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Genes within 1Mb (chr6:127593477:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 249868 sc-eQTL 6.69e-01 -0.0208 0.0485 0.756 B L1
ENSG00000118518 RNF146 326867 sc-eQTL 3.82e-01 0.0677 0.0772 0.756 B L1
ENSG00000152894 PTPRK -927197 sc-eQTL 2.05e-01 -0.0743 0.0585 0.756 B L1
ENSG00000093144 ECHDC1 249868 sc-eQTL 9.41e-02 0.0982 0.0584 0.756 CD4T L1
ENSG00000118518 RNF146 326867 sc-eQTL 3.52e-01 0.0747 0.0801 0.756 CD4T L1
ENSG00000172673 THEMIS -325154 sc-eQTL 7.77e-01 0.0174 0.0612 0.756 CD4T L1
ENSG00000214338 SOGA3 74286 sc-eQTL 2.46e-01 -0.0603 0.0519 0.756 CD4T L1
ENSG00000093144 ECHDC1 249868 sc-eQTL 1.72e-01 0.0992 0.0724 0.756 CD8T L1
ENSG00000118518 RNF146 326867 sc-eQTL 4.29e-01 -0.0739 0.0934 0.756 CD8T L1
ENSG00000152894 PTPRK -927197 sc-eQTL 5.04e-01 -0.0339 0.0507 0.756 CD8T L1
ENSG00000172673 THEMIS -325154 sc-eQTL 8.07e-01 0.0178 0.0726 0.756 CD8T L1
ENSG00000227945 AL590006.1 -434409 sc-eQTL 6.41e-01 -0.0339 0.0726 0.756 CD8T L1
ENSG00000093144 ECHDC1 249868 sc-eQTL 2.01e-01 -0.107 0.0836 0.757 DC L1
ENSG00000118518 RNF146 326867 sc-eQTL 1.76e-01 0.139 0.102 0.757 DC L1
ENSG00000093144 ECHDC1 249868 sc-eQTL 9.96e-01 0.00027 0.057 0.756 Mono L1
ENSG00000118518 RNF146 326867 sc-eQTL 3.84e-01 -0.0551 0.0632 0.756 Mono L1
ENSG00000093144 ECHDC1 249868 sc-eQTL 5.87e-01 0.0385 0.0707 0.758 NK L1
ENSG00000118518 RNF146 326867 sc-eQTL 5.73e-01 0.0461 0.0817 0.758 NK L1
ENSG00000172673 THEMIS -325154 sc-eQTL 6.86e-01 0.0375 0.0925 0.758 NK L1
ENSG00000093144 ECHDC1 249868 sc-eQTL 2.81e-02 -0.142 0.0641 0.756 Other_T L1
ENSG00000118518 RNF146 326867 sc-eQTL 8.30e-01 0.02 0.0932 0.756 Other_T L1
ENSG00000172673 THEMIS -325154 sc-eQTL 8.17e-01 -0.0157 0.0677 0.756 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 249868 sc-eQTL 6.23e-01 -0.0565 0.115 0.773 B_Activated L2
ENSG00000118518 RNF146 326867 sc-eQTL 1.99e-01 -0.149 0.116 0.773 B_Activated L2
ENSG00000152894 PTPRK -927197 sc-eQTL 6.04e-01 -0.0553 0.106 0.773 B_Activated L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 8.22e-01 0.017 0.0753 0.755 B_Intermediate L2
ENSG00000118518 RNF146 326867 sc-eQTL 6.87e-01 -0.039 0.0967 0.755 B_Intermediate L2
ENSG00000152894 PTPRK -927197 sc-eQTL 8.76e-01 -0.0147 0.0945 0.755 B_Intermediate L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 7.30e-01 0.0298 0.0861 0.756 B_Memory L2
ENSG00000118518 RNF146 326867 sc-eQTL 3.18e-02 0.214 0.0991 0.756 B_Memory L2
ENSG00000152894 PTPRK -927197 sc-eQTL 3.42e-01 -0.0885 0.0929 0.756 B_Memory L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 7.45e-01 0.0189 0.058 0.756 B_Naive1 L2
ENSG00000118518 RNF146 326867 sc-eQTL 3.03e-01 0.0938 0.091 0.756 B_Naive1 L2
ENSG00000152894 PTPRK -927197 sc-eQTL 2.41e-01 -0.0862 0.0734 0.756 B_Naive1 L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 3.25e-01 -0.0734 0.0744 0.758 B_Naive2 L2
ENSG00000118518 RNF146 326867 sc-eQTL 6.59e-02 0.189 0.102 0.758 B_Naive2 L2
ENSG00000152894 PTPRK -927197 sc-eQTL 6.78e-01 -0.0342 0.0823 0.758 B_Naive2 L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 7.42e-01 0.0343 0.104 0.757 CD4_CTL L2
ENSG00000118518 RNF146 326867 sc-eQTL 5.60e-01 0.0593 0.102 0.757 CD4_CTL L2
ENSG00000172673 THEMIS -325154 sc-eQTL 1.12e-02 -0.173 0.0676 0.757 CD4_CTL L2
ENSG00000214338 SOGA3 74286 sc-eQTL 9.96e-01 0.000431 0.0918 0.757 CD4_CTL L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 4.98e-02 0.14 0.0709 0.756 CD4_Naive L2
ENSG00000118518 RNF146 326867 sc-eQTL 9.91e-01 0.000945 0.0855 0.756 CD4_Naive L2
ENSG00000172673 THEMIS -325154 sc-eQTL 4.19e-01 0.0497 0.0613 0.756 CD4_Naive L2
ENSG00000214338 SOGA3 74286 sc-eQTL 3.13e-01 -0.0589 0.0583 0.756 CD4_Naive L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 3.83e-01 0.0641 0.0733 0.756 CD4_TCM L2
ENSG00000118518 RNF146 326867 sc-eQTL 1.20e-01 0.148 0.0946 0.756 CD4_TCM L2
ENSG00000172673 THEMIS -325154 sc-eQTL 3.27e-01 0.0687 0.0699 0.756 CD4_TCM L2
ENSG00000214338 SOGA3 74286 sc-eQTL 4.50e-01 -0.0545 0.072 0.756 CD4_TCM L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 7.80e-01 0.0245 0.0876 0.756 CD4_TEM L2
ENSG00000118518 RNF146 326867 sc-eQTL 3.72e-01 0.0889 0.0994 0.756 CD4_TEM L2
ENSG00000172673 THEMIS -325154 sc-eQTL 5.09e-01 -0.0527 0.0796 0.756 CD4_TEM L2
ENSG00000214338 SOGA3 74286 sc-eQTL 9.77e-01 0.00238 0.0824 0.756 CD4_TEM L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 6.88e-01 0.0356 0.0887 0.756 CD8_CTL L2
ENSG00000118518 RNF146 326867 sc-eQTL 6.61e-01 -0.0462 0.105 0.756 CD8_CTL L2
ENSG00000152894 PTPRK -927197 sc-eQTL 1.76e-01 0.12 0.0884 0.756 CD8_CTL L2
ENSG00000172673 THEMIS -325154 sc-eQTL 4.51e-01 0.0573 0.0758 0.756 CD8_CTL L2
ENSG00000227945 AL590006.1 -434409 sc-eQTL 4.35e-01 0.0589 0.0753 0.756 CD8_CTL L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 5.93e-02 0.167 0.0882 0.756 CD8_Naive L2
ENSG00000118518 RNF146 326867 sc-eQTL 5.61e-01 -0.0554 0.0952 0.756 CD8_Naive L2
ENSG00000152894 PTPRK -927197 sc-eQTL 3.07e-01 -0.0714 0.0698 0.756 CD8_Naive L2
ENSG00000172673 THEMIS -325154 sc-eQTL 3.20e-01 0.0591 0.0592 0.756 CD8_Naive L2
ENSG00000227945 AL590006.1 -434409 sc-eQTL 2.80e-01 -0.0979 0.0903 0.756 CD8_Naive L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 5.80e-02 -0.178 0.0934 0.757 CD8_TCM L2
ENSG00000118518 RNF146 326867 sc-eQTL 9.13e-01 -0.012 0.109 0.757 CD8_TCM L2
ENSG00000152894 PTPRK -927197 sc-eQTL 3.51e-02 0.188 0.0884 0.757 CD8_TCM L2
ENSG00000172673 THEMIS -325154 sc-eQTL 8.20e-01 0.0217 0.0954 0.757 CD8_TCM L2
ENSG00000227945 AL590006.1 -434409 sc-eQTL 4.46e-01 0.0667 0.0874 0.757 CD8_TCM L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 6.23e-01 0.0495 0.1 0.76 CD8_TEM L2
ENSG00000118518 RNF146 326867 sc-eQTL 7.14e-01 0.0376 0.103 0.76 CD8_TEM L2
ENSG00000152894 PTPRK -927197 sc-eQTL 8.46e-01 0.0157 0.0807 0.76 CD8_TEM L2
ENSG00000172673 THEMIS -325154 sc-eQTL 4.30e-01 -0.0719 0.0909 0.76 CD8_TEM L2
ENSG00000227945 AL590006.1 -434409 sc-eQTL 1.37e-01 -0.116 0.0777 0.76 CD8_TEM L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 8.45e-01 0.0183 0.0935 0.762 MAIT L2
ENSG00000118518 RNF146 326867 sc-eQTL 9.67e-01 0.0041 0.099 0.762 MAIT L2
ENSG00000172673 THEMIS -325154 sc-eQTL 4.38e-01 -0.0613 0.0788 0.762 MAIT L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 9.72e-01 0.00349 0.101 0.753 NK_CD56bright L2
ENSG00000118518 RNF146 326867 sc-eQTL 6.32e-01 0.0504 0.105 0.753 NK_CD56bright L2
ENSG00000172673 THEMIS -325154 sc-eQTL 8.60e-01 -0.0135 0.0765 0.753 NK_CD56bright L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 1.77e-01 0.108 0.0794 0.756 NK_CD56dim L2
ENSG00000118518 RNF146 326867 sc-eQTL 2.84e-01 -0.0981 0.0912 0.756 NK_CD56dim L2
ENSG00000172673 THEMIS -325154 sc-eQTL 3.47e-01 -0.0852 0.0904 0.756 NK_CD56dim L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 9.45e-02 0.177 0.105 0.753 NK_HLA L2
ENSG00000118518 RNF146 326867 sc-eQTL 8.74e-01 0.0173 0.11 0.753 NK_HLA L2
ENSG00000172673 THEMIS -325154 sc-eQTL 3.74e-01 0.0759 0.0852 0.753 NK_HLA L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 2.69e-01 -0.0966 0.0872 0.756 NK_cytokine L2
ENSG00000118518 RNF146 326867 sc-eQTL 1.73e-02 0.214 0.089 0.756 NK_cytokine L2
ENSG00000172673 THEMIS -325154 sc-eQTL 7.01e-01 0.0328 0.0853 0.756 NK_cytokine L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 1.24e-01 0.156 0.1 0.733 PB L2
ENSG00000118518 RNF146 326867 sc-eQTL 3.01e-01 -0.141 0.135 0.733 PB L2
ENSG00000152894 PTPRK -927197 sc-eQTL 2.70e-01 -0.104 0.0936 0.733 PB L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 7.53e-02 -0.143 0.08 0.759 Pro_T L2
ENSG00000118518 RNF146 326867 sc-eQTL 3.53e-01 -0.0916 0.0983 0.759 Pro_T L2
ENSG00000172673 THEMIS -325154 sc-eQTL 8.47e-01 -0.0133 0.0684 0.759 Pro_T L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 8.12e-01 -0.0225 0.0945 0.756 Treg L2
ENSG00000118518 RNF146 326867 sc-eQTL 5.21e-01 0.066 0.103 0.756 Treg L2
ENSG00000172673 THEMIS -325154 sc-eQTL 3.21e-01 0.1 0.1 0.756 Treg L2
ENSG00000214338 SOGA3 74286 sc-eQTL 8.28e-01 -0.0186 0.0855 0.756 Treg L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 5.51e-01 -0.0595 0.0996 0.746 cDC L2
ENSG00000118518 RNF146 326867 sc-eQTL 3.96e-01 -0.0936 0.11 0.746 cDC L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 4.42e-01 -0.0497 0.0646 0.756 cMono_IL1B L2
ENSG00000118518 RNF146 326867 sc-eQTL 6.23e-01 -0.0376 0.0764 0.756 cMono_IL1B L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 5.76e-01 0.0425 0.076 0.756 cMono_S100A L2
ENSG00000118518 RNF146 326867 sc-eQTL 7.37e-01 -0.0277 0.0825 0.756 cMono_S100A L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 2.91e-01 -0.12 0.114 0.764 gdT L2
ENSG00000118518 RNF146 326867 sc-eQTL 7.00e-02 0.208 0.114 0.764 gdT L2
ENSG00000172673 THEMIS -325154 sc-eQTL 4.00e-01 0.0918 0.109 0.764 gdT L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 9.13e-01 0.00948 0.087 0.76 intMono L2
ENSG00000118518 RNF146 326867 sc-eQTL 1.11e-01 -0.146 0.0913 0.76 intMono L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 1.70e-01 0.126 0.0914 0.762 ncMono L2
ENSG00000118518 RNF146 326867 sc-eQTL 4.20e-01 0.0714 0.0884 0.762 ncMono L2
ENSG00000093144 ECHDC1 249868 sc-eQTL 3.22e-01 -0.0914 0.0921 0.754 pDC L2
ENSG00000118518 RNF146 326867 sc-eQTL 2.59e-02 0.26 0.115 0.754 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 249868 sc-eQTL 8.98e-01 -0.00838 0.0651 0.756 B_Memory LOneK1K
ENSG00000118518 RNF146 326867 sc-eQTL 7.91e-01 0.0248 0.0934 0.756 B_Memory LOneK1K
ENSG00000152894 PTPRK -927197 sc-eQTL 7.69e-01 -0.025 0.0847 0.756 B_Memory LOneK1K
ENSG00000093144 ECHDC1 249868 sc-eQTL 6.92e-01 -0.021 0.0531 0.756 B_Naive LOneK1K
ENSG00000118518 RNF146 326867 sc-eQTL 4.34e-02 0.183 0.0901 0.756 B_Naive LOneK1K
ENSG00000152894 PTPRK -927197 sc-eQTL 2.25e-01 -0.0808 0.0664 0.756 B_Naive LOneK1K
ENSG00000093144 ECHDC1 249868 sc-eQTL 8.93e-01 -0.00799 0.0595 0.756 CD14_Mono LOneK1K
ENSG00000118518 RNF146 326867 sc-eQTL 3.64e-01 -0.0643 0.0708 0.756 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 249868 sc-eQTL 2.63e-01 0.0925 0.0824 0.761 CD16_Mono LOneK1K
ENSG00000118518 RNF146 326867 sc-eQTL 9.15e-01 -0.00823 0.0771 0.761 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 249868 sc-eQTL 5.32e-01 0.0466 0.0746 0.756 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 326867 sc-eQTL 3.78e-01 0.0749 0.0847 0.756 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -325154 sc-eQTL 8.41e-01 0.0184 0.0913 0.756 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 249868 eQTL 0.000397 -0.0707 0.0199 0.0 0.0 0.235
ENSG00000146374 RSPO3 474806 pQTL 0.0363 -0.0478 0.0228 0.00116 0.0 0.234
ENSG00000184530 C6orf58 74022 pQTL 0.0403 0.0766 0.0373 0.00114 0.0 0.234
ENSG00000189367 KIAA0408 134088 eQTL 0.013 0.112 0.0451 0.00207 0.0 0.235

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000093144 ECHDC1 249868 1.86e-06 2.49e-06 3.1e-07 1.7e-06 4.82e-07 7.75e-07 1.61e-06 4.95e-07 1.75e-06 8.05e-07 1.99e-06 1.45e-06 3.49e-06 1.15e-06 5.01e-07 1.22e-06 1.1e-06 1.79e-06 8.1e-07 1.12e-06 9.48e-07 2.57e-06 2.16e-06 9.95e-07 3.36e-06 1.21e-06 1.15e-06 1.3e-06 1.8e-06 1.93e-06 1.23e-06 3.79e-07 4.47e-07 1.08e-06 9.1e-07 7.09e-07 7.47e-07 4.13e-07 1.11e-06 3.57e-07 2.88e-07 3.03e-06 4.6e-07 1.68e-07 3.57e-07 3.19e-07 4.27e-07 2.23e-07 2.3e-07