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Genes within 1Mb (chr6:127614887:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 271278 sc-eQTL 6.40e-01 -0.0213 0.0455 0.686 B L1
ENSG00000118518 RNF146 348277 sc-eQTL 8.28e-01 0.0158 0.0725 0.686 B L1
ENSG00000152894 PTPRK -905787 sc-eQTL 9.63e-02 -0.0913 0.0547 0.686 B L1
ENSG00000093144 ECHDC1 271278 sc-eQTL 4.72e-01 0.0393 0.0546 0.686 CD4T L1
ENSG00000118518 RNF146 348277 sc-eQTL 5.42e-01 0.0456 0.0746 0.686 CD4T L1
ENSG00000172673 THEMIS -303744 sc-eQTL 8.42e-01 -0.0114 0.057 0.686 CD4T L1
ENSG00000214338 SOGA3 95696 sc-eQTL 2.84e-01 -0.0519 0.0483 0.686 CD4T L1
ENSG00000093144 ECHDC1 271278 sc-eQTL 1.98e-01 0.0871 0.0675 0.686 CD8T L1
ENSG00000118518 RNF146 348277 sc-eQTL 6.69e-01 -0.0372 0.0871 0.686 CD8T L1
ENSG00000152894 PTPRK -905787 sc-eQTL 4.38e-01 -0.0367 0.0472 0.686 CD8T L1
ENSG00000172673 THEMIS -303744 sc-eQTL 9.83e-01 -0.00146 0.0677 0.686 CD8T L1
ENSG00000227945 AL590006.1 -412999 sc-eQTL 8.89e-01 -0.00943 0.0677 0.686 CD8T L1
ENSG00000093144 ECHDC1 271278 sc-eQTL 8.11e-01 -0.0184 0.0772 0.687 DC L1
ENSG00000118518 RNF146 348277 sc-eQTL 6.67e-01 -0.0407 0.0942 0.687 DC L1
ENSG00000093144 ECHDC1 271278 sc-eQTL 8.15e-01 0.0124 0.053 0.686 Mono L1
ENSG00000118518 RNF146 348277 sc-eQTL 5.58e-01 -0.0345 0.0588 0.686 Mono L1
ENSG00000093144 ECHDC1 271278 sc-eQTL 9.81e-01 0.00153 0.0654 0.687 NK L1
ENSG00000118518 RNF146 348277 sc-eQTL 9.59e-01 -0.00387 0.0756 0.687 NK L1
ENSG00000172673 THEMIS -303744 sc-eQTL 9.15e-01 -0.00919 0.0855 0.687 NK L1
ENSG00000093144 ECHDC1 271278 sc-eQTL 3.32e-02 -0.128 0.0596 0.686 Other_T L1
ENSG00000118518 RNF146 348277 sc-eQTL 8.64e-01 -0.0149 0.0867 0.686 Other_T L1
ENSG00000172673 THEMIS -303744 sc-eQTL 8.07e-01 -0.0154 0.063 0.686 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 271278 sc-eQTL 9.76e-01 0.00318 0.105 0.694 B_Activated L2
ENSG00000118518 RNF146 348277 sc-eQTL 1.35e-01 -0.159 0.106 0.694 B_Activated L2
ENSG00000152894 PTPRK -905787 sc-eQTL 5.24e-01 -0.0621 0.0973 0.694 B_Activated L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 7.86e-01 -0.019 0.07 0.685 B_Intermediate L2
ENSG00000118518 RNF146 348277 sc-eQTL 5.89e-01 -0.0485 0.0898 0.685 B_Intermediate L2
ENSG00000152894 PTPRK -905787 sc-eQTL 7.54e-01 -0.0275 0.0877 0.685 B_Intermediate L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 9.71e-01 0.00295 0.0805 0.685 B_Memory L2
ENSG00000118518 RNF146 348277 sc-eQTL 9.37e-02 0.157 0.0931 0.685 B_Memory L2
ENSG00000152894 PTPRK -905787 sc-eQTL 9.95e-01 -0.000514 0.087 0.685 B_Memory L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 5.55e-01 0.032 0.0541 0.686 B_Naive1 L2
ENSG00000118518 RNF146 348277 sc-eQTL 8.25e-01 0.0189 0.0851 0.686 B_Naive1 L2
ENSG00000152894 PTPRK -905787 sc-eQTL 3.15e-01 -0.0691 0.0685 0.686 B_Naive1 L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 5.56e-01 -0.0412 0.0699 0.687 B_Naive2 L2
ENSG00000118518 RNF146 348277 sc-eQTL 1.29e-01 0.147 0.0964 0.687 B_Naive2 L2
ENSG00000152894 PTPRK -905787 sc-eQTL 1.56e-01 -0.109 0.0769 0.687 B_Naive2 L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 7.45e-01 0.0322 0.0987 0.691 CD4_CTL L2
ENSG00000118518 RNF146 348277 sc-eQTL 2.70e-01 0.107 0.0964 0.691 CD4_CTL L2
ENSG00000172673 THEMIS -303744 sc-eQTL 1.76e-03 -0.202 0.0636 0.691 CD4_CTL L2
ENSG00000214338 SOGA3 95696 sc-eQTL 8.84e-01 0.0128 0.0872 0.691 CD4_CTL L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 2.19e-01 0.0821 0.0665 0.686 CD4_Naive L2
ENSG00000118518 RNF146 348277 sc-eQTL 9.39e-01 0.00608 0.0798 0.686 CD4_Naive L2
ENSG00000172673 THEMIS -303744 sc-eQTL 6.41e-01 0.0268 0.0573 0.686 CD4_Naive L2
ENSG00000214338 SOGA3 95696 sc-eQTL 4.11e-01 -0.0449 0.0545 0.686 CD4_Naive L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 7.19e-01 0.0249 0.0689 0.686 CD4_TCM L2
ENSG00000118518 RNF146 348277 sc-eQTL 6.01e-01 0.0468 0.0892 0.686 CD4_TCM L2
ENSG00000172673 THEMIS -303744 sc-eQTL 9.67e-01 0.00277 0.0658 0.686 CD4_TCM L2
ENSG00000214338 SOGA3 95696 sc-eQTL 2.75e-01 -0.0738 0.0675 0.686 CD4_TCM L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 9.71e-01 0.00297 0.0819 0.686 CD4_TEM L2
ENSG00000118518 RNF146 348277 sc-eQTL 5.72e-01 0.0527 0.0931 0.686 CD4_TEM L2
ENSG00000172673 THEMIS -303744 sc-eQTL 2.27e-01 -0.09 0.0743 0.686 CD4_TEM L2
ENSG00000214338 SOGA3 95696 sc-eQTL 8.55e-01 0.0141 0.0771 0.686 CD4_TEM L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 5.24e-01 0.0524 0.0823 0.686 CD8_CTL L2
ENSG00000118518 RNF146 348277 sc-eQTL 6.36e-01 -0.0461 0.0974 0.686 CD8_CTL L2
ENSG00000152894 PTPRK -905787 sc-eQTL 3.46e-01 0.0776 0.0821 0.686 CD8_CTL L2
ENSG00000172673 THEMIS -303744 sc-eQTL 2.91e-01 0.0744 0.0702 0.686 CD8_CTL L2
ENSG00000227945 AL590006.1 -412999 sc-eQTL 3.03e-01 0.072 0.0698 0.686 CD8_CTL L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 1.25e-01 0.129 0.0835 0.686 CD8_Naive L2
ENSG00000118518 RNF146 348277 sc-eQTL 6.25e-01 -0.044 0.0899 0.686 CD8_Naive L2
ENSG00000152894 PTPRK -905787 sc-eQTL 3.45e-01 -0.0624 0.0659 0.686 CD8_Naive L2
ENSG00000172673 THEMIS -303744 sc-eQTL 4.08e-01 0.0464 0.056 0.686 CD8_Naive L2
ENSG00000227945 AL590006.1 -412999 sc-eQTL 4.99e-01 -0.0578 0.0855 0.686 CD8_Naive L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 1.19e-01 -0.136 0.0864 0.688 CD8_TCM L2
ENSG00000118518 RNF146 348277 sc-eQTL 8.89e-01 -0.0141 0.101 0.688 CD8_TCM L2
ENSG00000152894 PTPRK -905787 sc-eQTL 4.15e-02 0.167 0.0816 0.688 CD8_TCM L2
ENSG00000172673 THEMIS -303744 sc-eQTL 7.33e-01 -0.0301 0.088 0.688 CD8_TCM L2
ENSG00000227945 AL590006.1 -412999 sc-eQTL 6.39e-01 0.0379 0.0807 0.688 CD8_TCM L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 7.93e-01 0.0249 0.0944 0.694 CD8_TEM L2
ENSG00000118518 RNF146 348277 sc-eQTL 2.67e-01 0.107 0.0961 0.694 CD8_TEM L2
ENSG00000152894 PTPRK -905787 sc-eQTL 5.44e-01 -0.0461 0.0758 0.694 CD8_TEM L2
ENSG00000172673 THEMIS -303744 sc-eQTL 4.20e-01 -0.069 0.0854 0.694 CD8_TEM L2
ENSG00000227945 AL590006.1 -412999 sc-eQTL 3.67e-01 -0.0662 0.0732 0.694 CD8_TEM L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 7.50e-01 0.028 0.0879 0.693 MAIT L2
ENSG00000118518 RNF146 348277 sc-eQTL 6.82e-01 -0.0382 0.0931 0.693 MAIT L2
ENSG00000172673 THEMIS -303744 sc-eQTL 5.14e-01 -0.0485 0.0742 0.693 MAIT L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 6.31e-01 0.045 0.0935 0.682 NK_CD56bright L2
ENSG00000118518 RNF146 348277 sc-eQTL 3.42e-01 0.093 0.0976 0.682 NK_CD56bright L2
ENSG00000172673 THEMIS -303744 sc-eQTL 1.65e-01 -0.0987 0.0708 0.682 NK_CD56bright L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 4.41e-01 0.0566 0.0733 0.685 NK_CD56dim L2
ENSG00000118518 RNF146 348277 sc-eQTL 2.61e-01 -0.0946 0.0839 0.685 NK_CD56dim L2
ENSG00000172673 THEMIS -303744 sc-eQTL 4.20e-01 -0.0673 0.0832 0.685 NK_CD56dim L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 3.44e-01 0.0908 0.0957 0.68 NK_HLA L2
ENSG00000118518 RNF146 348277 sc-eQTL 9.77e-01 -0.00284 0.0989 0.68 NK_HLA L2
ENSG00000172673 THEMIS -303744 sc-eQTL 2.29e-01 0.0926 0.0768 0.68 NK_HLA L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 4.24e-01 -0.0647 0.0807 0.685 NK_cytokine L2
ENSG00000118518 RNF146 348277 sc-eQTL 3.44e-01 0.079 0.0832 0.685 NK_cytokine L2
ENSG00000172673 THEMIS -303744 sc-eQTL 9.41e-01 -0.00581 0.0789 0.685 NK_cytokine L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 1.23e-01 0.146 0.0936 0.678 PB L2
ENSG00000118518 RNF146 348277 sc-eQTL 3.73e-01 -0.113 0.126 0.678 PB L2
ENSG00000152894 PTPRK -905787 sc-eQTL 2.10e-01 -0.11 0.0871 0.678 PB L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 3.24e-02 -0.157 0.0728 0.687 Pro_T L2
ENSG00000118518 RNF146 348277 sc-eQTL 3.97e-01 -0.0762 0.0899 0.687 Pro_T L2
ENSG00000172673 THEMIS -303744 sc-eQTL 9.55e-01 0.00352 0.0625 0.687 Pro_T L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 7.47e-01 -0.0284 0.0878 0.686 Treg L2
ENSG00000118518 RNF146 348277 sc-eQTL 9.64e-01 -0.00437 0.0953 0.686 Treg L2
ENSG00000172673 THEMIS -303744 sc-eQTL 2.43e-01 0.109 0.0933 0.686 Treg L2
ENSG00000214338 SOGA3 95696 sc-eQTL 4.09e-01 0.0657 0.0793 0.686 Treg L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 9.96e-01 -0.000491 0.0916 0.673 cDC L2
ENSG00000118518 RNF146 348277 sc-eQTL 3.54e-03 -0.292 0.0988 0.673 cDC L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 9.84e-01 -0.00123 0.06 0.686 cMono_IL1B L2
ENSG00000118518 RNF146 348277 sc-eQTL 9.30e-01 0.00623 0.0709 0.686 cMono_IL1B L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 7.15e-01 0.0258 0.0704 0.686 cMono_S100A L2
ENSG00000118518 RNF146 348277 sc-eQTL 8.25e-01 -0.017 0.0764 0.686 cMono_S100A L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 3.27e-01 -0.105 0.107 0.691 gdT L2
ENSG00000118518 RNF146 348277 sc-eQTL 2.95e-01 0.114 0.108 0.691 gdT L2
ENSG00000172673 THEMIS -303744 sc-eQTL 7.16e-01 -0.0372 0.102 0.691 gdT L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 9.10e-01 0.00908 0.0802 0.689 intMono L2
ENSG00000118518 RNF146 348277 sc-eQTL 9.94e-02 -0.139 0.084 0.689 intMono L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 3.84e-01 0.0734 0.084 0.692 ncMono L2
ENSG00000118518 RNF146 348277 sc-eQTL 8.63e-01 0.0141 0.0812 0.692 ncMono L2
ENSG00000093144 ECHDC1 271278 sc-eQTL 5.46e-01 -0.0515 0.085 0.689 pDC L2
ENSG00000118518 RNF146 348277 sc-eQTL 1.82e-01 0.144 0.107 0.689 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 271278 sc-eQTL 3.82e-01 -0.053 0.0605 0.686 B_Memory LOneK1K
ENSG00000118518 RNF146 348277 sc-eQTL 8.27e-01 -0.0191 0.087 0.686 B_Memory LOneK1K
ENSG00000152894 PTPRK -905787 sc-eQTL 7.38e-01 -0.0265 0.0789 0.686 B_Memory LOneK1K
ENSG00000093144 ECHDC1 271278 sc-eQTL 9.00e-01 0.00623 0.0497 0.686 B_Naive LOneK1K
ENSG00000118518 RNF146 348277 sc-eQTL 3.20e-01 0.0847 0.085 0.686 B_Naive LOneK1K
ENSG00000152894 PTPRK -905787 sc-eQTL 1.27e-01 -0.0951 0.062 0.686 B_Naive LOneK1K
ENSG00000093144 ECHDC1 271278 sc-eQTL 9.27e-01 0.00501 0.0548 0.686 CD14_Mono LOneK1K
ENSG00000118518 RNF146 348277 sc-eQTL 6.02e-01 -0.0341 0.0653 0.686 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 271278 sc-eQTL 5.95e-01 0.0406 0.0761 0.69 CD16_Mono LOneK1K
ENSG00000118518 RNF146 348277 sc-eQTL 4.19e-01 -0.0576 0.071 0.69 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 271278 sc-eQTL 7.41e-01 0.0229 0.069 0.685 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 348277 sc-eQTL 9.46e-01 0.00535 0.0784 0.685 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -303744 sc-eQTL 7.66e-01 -0.0252 0.0844 0.685 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 271278 eQTL 0.011 -0.0462 0.0181 0.0 0.0 0.313
ENSG00000118518 RNF146 348277 eQTL 0.0222 0.0296 0.0129 0.0 0.0 0.313
ENSG00000146374 RSPO3 496216 pQTL 0.0121 -0.0525 0.0209 0.00226 0.0 0.31
ENSG00000189367 KIAA0408 155498 eQTL 0.0384 0.085 0.041 0.0013 0.0 0.313

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000093144 ECHDC1 271278 1.3e-06 1.19e-06 2.54e-07 1.14e-06 2.98e-07 6.02e-07 1.57e-06 3.31e-07 1.48e-06 5.98e-07 1.84e-06 7.04e-07 2.34e-06 2.98e-07 5.65e-07 9.19e-07 8.89e-07 7e-07 8.2e-07 6.31e-07 6.61e-07 1.6e-06 8.94e-07 6.33e-07 2.17e-06 5.53e-07 8.99e-07 7.14e-07 1.38e-06 1.25e-06 7.84e-07 1.73e-07 2.54e-07 7.04e-07 5.2e-07 4.56e-07 6.66e-07 2.42e-07 4.52e-07 2.45e-07 2.89e-07 1.65e-06 1.68e-07 2.68e-08 1.88e-07 1.59e-07 2.15e-07 3.7e-08 1.23e-07