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Genes within 1Mb (chr6:127624449:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 280840 sc-eQTL 5.57e-01 -0.0267 0.0454 0.679 B L1
ENSG00000118518 RNF146 357839 sc-eQTL 8.93e-01 0.00975 0.0724 0.679 B L1
ENSG00000152894 PTPRK -896225 sc-eQTL 1.64e-01 -0.0764 0.0547 0.679 B L1
ENSG00000093144 ECHDC1 280840 sc-eQTL 4.54e-01 0.0407 0.0543 0.679 CD4T L1
ENSG00000118518 RNF146 357839 sc-eQTL 6.95e-01 0.0292 0.0742 0.679 CD4T L1
ENSG00000172673 THEMIS -294182 sc-eQTL 8.71e-01 -0.00918 0.0567 0.679 CD4T L1
ENSG00000214338 SOGA3 105258 sc-eQTL 4.28e-01 -0.0382 0.0481 0.679 CD4T L1
ENSG00000093144 ECHDC1 280840 sc-eQTL 2.02e-01 0.0859 0.0671 0.679 CD8T L1
ENSG00000118518 RNF146 357839 sc-eQTL 6.58e-01 -0.0384 0.0865 0.679 CD8T L1
ENSG00000152894 PTPRK -896225 sc-eQTL 3.34e-01 -0.0454 0.0469 0.679 CD8T L1
ENSG00000172673 THEMIS -294182 sc-eQTL 9.05e-01 -0.00803 0.0672 0.679 CD8T L1
ENSG00000227945 AL590006.1 -403437 sc-eQTL 9.38e-01 0.00524 0.0673 0.679 CD8T L1
ENSG00000093144 ECHDC1 280840 sc-eQTL 9.02e-01 -0.00946 0.0766 0.68 DC L1
ENSG00000118518 RNF146 357839 sc-eQTL 5.69e-01 -0.0534 0.0935 0.68 DC L1
ENSG00000093144 ECHDC1 280840 sc-eQTL 7.94e-01 0.0138 0.0527 0.679 Mono L1
ENSG00000118518 RNF146 357839 sc-eQTL 5.47e-01 -0.0353 0.0585 0.679 Mono L1
ENSG00000093144 ECHDC1 280840 sc-eQTL 8.84e-01 -0.00947 0.0649 0.68 NK L1
ENSG00000118518 RNF146 357839 sc-eQTL 8.21e-01 -0.017 0.075 0.68 NK L1
ENSG00000172673 THEMIS -294182 sc-eQTL 9.28e-01 -0.00765 0.0849 0.68 NK L1
ENSG00000093144 ECHDC1 280840 sc-eQTL 2.56e-02 -0.133 0.0592 0.679 Other_T L1
ENSG00000118518 RNF146 357839 sc-eQTL 8.10e-01 -0.0208 0.0861 0.679 Other_T L1
ENSG00000172673 THEMIS -294182 sc-eQTL 7.10e-01 -0.0233 0.0626 0.679 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 280840 sc-eQTL 9.39e-01 -0.00792 0.104 0.686 B_Activated L2
ENSG00000118518 RNF146 357839 sc-eQTL 1.00e-01 -0.173 0.105 0.686 B_Activated L2
ENSG00000152894 PTPRK -896225 sc-eQTL 4.49e-01 -0.073 0.0962 0.686 B_Activated L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 8.23e-01 -0.0155 0.0694 0.678 B_Intermediate L2
ENSG00000118518 RNF146 357839 sc-eQTL 6.54e-01 -0.0399 0.0891 0.678 B_Intermediate L2
ENSG00000152894 PTPRK -896225 sc-eQTL 8.38e-01 -0.0178 0.0871 0.678 B_Intermediate L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 7.37e-01 -0.0268 0.0799 0.679 B_Memory L2
ENSG00000118518 RNF146 357839 sc-eQTL 8.74e-02 0.159 0.0924 0.679 B_Memory L2
ENSG00000152894 PTPRK -896225 sc-eQTL 8.44e-01 0.017 0.0864 0.679 B_Memory L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 5.97e-01 0.0284 0.0537 0.679 B_Naive1 L2
ENSG00000118518 RNF146 357839 sc-eQTL 9.51e-01 0.0052 0.0845 0.679 B_Naive1 L2
ENSG00000152894 PTPRK -896225 sc-eQTL 4.40e-01 -0.0527 0.0681 0.679 B_Naive1 L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 5.41e-01 -0.0425 0.0695 0.68 B_Naive2 L2
ENSG00000118518 RNF146 357839 sc-eQTL 1.58e-01 0.136 0.0959 0.68 B_Naive2 L2
ENSG00000152894 PTPRK -896225 sc-eQTL 1.23e-01 -0.118 0.0764 0.68 B_Naive2 L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 6.43e-01 0.0455 0.098 0.684 CD4_CTL L2
ENSG00000118518 RNF146 357839 sc-eQTL 3.50e-01 0.0898 0.0959 0.684 CD4_CTL L2
ENSG00000172673 THEMIS -294182 sc-eQTL 2.88e-03 -0.191 0.0634 0.684 CD4_CTL L2
ENSG00000214338 SOGA3 105258 sc-eQTL 6.38e-01 0.0408 0.0865 0.684 CD4_CTL L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 2.29e-01 0.0798 0.0662 0.679 CD4_Naive L2
ENSG00000118518 RNF146 357839 sc-eQTL 9.28e-01 -0.00723 0.0794 0.679 CD4_Naive L2
ENSG00000172673 THEMIS -294182 sc-eQTL 6.41e-01 0.0266 0.057 0.679 CD4_Naive L2
ENSG00000214338 SOGA3 105258 sc-eQTL 4.87e-01 -0.0377 0.0542 0.679 CD4_Naive L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 6.86e-01 0.0277 0.0685 0.679 CD4_TCM L2
ENSG00000118518 RNF146 357839 sc-eQTL 6.50e-01 0.0404 0.0888 0.679 CD4_TCM L2
ENSG00000172673 THEMIS -294182 sc-eQTL 9.83e-01 -0.00136 0.0655 0.679 CD4_TCM L2
ENSG00000214338 SOGA3 105258 sc-eQTL 3.56e-01 -0.0621 0.0672 0.679 CD4_TCM L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 9.75e-01 0.00255 0.0813 0.679 CD4_TEM L2
ENSG00000118518 RNF146 357839 sc-eQTL 6.24e-01 0.0454 0.0924 0.679 CD4_TEM L2
ENSG00000172673 THEMIS -294182 sc-eQTL 1.50e-01 -0.106 0.0736 0.679 CD4_TEM L2
ENSG00000214338 SOGA3 105258 sc-eQTL 8.28e-01 0.0167 0.0765 0.679 CD4_TEM L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 3.26e-01 0.0803 0.0815 0.679 CD8_CTL L2
ENSG00000118518 RNF146 357839 sc-eQTL 4.50e-01 -0.0731 0.0966 0.679 CD8_CTL L2
ENSG00000152894 PTPRK -896225 sc-eQTL 3.46e-01 0.0769 0.0815 0.679 CD8_CTL L2
ENSG00000172673 THEMIS -294182 sc-eQTL 3.27e-01 0.0684 0.0697 0.679 CD8_CTL L2
ENSG00000227945 AL590006.1 -403437 sc-eQTL 2.39e-01 0.0816 0.0691 0.679 CD8_CTL L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 1.38e-01 0.124 0.083 0.679 CD8_Naive L2
ENSG00000118518 RNF146 357839 sc-eQTL 7.30e-01 -0.0309 0.0894 0.679 CD8_Naive L2
ENSG00000152894 PTPRK -896225 sc-eQTL 2.82e-01 -0.0705 0.0654 0.679 CD8_Naive L2
ENSG00000172673 THEMIS -294182 sc-eQTL 5.96e-01 0.0296 0.0557 0.679 CD8_Naive L2
ENSG00000227945 AL590006.1 -403437 sc-eQTL 5.64e-01 -0.0491 0.0849 0.679 CD8_Naive L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 1.08e-01 -0.138 0.0857 0.681 CD8_TCM L2
ENSG00000118518 RNF146 357839 sc-eQTL 8.03e-01 -0.025 0.1 0.681 CD8_TCM L2
ENSG00000152894 PTPRK -896225 sc-eQTL 8.38e-02 0.141 0.0812 0.681 CD8_TCM L2
ENSG00000172673 THEMIS -294182 sc-eQTL 7.34e-01 -0.0297 0.0873 0.681 CD8_TCM L2
ENSG00000227945 AL590006.1 -403437 sc-eQTL 7.53e-01 0.0253 0.0801 0.681 CD8_TCM L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 7.88e-01 0.0253 0.0938 0.687 CD8_TEM L2
ENSG00000118518 RNF146 357839 sc-eQTL 2.27e-01 0.116 0.0953 0.687 CD8_TEM L2
ENSG00000152894 PTPRK -896225 sc-eQTL 6.82e-01 -0.0308 0.0752 0.687 CD8_TEM L2
ENSG00000172673 THEMIS -294182 sc-eQTL 4.48e-01 -0.0645 0.0848 0.687 CD8_TEM L2
ENSG00000227945 AL590006.1 -403437 sc-eQTL 3.15e-01 -0.0732 0.0727 0.687 CD8_TEM L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 8.17e-01 0.0202 0.0873 0.686 MAIT L2
ENSG00000118518 RNF146 357839 sc-eQTL 6.81e-01 -0.0381 0.0925 0.686 MAIT L2
ENSG00000172673 THEMIS -294182 sc-eQTL 4.53e-01 -0.0553 0.0737 0.686 MAIT L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 6.66e-01 0.0401 0.0927 0.676 NK_CD56bright L2
ENSG00000118518 RNF146 357839 sc-eQTL 3.65e-01 0.0879 0.0969 0.676 NK_CD56bright L2
ENSG00000172673 THEMIS -294182 sc-eQTL 2.24e-01 -0.0857 0.0703 0.676 NK_CD56bright L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 5.17e-01 0.0472 0.0728 0.679 NK_CD56dim L2
ENSG00000118518 RNF146 357839 sc-eQTL 1.65e-01 -0.116 0.0832 0.679 NK_CD56dim L2
ENSG00000172673 THEMIS -294182 sc-eQTL 5.44e-01 -0.0502 0.0826 0.679 NK_CD56dim L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 5.78e-01 0.053 0.0951 0.674 NK_HLA L2
ENSG00000118518 RNF146 357839 sc-eQTL 9.92e-01 0.000948 0.0982 0.674 NK_HLA L2
ENSG00000172673 THEMIS -294182 sc-eQTL 3.11e-01 0.0775 0.0763 0.674 NK_HLA L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 3.60e-01 -0.0733 0.08 0.679 NK_cytokine L2
ENSG00000118518 RNF146 357839 sc-eQTL 3.79e-01 0.0729 0.0826 0.679 NK_cytokine L2
ENSG00000172673 THEMIS -294182 sc-eQTL 8.98e-01 -0.01 0.0783 0.679 NK_cytokine L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 1.23e-01 0.146 0.0936 0.678 PB L2
ENSG00000118518 RNF146 357839 sc-eQTL 3.73e-01 -0.113 0.126 0.678 PB L2
ENSG00000152894 PTPRK -896225 sc-eQTL 2.10e-01 -0.11 0.0871 0.678 PB L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 2.66e-02 -0.161 0.0721 0.68 Pro_T L2
ENSG00000118518 RNF146 357839 sc-eQTL 3.38e-01 -0.0855 0.089 0.68 Pro_T L2
ENSG00000172673 THEMIS -294182 sc-eQTL 7.56e-01 -0.0193 0.062 0.68 Pro_T L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 8.58e-01 -0.0156 0.0871 0.679 Treg L2
ENSG00000118518 RNF146 357839 sc-eQTL 8.34e-01 -0.0198 0.0945 0.679 Treg L2
ENSG00000172673 THEMIS -294182 sc-eQTL 2.79e-01 0.1 0.0925 0.679 Treg L2
ENSG00000214338 SOGA3 105258 sc-eQTL 3.18e-01 0.0787 0.0786 0.679 Treg L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 8.81e-01 -0.0137 0.0909 0.666 cDC L2
ENSG00000118518 RNF146 357839 sc-eQTL 3.79e-03 -0.288 0.0981 0.666 cDC L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 9.15e-01 -0.0064 0.0596 0.679 cMono_IL1B L2
ENSG00000118518 RNF146 357839 sc-eQTL 9.24e-01 -0.00673 0.0704 0.679 cMono_IL1B L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 6.88e-01 0.0282 0.0701 0.679 cMono_S100A L2
ENSG00000118518 RNF146 357839 sc-eQTL 8.96e-01 -0.00993 0.0761 0.679 cMono_S100A L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 2.62e-01 -0.121 0.107 0.682 gdT L2
ENSG00000118518 RNF146 357839 sc-eQTL 3.30e-01 0.106 0.109 0.682 gdT L2
ENSG00000172673 THEMIS -294182 sc-eQTL 5.79e-01 -0.057 0.103 0.682 gdT L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 8.70e-01 0.013 0.0798 0.682 intMono L2
ENSG00000118518 RNF146 357839 sc-eQTL 1.12e-01 -0.134 0.0837 0.682 intMono L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 4.16e-01 0.068 0.0835 0.686 ncMono L2
ENSG00000118518 RNF146 357839 sc-eQTL 6.71e-01 0.0343 0.0806 0.686 ncMono L2
ENSG00000093144 ECHDC1 280840 sc-eQTL 6.78e-01 -0.0348 0.0836 0.681 pDC L2
ENSG00000118518 RNF146 357839 sc-eQTL 3.55e-01 0.0983 0.106 0.681 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 280840 sc-eQTL 3.17e-01 -0.0602 0.06 0.679 B_Memory LOneK1K
ENSG00000118518 RNF146 357839 sc-eQTL 9.11e-01 -0.00967 0.0864 0.679 B_Memory LOneK1K
ENSG00000152894 PTPRK -896225 sc-eQTL 8.70e-01 -0.0128 0.0784 0.679 B_Memory LOneK1K
ENSG00000093144 ECHDC1 280840 sc-eQTL 9.30e-01 0.00432 0.0494 0.679 B_Naive LOneK1K
ENSG00000118518 RNF146 357839 sc-eQTL 4.45e-01 0.0646 0.0845 0.679 B_Naive LOneK1K
ENSG00000152894 PTPRK -896225 sc-eQTL 1.68e-01 -0.0854 0.0617 0.679 B_Naive LOneK1K
ENSG00000093144 ECHDC1 280840 sc-eQTL 9.17e-01 0.00572 0.0545 0.679 CD14_Mono LOneK1K
ENSG00000118518 RNF146 357839 sc-eQTL 5.56e-01 -0.0383 0.0649 0.679 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 280840 sc-eQTL 6.17e-01 0.038 0.0758 0.683 CD16_Mono LOneK1K
ENSG00000118518 RNF146 357839 sc-eQTL 5.84e-01 -0.0388 0.0708 0.683 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 280840 sc-eQTL 8.73e-01 0.011 0.0685 0.679 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 357839 sc-eQTL 9.34e-01 -0.00644 0.0779 0.679 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -294182 sc-eQTL 7.52e-01 -0.0265 0.0838 0.679 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 280840 eQTL 0.00917 -0.0473 0.0181 0.0 0.0 0.317
ENSG00000118518 RNF146 357839 eQTL 0.0232 0.0294 0.0129 0.0 0.0 0.317
ENSG00000146374 RSPO3 505778 pQTL 0.00998 -0.0539 0.0209 0.00251 0.0 0.315
ENSG00000189367 KIAA0408 165060 eQTL 0.0363 0.0859 0.041 0.00134 0.0 0.317

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000093144 ECHDC1 280840 1.11e-06 6.97e-07 1.22e-07 3.1e-07 9.86e-08 2.86e-07 6.19e-07 1.03e-07 4.74e-07 2.82e-07 7.67e-07 3.61e-07 9.57e-07 2.06e-07 2.57e-07 2.69e-07 3.52e-07 4.2e-07 2.88e-07 1.86e-07 2.05e-07 3.65e-07 4.2e-07 1.76e-07 1.35e-06 2.68e-07 2.71e-07 2.63e-07 5.41e-07 6.35e-07 3.49e-07 5.77e-08 5.6e-08 2.22e-07 3.39e-07 1.16e-07 1.23e-07 1.11e-07 6.66e-08 2.53e-08 1.18e-07 6.49e-07 1.96e-08 5.77e-09 1.26e-07 4.57e-08 1.29e-07 2.25e-08 5.05e-08