logo

Genes within 1Mb (chr6:127636922:C:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 293313 sc-eQTL 7.92e-01 -0.0197 0.0749 0.09 B L1
ENSG00000118518 RNF146 370312 sc-eQTL 6.77e-01 0.0497 0.119 0.09 B L1
ENSG00000152894 PTPRK -883752 sc-eQTL 1.16e-01 0.142 0.09 0.09 B L1
ENSG00000093144 ECHDC1 293313 sc-eQTL 1.37e-01 0.139 0.0934 0.09 CD4T L1
ENSG00000118518 RNF146 370312 sc-eQTL 7.28e-01 0.0445 0.128 0.09 CD4T L1
ENSG00000172673 THEMIS -281709 sc-eQTL 8.03e-02 0.171 0.0971 0.09 CD4T L1
ENSG00000214338 SOGA3 117731 sc-eQTL 8.43e-01 -0.0165 0.0832 0.09 CD4T L1
ENSG00000093144 ECHDC1 293313 sc-eQTL 4.00e-01 -0.0941 0.111 0.09 CD8T L1
ENSG00000118518 RNF146 370312 sc-eQTL 9.10e-01 -0.0162 0.143 0.09 CD8T L1
ENSG00000152894 PTPRK -883752 sc-eQTL 6.73e-01 0.0329 0.0778 0.09 CD8T L1
ENSG00000172673 THEMIS -281709 sc-eQTL 9.44e-02 0.186 0.111 0.09 CD8T L1
ENSG00000227945 AL590006.1 -390964 sc-eQTL 5.12e-01 -0.0731 0.111 0.09 CD8T L1
ENSG00000093144 ECHDC1 293313 sc-eQTL 3.24e-01 -0.123 0.124 0.09 DC L1
ENSG00000118518 RNF146 370312 sc-eQTL 4.12e-04 0.529 0.147 0.09 DC L1
ENSG00000093144 ECHDC1 293313 sc-eQTL 8.46e-01 -0.0173 0.089 0.09 Mono L1
ENSG00000118518 RNF146 370312 sc-eQTL 8.34e-01 0.0208 0.0989 0.09 Mono L1
ENSG00000093144 ECHDC1 293313 sc-eQTL 1.34e-01 0.165 0.11 0.09 NK L1
ENSG00000118518 RNF146 370312 sc-eQTL 1.71e-01 0.175 0.127 0.09 NK L1
ENSG00000172673 THEMIS -281709 sc-eQTL 5.73e-01 0.0817 0.145 0.09 NK L1
ENSG00000093144 ECHDC1 293313 sc-eQTL 5.56e-01 -0.0596 0.101 0.09 Other_T L1
ENSG00000118518 RNF146 370312 sc-eQTL 3.99e-01 -0.123 0.145 0.09 Other_T L1
ENSG00000172673 THEMIS -281709 sc-eQTL 9.57e-01 0.00574 0.106 0.09 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 293313 sc-eQTL 7.71e-01 -0.0478 0.164 0.099 B_Activated L2
ENSG00000118518 RNF146 370312 sc-eQTL 8.92e-01 0.0227 0.166 0.099 B_Activated L2
ENSG00000152894 PTPRK -883752 sc-eQTL 2.92e-01 0.16 0.152 0.099 B_Activated L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 8.02e-01 -0.0295 0.117 0.09 B_Intermediate L2
ENSG00000118518 RNF146 370312 sc-eQTL 4.38e-01 -0.117 0.151 0.09 B_Intermediate L2
ENSG00000152894 PTPRK -883752 sc-eQTL 8.24e-01 -0.0327 0.147 0.09 B_Intermediate L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 5.63e-01 0.0786 0.135 0.091 B_Memory L2
ENSG00000118518 RNF146 370312 sc-eQTL 5.06e-01 0.105 0.158 0.091 B_Memory L2
ENSG00000152894 PTPRK -883752 sc-eQTL 8.57e-01 -0.0265 0.146 0.091 B_Memory L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 3.46e-01 -0.0844 0.0893 0.09 B_Naive1 L2
ENSG00000118518 RNF146 370312 sc-eQTL 1.65e-01 0.195 0.14 0.09 B_Naive1 L2
ENSG00000152894 PTPRK -883752 sc-eQTL 8.33e-01 0.0239 0.114 0.09 B_Naive1 L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 5.92e-01 -0.0605 0.113 0.09 B_Naive2 L2
ENSG00000118518 RNF146 370312 sc-eQTL 9.43e-01 0.0111 0.156 0.09 B_Naive2 L2
ENSG00000152894 PTPRK -883752 sc-eQTL 1.75e-02 0.295 0.123 0.09 B_Naive2 L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 9.71e-01 -0.00622 0.168 0.084 CD4_CTL L2
ENSG00000118518 RNF146 370312 sc-eQTL 6.12e-02 -0.308 0.163 0.084 CD4_CTL L2
ENSG00000172673 THEMIS -281709 sc-eQTL 5.00e-01 0.0751 0.111 0.084 CD4_CTL L2
ENSG00000214338 SOGA3 117731 sc-eQTL 7.31e-01 -0.0511 0.149 0.084 CD4_CTL L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 4.19e-01 0.0936 0.116 0.09 CD4_Naive L2
ENSG00000118518 RNF146 370312 sc-eQTL 8.29e-01 0.0299 0.139 0.09 CD4_Naive L2
ENSG00000172673 THEMIS -281709 sc-eQTL 4.48e-01 0.0755 0.0994 0.09 CD4_Naive L2
ENSG00000214338 SOGA3 117731 sc-eQTL 4.60e-01 -0.0701 0.0946 0.09 CD4_Naive L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 8.25e-02 0.202 0.116 0.09 CD4_TCM L2
ENSG00000118518 RNF146 370312 sc-eQTL 3.11e-02 0.325 0.15 0.09 CD4_TCM L2
ENSG00000172673 THEMIS -281709 sc-eQTL 1.02e-03 0.362 0.109 0.09 CD4_TCM L2
ENSG00000214338 SOGA3 117731 sc-eQTL 3.27e-01 0.113 0.115 0.09 CD4_TCM L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 7.26e-01 -0.0484 0.138 0.09 CD4_TEM L2
ENSG00000118518 RNF146 370312 sc-eQTL 4.83e-01 0.11 0.157 0.09 CD4_TEM L2
ENSG00000172673 THEMIS -281709 sc-eQTL 4.87e-02 0.247 0.124 0.09 CD4_TEM L2
ENSG00000214338 SOGA3 117731 sc-eQTL 5.85e-01 0.0709 0.13 0.09 CD4_TEM L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 1.87e-01 -0.181 0.137 0.09 CD8_CTL L2
ENSG00000118518 RNF146 370312 sc-eQTL 7.03e-01 0.0621 0.163 0.09 CD8_CTL L2
ENSG00000152894 PTPRK -883752 sc-eQTL 1.52e-01 0.196 0.137 0.09 CD8_CTL L2
ENSG00000172673 THEMIS -281709 sc-eQTL 9.64e-01 -0.00536 0.117 0.09 CD8_CTL L2
ENSG00000227945 AL590006.1 -390964 sc-eQTL 5.64e-01 -0.0673 0.117 0.09 CD8_CTL L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 8.18e-01 -0.0335 0.146 0.09 CD8_Naive L2
ENSG00000118518 RNF146 370312 sc-eQTL 9.80e-01 -0.00384 0.156 0.09 CD8_Naive L2
ENSG00000152894 PTPRK -883752 sc-eQTL 4.88e-01 -0.0795 0.115 0.09 CD8_Naive L2
ENSG00000172673 THEMIS -281709 sc-eQTL 3.71e-01 0.087 0.0971 0.09 CD8_Naive L2
ENSG00000227945 AL590006.1 -390964 sc-eQTL 2.04e-01 -0.189 0.148 0.09 CD8_Naive L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 9.39e-01 0.0115 0.15 0.09 CD8_TCM L2
ENSG00000118518 RNF146 370312 sc-eQTL 4.93e-01 -0.119 0.173 0.09 CD8_TCM L2
ENSG00000152894 PTPRK -883752 sc-eQTL 7.81e-01 -0.0394 0.142 0.09 CD8_TCM L2
ENSG00000172673 THEMIS -281709 sc-eQTL 9.51e-02 0.252 0.15 0.09 CD8_TCM L2
ENSG00000227945 AL590006.1 -390964 sc-eQTL 4.74e-01 0.0994 0.139 0.09 CD8_TCM L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 8.33e-01 -0.0331 0.157 0.084 CD8_TEM L2
ENSG00000118518 RNF146 370312 sc-eQTL 4.90e-01 0.111 0.16 0.084 CD8_TEM L2
ENSG00000152894 PTPRK -883752 sc-eQTL 6.12e-02 0.236 0.125 0.084 CD8_TEM L2
ENSG00000172673 THEMIS -281709 sc-eQTL 4.99e-01 0.0964 0.142 0.084 CD8_TEM L2
ENSG00000227945 AL590006.1 -390964 sc-eQTL 1.92e-01 -0.159 0.122 0.084 CD8_TEM L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 8.20e-01 -0.0336 0.148 0.089 MAIT L2
ENSG00000118518 RNF146 370312 sc-eQTL 5.01e-01 -0.105 0.156 0.089 MAIT L2
ENSG00000172673 THEMIS -281709 sc-eQTL 4.45e-01 0.0952 0.124 0.089 MAIT L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 9.13e-01 0.0168 0.153 0.089 NK_CD56bright L2
ENSG00000118518 RNF146 370312 sc-eQTL 9.38e-02 -0.268 0.159 0.089 NK_CD56bright L2
ENSG00000172673 THEMIS -281709 sc-eQTL 2.28e-02 0.264 0.115 0.089 NK_CD56bright L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 3.27e-01 0.121 0.123 0.091 NK_CD56dim L2
ENSG00000118518 RNF146 370312 sc-eQTL 9.58e-01 0.00747 0.141 0.091 NK_CD56dim L2
ENSG00000172673 THEMIS -281709 sc-eQTL 6.18e-01 -0.0699 0.14 0.091 NK_CD56dim L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 1.57e-01 0.228 0.16 0.094 NK_HLA L2
ENSG00000118518 RNF146 370312 sc-eQTL 5.89e-01 0.0901 0.166 0.094 NK_HLA L2
ENSG00000172673 THEMIS -281709 sc-eQTL 3.14e-01 -0.13 0.129 0.094 NK_HLA L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 6.50e-01 0.0622 0.137 0.091 NK_cytokine L2
ENSG00000118518 RNF146 370312 sc-eQTL 8.49e-03 0.369 0.139 0.091 NK_cytokine L2
ENSG00000172673 THEMIS -281709 sc-eQTL 4.59e-01 0.0991 0.133 0.091 NK_cytokine L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 4.20e-01 -0.129 0.159 0.074 PB L2
ENSG00000118518 RNF146 370312 sc-eQTL 9.99e-01 0.000173 0.214 0.074 PB L2
ENSG00000152894 PTPRK -883752 sc-eQTL 7.38e-01 -0.0496 0.148 0.074 PB L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 8.82e-01 -0.0179 0.12 0.091 Pro_T L2
ENSG00000118518 RNF146 370312 sc-eQTL 8.71e-01 -0.0239 0.147 0.091 Pro_T L2
ENSG00000172673 THEMIS -281709 sc-eQTL 6.18e-01 -0.051 0.102 0.091 Pro_T L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 7.03e-01 0.0561 0.147 0.09 Treg L2
ENSG00000118518 RNF146 370312 sc-eQTL 7.76e-01 0.0454 0.16 0.09 Treg L2
ENSG00000172673 THEMIS -281709 sc-eQTL 4.19e-01 0.127 0.157 0.09 Treg L2
ENSG00000214338 SOGA3 117731 sc-eQTL 3.06e-01 -0.136 0.133 0.09 Treg L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 3.63e-01 -0.138 0.151 0.093 cDC L2
ENSG00000118518 RNF146 370312 sc-eQTL 1.19e-06 0.787 0.157 0.093 cDC L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 9.75e-01 -0.00309 0.1 0.09 cMono_IL1B L2
ENSG00000118518 RNF146 370312 sc-eQTL 9.60e-01 0.00589 0.119 0.09 cMono_IL1B L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 6.80e-01 -0.0494 0.119 0.09 cMono_S100A L2
ENSG00000118518 RNF146 370312 sc-eQTL 6.96e-01 0.0506 0.129 0.09 cMono_S100A L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 8.23e-01 -0.039 0.174 0.094 gdT L2
ENSG00000118518 RNF146 370312 sc-eQTL 5.03e-01 0.118 0.176 0.094 gdT L2
ENSG00000172673 THEMIS -281709 sc-eQTL 2.51e-01 0.19 0.165 0.094 gdT L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 7.21e-01 -0.0483 0.135 0.091 intMono L2
ENSG00000118518 RNF146 370312 sc-eQTL 9.17e-01 0.0149 0.143 0.091 intMono L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 4.50e-01 0.104 0.137 0.093 ncMono L2
ENSG00000118518 RNF146 370312 sc-eQTL 3.03e-01 0.136 0.132 0.093 ncMono L2
ENSG00000093144 ECHDC1 293313 sc-eQTL 5.83e-01 -0.0809 0.147 0.082 pDC L2
ENSG00000118518 RNF146 370312 sc-eQTL 2.61e-01 0.21 0.186 0.082 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 293313 sc-eQTL 6.78e-01 0.0425 0.102 0.09 B_Memory LOneK1K
ENSG00000118518 RNF146 370312 sc-eQTL 9.46e-01 0.00998 0.147 0.09 B_Memory LOneK1K
ENSG00000152894 PTPRK -883752 sc-eQTL 4.91e-01 0.0918 0.133 0.09 B_Memory LOneK1K
ENSG00000093144 ECHDC1 293313 sc-eQTL 2.88e-01 -0.0862 0.0809 0.09 B_Naive LOneK1K
ENSG00000118518 RNF146 370312 sc-eQTL 1.52e-01 0.199 0.138 0.09 B_Naive LOneK1K
ENSG00000152894 PTPRK -883752 sc-eQTL 2.22e-01 0.124 0.101 0.09 B_Naive LOneK1K
ENSG00000093144 ECHDC1 293313 sc-eQTL 9.38e-01 -0.00707 0.0915 0.09 CD14_Mono LOneK1K
ENSG00000118518 RNF146 370312 sc-eQTL 6.86e-01 0.044 0.109 0.09 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 293313 sc-eQTL 6.54e-01 0.0569 0.127 0.091 CD16_Mono LOneK1K
ENSG00000118518 RNF146 370312 sc-eQTL 6.17e-01 0.0592 0.118 0.091 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 293313 sc-eQTL 2.83e-01 0.125 0.116 0.091 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 370312 sc-eQTL 9.02e-02 0.224 0.132 0.091 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -281709 sc-eQTL 5.06e-01 0.0948 0.142 0.091 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000172673 THEMIS -281709 eQTL 0.0284 0.0523 0.0238 0.00107 0.0 0.105

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina