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Genes within 1Mb (chr6:127611817:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 268208 sc-eQTL 6.69e-01 0.0208 0.0485 0.244 B L1
ENSG00000118518 RNF146 345207 sc-eQTL 3.82e-01 -0.0677 0.0772 0.244 B L1
ENSG00000152894 PTPRK -908857 sc-eQTL 2.05e-01 0.0743 0.0585 0.244 B L1
ENSG00000093144 ECHDC1 268208 sc-eQTL 9.41e-02 -0.0982 0.0584 0.244 CD4T L1
ENSG00000118518 RNF146 345207 sc-eQTL 3.52e-01 -0.0747 0.0801 0.244 CD4T L1
ENSG00000172673 THEMIS -306814 sc-eQTL 7.77e-01 -0.0174 0.0612 0.244 CD4T L1
ENSG00000214338 SOGA3 92626 sc-eQTL 2.46e-01 0.0603 0.0519 0.244 CD4T L1
ENSG00000093144 ECHDC1 268208 sc-eQTL 1.72e-01 -0.0992 0.0724 0.244 CD8T L1
ENSG00000118518 RNF146 345207 sc-eQTL 4.29e-01 0.0739 0.0934 0.244 CD8T L1
ENSG00000152894 PTPRK -908857 sc-eQTL 5.04e-01 0.0339 0.0507 0.244 CD8T L1
ENSG00000172673 THEMIS -306814 sc-eQTL 8.07e-01 -0.0178 0.0726 0.244 CD8T L1
ENSG00000227945 AL590006.1 -416069 sc-eQTL 6.41e-01 0.0339 0.0726 0.244 CD8T L1
ENSG00000093144 ECHDC1 268208 sc-eQTL 2.01e-01 0.107 0.0836 0.243 DC L1
ENSG00000118518 RNF146 345207 sc-eQTL 1.76e-01 -0.139 0.102 0.243 DC L1
ENSG00000093144 ECHDC1 268208 sc-eQTL 9.96e-01 -0.00027 0.057 0.244 Mono L1
ENSG00000118518 RNF146 345207 sc-eQTL 3.84e-01 0.0551 0.0632 0.244 Mono L1
ENSG00000093144 ECHDC1 268208 sc-eQTL 5.87e-01 -0.0385 0.0707 0.242 NK L1
ENSG00000118518 RNF146 345207 sc-eQTL 5.73e-01 -0.0461 0.0817 0.242 NK L1
ENSG00000172673 THEMIS -306814 sc-eQTL 6.86e-01 -0.0375 0.0925 0.242 NK L1
ENSG00000093144 ECHDC1 268208 sc-eQTL 2.81e-02 0.142 0.0641 0.244 Other_T L1
ENSG00000118518 RNF146 345207 sc-eQTL 8.30e-01 -0.02 0.0932 0.244 Other_T L1
ENSG00000172673 THEMIS -306814 sc-eQTL 8.17e-01 0.0157 0.0677 0.244 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 268208 sc-eQTL 6.23e-01 0.0565 0.115 0.227 B_Activated L2
ENSG00000118518 RNF146 345207 sc-eQTL 1.99e-01 0.149 0.116 0.227 B_Activated L2
ENSG00000152894 PTPRK -908857 sc-eQTL 6.04e-01 0.0553 0.106 0.227 B_Activated L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 8.22e-01 -0.017 0.0753 0.245 B_Intermediate L2
ENSG00000118518 RNF146 345207 sc-eQTL 6.87e-01 0.039 0.0967 0.245 B_Intermediate L2
ENSG00000152894 PTPRK -908857 sc-eQTL 8.76e-01 0.0147 0.0945 0.245 B_Intermediate L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 7.30e-01 -0.0298 0.0861 0.244 B_Memory L2
ENSG00000118518 RNF146 345207 sc-eQTL 3.18e-02 -0.214 0.0991 0.244 B_Memory L2
ENSG00000152894 PTPRK -908857 sc-eQTL 3.42e-01 0.0885 0.0929 0.244 B_Memory L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 7.45e-01 -0.0189 0.058 0.244 B_Naive1 L2
ENSG00000118518 RNF146 345207 sc-eQTL 3.03e-01 -0.0938 0.091 0.244 B_Naive1 L2
ENSG00000152894 PTPRK -908857 sc-eQTL 2.41e-01 0.0862 0.0734 0.244 B_Naive1 L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 3.25e-01 0.0734 0.0744 0.242 B_Naive2 L2
ENSG00000118518 RNF146 345207 sc-eQTL 6.59e-02 -0.189 0.102 0.242 B_Naive2 L2
ENSG00000152894 PTPRK -908857 sc-eQTL 6.78e-01 0.0342 0.0823 0.242 B_Naive2 L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 7.42e-01 -0.0343 0.104 0.243 CD4_CTL L2
ENSG00000118518 RNF146 345207 sc-eQTL 5.60e-01 -0.0593 0.102 0.243 CD4_CTL L2
ENSG00000172673 THEMIS -306814 sc-eQTL 1.12e-02 0.173 0.0676 0.243 CD4_CTL L2
ENSG00000214338 SOGA3 92626 sc-eQTL 9.96e-01 -0.000431 0.0918 0.243 CD4_CTL L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 4.98e-02 -0.14 0.0709 0.244 CD4_Naive L2
ENSG00000118518 RNF146 345207 sc-eQTL 9.91e-01 -0.000945 0.0855 0.244 CD4_Naive L2
ENSG00000172673 THEMIS -306814 sc-eQTL 4.19e-01 -0.0497 0.0613 0.244 CD4_Naive L2
ENSG00000214338 SOGA3 92626 sc-eQTL 3.13e-01 0.0589 0.0583 0.244 CD4_Naive L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 3.83e-01 -0.0641 0.0733 0.244 CD4_TCM L2
ENSG00000118518 RNF146 345207 sc-eQTL 1.20e-01 -0.148 0.0946 0.244 CD4_TCM L2
ENSG00000172673 THEMIS -306814 sc-eQTL 3.27e-01 -0.0687 0.0699 0.244 CD4_TCM L2
ENSG00000214338 SOGA3 92626 sc-eQTL 4.50e-01 0.0545 0.072 0.244 CD4_TCM L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 7.80e-01 -0.0245 0.0876 0.244 CD4_TEM L2
ENSG00000118518 RNF146 345207 sc-eQTL 3.72e-01 -0.0889 0.0994 0.244 CD4_TEM L2
ENSG00000172673 THEMIS -306814 sc-eQTL 5.09e-01 0.0527 0.0796 0.244 CD4_TEM L2
ENSG00000214338 SOGA3 92626 sc-eQTL 9.77e-01 -0.00238 0.0824 0.244 CD4_TEM L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 6.88e-01 -0.0356 0.0887 0.244 CD8_CTL L2
ENSG00000118518 RNF146 345207 sc-eQTL 6.61e-01 0.0462 0.105 0.244 CD8_CTL L2
ENSG00000152894 PTPRK -908857 sc-eQTL 1.76e-01 -0.12 0.0884 0.244 CD8_CTL L2
ENSG00000172673 THEMIS -306814 sc-eQTL 4.51e-01 -0.0573 0.0758 0.244 CD8_CTL L2
ENSG00000227945 AL590006.1 -416069 sc-eQTL 4.35e-01 -0.0589 0.0753 0.244 CD8_CTL L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 5.93e-02 -0.167 0.0882 0.244 CD8_Naive L2
ENSG00000118518 RNF146 345207 sc-eQTL 5.61e-01 0.0554 0.0952 0.244 CD8_Naive L2
ENSG00000152894 PTPRK -908857 sc-eQTL 3.07e-01 0.0714 0.0698 0.244 CD8_Naive L2
ENSG00000172673 THEMIS -306814 sc-eQTL 3.20e-01 -0.0591 0.0592 0.244 CD8_Naive L2
ENSG00000227945 AL590006.1 -416069 sc-eQTL 2.80e-01 0.0979 0.0903 0.244 CD8_Naive L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 5.80e-02 0.178 0.0934 0.243 CD8_TCM L2
ENSG00000118518 RNF146 345207 sc-eQTL 9.13e-01 0.012 0.109 0.243 CD8_TCM L2
ENSG00000152894 PTPRK -908857 sc-eQTL 3.51e-02 -0.188 0.0884 0.243 CD8_TCM L2
ENSG00000172673 THEMIS -306814 sc-eQTL 8.20e-01 -0.0217 0.0954 0.243 CD8_TCM L2
ENSG00000227945 AL590006.1 -416069 sc-eQTL 4.46e-01 -0.0667 0.0874 0.243 CD8_TCM L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 6.23e-01 -0.0495 0.1 0.24 CD8_TEM L2
ENSG00000118518 RNF146 345207 sc-eQTL 7.14e-01 -0.0376 0.103 0.24 CD8_TEM L2
ENSG00000152894 PTPRK -908857 sc-eQTL 8.46e-01 -0.0157 0.0807 0.24 CD8_TEM L2
ENSG00000172673 THEMIS -306814 sc-eQTL 4.30e-01 0.0719 0.0909 0.24 CD8_TEM L2
ENSG00000227945 AL590006.1 -416069 sc-eQTL 1.37e-01 0.116 0.0777 0.24 CD8_TEM L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 8.45e-01 -0.0183 0.0935 0.238 MAIT L2
ENSG00000118518 RNF146 345207 sc-eQTL 9.67e-01 -0.0041 0.099 0.238 MAIT L2
ENSG00000172673 THEMIS -306814 sc-eQTL 4.38e-01 0.0613 0.0788 0.238 MAIT L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 9.72e-01 -0.00349 0.101 0.247 NK_CD56bright L2
ENSG00000118518 RNF146 345207 sc-eQTL 6.32e-01 -0.0504 0.105 0.247 NK_CD56bright L2
ENSG00000172673 THEMIS -306814 sc-eQTL 8.60e-01 0.0135 0.0765 0.247 NK_CD56bright L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 1.77e-01 -0.108 0.0794 0.244 NK_CD56dim L2
ENSG00000118518 RNF146 345207 sc-eQTL 2.84e-01 0.0981 0.0912 0.244 NK_CD56dim L2
ENSG00000172673 THEMIS -306814 sc-eQTL 3.47e-01 0.0852 0.0904 0.244 NK_CD56dim L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 9.45e-02 -0.177 0.105 0.247 NK_HLA L2
ENSG00000118518 RNF146 345207 sc-eQTL 8.74e-01 -0.0173 0.11 0.247 NK_HLA L2
ENSG00000172673 THEMIS -306814 sc-eQTL 3.74e-01 -0.0759 0.0852 0.247 NK_HLA L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 2.69e-01 0.0966 0.0872 0.244 NK_cytokine L2
ENSG00000118518 RNF146 345207 sc-eQTL 1.73e-02 -0.214 0.089 0.244 NK_cytokine L2
ENSG00000172673 THEMIS -306814 sc-eQTL 7.01e-01 -0.0328 0.0853 0.244 NK_cytokine L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 1.24e-01 -0.156 0.1 0.267 PB L2
ENSG00000118518 RNF146 345207 sc-eQTL 3.01e-01 0.141 0.135 0.267 PB L2
ENSG00000152894 PTPRK -908857 sc-eQTL 2.70e-01 0.104 0.0936 0.267 PB L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 7.53e-02 0.143 0.08 0.241 Pro_T L2
ENSG00000118518 RNF146 345207 sc-eQTL 3.53e-01 0.0916 0.0983 0.241 Pro_T L2
ENSG00000172673 THEMIS -306814 sc-eQTL 8.47e-01 0.0133 0.0684 0.241 Pro_T L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 8.12e-01 0.0225 0.0945 0.244 Treg L2
ENSG00000118518 RNF146 345207 sc-eQTL 5.21e-01 -0.066 0.103 0.244 Treg L2
ENSG00000172673 THEMIS -306814 sc-eQTL 3.21e-01 -0.1 0.1 0.244 Treg L2
ENSG00000214338 SOGA3 92626 sc-eQTL 8.28e-01 0.0186 0.0855 0.244 Treg L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 5.51e-01 0.0595 0.0996 0.254 cDC L2
ENSG00000118518 RNF146 345207 sc-eQTL 3.96e-01 0.0936 0.11 0.254 cDC L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 4.42e-01 0.0497 0.0646 0.244 cMono_IL1B L2
ENSG00000118518 RNF146 345207 sc-eQTL 6.23e-01 0.0376 0.0764 0.244 cMono_IL1B L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 5.76e-01 -0.0425 0.076 0.244 cMono_S100A L2
ENSG00000118518 RNF146 345207 sc-eQTL 7.37e-01 0.0277 0.0825 0.244 cMono_S100A L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 2.91e-01 0.12 0.114 0.236 gdT L2
ENSG00000118518 RNF146 345207 sc-eQTL 7.00e-02 -0.208 0.114 0.236 gdT L2
ENSG00000172673 THEMIS -306814 sc-eQTL 4.00e-01 -0.0918 0.109 0.236 gdT L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 9.13e-01 -0.00948 0.087 0.24 intMono L2
ENSG00000118518 RNF146 345207 sc-eQTL 1.11e-01 0.146 0.0913 0.24 intMono L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 1.70e-01 -0.126 0.0914 0.238 ncMono L2
ENSG00000118518 RNF146 345207 sc-eQTL 4.20e-01 -0.0714 0.0884 0.238 ncMono L2
ENSG00000093144 ECHDC1 268208 sc-eQTL 3.22e-01 0.0914 0.0921 0.246 pDC L2
ENSG00000118518 RNF146 345207 sc-eQTL 2.59e-02 -0.26 0.115 0.246 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 268208 sc-eQTL 8.98e-01 0.00838 0.0651 0.244 B_Memory LOneK1K
ENSG00000118518 RNF146 345207 sc-eQTL 7.91e-01 -0.0248 0.0934 0.244 B_Memory LOneK1K
ENSG00000152894 PTPRK -908857 sc-eQTL 7.69e-01 0.025 0.0847 0.244 B_Memory LOneK1K
ENSG00000093144 ECHDC1 268208 sc-eQTL 6.92e-01 0.021 0.0531 0.244 B_Naive LOneK1K
ENSG00000118518 RNF146 345207 sc-eQTL 4.34e-02 -0.183 0.0901 0.244 B_Naive LOneK1K
ENSG00000152894 PTPRK -908857 sc-eQTL 2.25e-01 0.0808 0.0664 0.244 B_Naive LOneK1K
ENSG00000093144 ECHDC1 268208 sc-eQTL 8.93e-01 0.00799 0.0595 0.244 CD14_Mono LOneK1K
ENSG00000118518 RNF146 345207 sc-eQTL 3.64e-01 0.0643 0.0708 0.244 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 268208 sc-eQTL 2.63e-01 -0.0925 0.0824 0.239 CD16_Mono LOneK1K
ENSG00000118518 RNF146 345207 sc-eQTL 9.15e-01 0.00823 0.0771 0.239 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 268208 sc-eQTL 5.32e-01 -0.0466 0.0746 0.244 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 345207 sc-eQTL 3.78e-01 -0.0749 0.0847 0.244 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -306814 sc-eQTL 8.41e-01 -0.0184 0.0913 0.244 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 268208 eQTL 0.000348 0.0709 0.0198 0.0 0.0 0.233
ENSG00000146374 RSPO3 493146 pQTL 0.0297 0.0492 0.0226 0.00131 0.0 0.233
ENSG00000184530 C6orf58 92362 pQTL 0.0369 -0.0773 0.037 0.00119 0.0 0.233
ENSG00000189367 KIAA0408 152428 eQTL 0.00914 -0.117 0.0448 0.00243 0.00107 0.233

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000093144 ECHDC1 268208 1.31e-06 9.53e-07 2.59e-07 7.96e-07 3.5e-07 5.09e-07 1.49e-06 3.65e-07 1.49e-06 4.78e-07 1.75e-06 7e-07 2.02e-06 2.76e-07 5.58e-07 9.16e-07 9.26e-07 6.85e-07 8.2e-07 6.36e-07 7.16e-07 1.6e-06 8.53e-07 5.66e-07 2.09e-06 6.01e-07 9.34e-07 7.03e-07 1.37e-06 1.31e-06 7.03e-07 2.07e-07 2.57e-07 6.76e-07 5.82e-07 4.53e-07 5.04e-07 2.21e-07 4.2e-07 2.88e-07 3.03e-07 1.52e-06 1.22e-07 6.53e-08 2.98e-07 1.27e-07 2.19e-07 3.68e-08 1.98e-07