
ENSG00000118518 RNF146 434985 sc-eQTL 2.23e-01 -0.188 0.154 0.1 NK_CD56bright L2
ENSG00000172673 THEMIS -217036 sc-eQTL 5.24e-02 0.217 0.111 0.1 NK_CD56bright L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 4.01e-01 0.0998 0.118 0.101 NK_CD56dim L2
ENSG00000118518 RNF146 434985 sc-eQTL 9.00e-01 0.0172 0.136 0.101 NK_CD56dim L2
ENSG00000172673 THEMIS -217036 sc-eQTL 9.90e-01 -0.00176 0.135 0.101 NK_CD56dim L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 1.26e-01 0.235 0.153 0.105 NK_HLA L2
ENSG00000118518 RNF146 434985 sc-eQTL 2.64e-01 0.178 0.158 0.105 NK_HLA L2
ENSG00000172673 THEMIS -217036 sc-eQTL 3.31e-01 -0.12 0.124 0.105 NK_HLA L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 5.08e-01 0.0869 0.131 0.101 NK_cytokine L2
ENSG00000118518 RNF146 434985 sc-eQTL 2.22e-02 0.308 0.134 0.101 NK_cytokine L2
ENSG00000172673 THEMIS -217036 sc-eQTL 5.06e-01 0.0851 0.128 0.101 NK_cytokine L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 6.31e-01 -0.0752 0.156 0.081 PB L2
ENSG00000118518 RNF146 434985 sc-eQTL 9.61e-01 -0.0102 0.209 0.081 PB L2
ENSG00000152894 PTPRK -819079 sc-eQTL 6.58e-01 -0.0643 0.145 0.081 PB L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 9.24e-01 0.0111 0.117 0.102 Pro_T L2
ENSG00000118518 RNF146 434985 sc-eQTL 7.01e-01 0.0549 0.143 0.102 Pro_T L2
ENSG00000172673 THEMIS -217036 sc-eQTL 3.36e-01 -0.0954 0.0989 0.102 Pro_T L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 5.07e-01 0.0938 0.141 0.1 Treg L2
ENSG00000118518 RNF146 434985 sc-eQTL 5.07e-01 0.102 0.153 0.1 Treg L2
ENSG00000172673 THEMIS -217036 sc-eQTL 5.79e-01 0.0836 0.15 0.1 Treg L2
ENSG00000214338 SOGA3 182404 sc-eQTL 5.32e-01 -0.0799 0.128 0.1 Treg L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 7.87e-01 -0.0401 0.148 0.1 cDC L2
ENSG00000118518 RNF146 434985 sc-eQTL 3.39e-06 0.738 0.154 0.1 cDC L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 9.05e-01 0.0116 0.0972 0.1 cMono_IL1B L2
ENSG00000118518 RNF146 434985 sc-eQTL 8.73e-01 -0.0184 0.115 0.1 cMono_IL1B L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 3.12e-01 -0.116 0.115 0.1 cMono_S100A L2
ENSG00000118518 RNF146 434985 sc-eQTL 2.41e-01 0.146 0.124 0.1 cMono_S100A L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 7.21e-01 -0.0593 0.166 0.106 gdT L2
ENSG00000118518 RNF146 434985 sc-eQTL 3.68e-01 0.151 0.167 0.106 gdT L2
ENSG00000172673 THEMIS -217036 sc-eQTL 9.63e-02 0.262 0.157 0.106 gdT L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 7.63e-01 -0.0398 0.131 0.1 intMono L2
ENSG00000118518 RNF146 434985 sc-eQTL 9.60e-01 -0.00698 0.139 0.1 intMono L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 5.31e-01 0.0842 0.134 0.102 ncMono L2
ENSG00000118518 RNF146 434985 sc-eQTL 4.33e-01 0.102 0.129 0.102 ncMono L2
ENSG00000093144 ECHDC1 357986 sc-eQTL 6.42e-01 -0.0641 0.138 0.096 pDC L2
ENSG00000118518 RNF146 434985 sc-eQTL 7.94e-01 0.0456 0.175 0.096 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 357986 sc-eQTL 9.17e-01 0.0103 0.0983 0.1 B_Memory LOneK1K
ENSG00000118518 RNF146 434985 sc-eQTL 8.43e-01 0.028 0.141 0.1 B_Memory LOneK1K
ENSG00000152894 PTPRK -819079 sc-eQTL 3.45e-01 0.121 0.128 0.1 B_Memory LOneK1K
ENSG00000093144 ECHDC1 357986 sc-eQTL 4.40e-01 -0.0605 0.0782 0.1 B_Naive LOneK1K
ENSG00000118518 RNF146 434985 sc-eQTL 1.66e-01 0.186 0.134 0.1 B_Naive LOneK1K
ENSG00000152894 PTPRK -819079 sc-eQTL 1.24e-01 0.151 0.0978 0.1 B_Naive LOneK1K
ENSG00000093144 ECHDC1 357986 sc-eQTL 7.81e-01 -0.0247 0.0885 0.1 CD14_Mono LOneK1K
ENSG00000118518 RNF146 434985 sc-eQTL 4.36e-01 0.0822 0.105 0.1 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 357986 sc-eQTL 6.63e-01 0.0539 0.123 0.099 CD16_Mono LOneK1K
ENSG00000118518 RNF146 434985 sc-eQTL 7.72e-01 0.0334 0.115 0.099 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 357986 sc-eQTL 2.41e-01 0.131 0.111 0.101 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 434985 sc-eQTL 6.51e-02 0.234 0.126 0.101 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -217036 sc-eQTL 3.79e-01 0.12 0.136 0.101 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000172673 THEMIS -217036 eQTL 0.00437 0.0661 0.0231 0.00254 0.00157 0.109

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000152894 \N -819079 2.76e-07 1.34e-07 5.35e-08 1.9e-07 9.8e-08 9.05e-08 1.6e-07 5.43e-08 1.45e-07 6.08e-08 1.52e-07 1.05e-07 1.53e-07 7.37e-08 6.25e-08 7.5e-08 4.24e-08 1.44e-07 6.32e-08 4.8e-08 1.25e-07 1.26e-07 1.44e-07 2.79e-08 1.55e-07 1.26e-07 1.18e-07 1.01e-07 1.23e-07 1e-07 1.02e-07 3.55e-08 3.43e-08 8.72e-08 3.46e-08 2.99e-08 5.61e-08 8.89e-08 6.71e-08 4.55e-08 5.8e-08 1.4e-07 5.12e-08 1.55e-08 3.41e-08 1.8e-08 1.11e-07 1.96e-09 4.8e-08