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Genes within 1Mb (chr6:127582076:G:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 238467 sc-eQTL 6.93e-01 0.0188 0.0474 0.274 B L1
ENSG00000118518 RNF146 315466 sc-eQTL 1.12e-01 -0.12 0.075 0.274 B L1
ENSG00000152894 PTPRK -938598 sc-eQTL 3.32e-01 0.0556 0.0571 0.274 B L1
ENSG00000093144 ECHDC1 238467 sc-eQTL 2.60e-01 -0.0654 0.058 0.274 CD4T L1
ENSG00000118518 RNF146 315466 sc-eQTL 2.65e-01 -0.0885 0.0791 0.274 CD4T L1
ENSG00000172673 THEMIS -336555 sc-eQTL 5.88e-01 -0.0329 0.0605 0.274 CD4T L1
ENSG00000214338 SOGA3 62885 sc-eQTL 3.21e-01 0.0512 0.0514 0.274 CD4T L1
ENSG00000093144 ECHDC1 238467 sc-eQTL 1.53e-01 -0.101 0.0705 0.274 CD8T L1
ENSG00000118518 RNF146 315466 sc-eQTL 3.88e-01 0.0785 0.0909 0.274 CD8T L1
ENSG00000152894 PTPRK -938598 sc-eQTL 5.34e-01 0.0308 0.0494 0.274 CD8T L1
ENSG00000172673 THEMIS -336555 sc-eQTL 8.10e-01 -0.017 0.0707 0.274 CD8T L1
ENSG00000227945 AL590006.1 -445810 sc-eQTL 9.92e-01 -0.000703 0.0707 0.274 CD8T L1
ENSG00000093144 ECHDC1 238467 sc-eQTL 6.42e-01 0.037 0.0795 0.273 DC L1
ENSG00000118518 RNF146 315466 sc-eQTL 1.97e-01 -0.125 0.0968 0.273 DC L1
ENSG00000093144 ECHDC1 238467 sc-eQTL 9.32e-01 0.00486 0.0569 0.274 Mono L1
ENSG00000118518 RNF146 315466 sc-eQTL 3.85e-01 0.0549 0.0631 0.274 Mono L1
ENSG00000093144 ECHDC1 238467 sc-eQTL 3.00e-01 -0.0732 0.0705 0.273 NK L1
ENSG00000118518 RNF146 315466 sc-eQTL 8.24e-01 -0.0182 0.0817 0.273 NK L1
ENSG00000172673 THEMIS -336555 sc-eQTL 8.69e-01 -0.0153 0.0925 0.273 NK L1
ENSG00000093144 ECHDC1 238467 sc-eQTL 2.52e-02 0.144 0.0638 0.274 Other_T L1
ENSG00000118518 RNF146 315466 sc-eQTL 7.99e-01 0.0237 0.0929 0.274 Other_T L1
ENSG00000172673 THEMIS -336555 sc-eQTL 5.79e-01 -0.0375 0.0674 0.274 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 238467 sc-eQTL 2.95e-02 0.237 0.108 0.263 B_Activated L2
ENSG00000118518 RNF146 315466 sc-eQTL 8.28e-01 0.0242 0.111 0.263 B_Activated L2
ENSG00000152894 PTPRK -938598 sc-eQTL 3.91e-01 -0.0872 0.102 0.263 B_Activated L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 5.28e-01 0.047 0.0743 0.275 B_Intermediate L2
ENSG00000118518 RNF146 315466 sc-eQTL 6.75e-01 0.0401 0.0954 0.275 B_Intermediate L2
ENSG00000152894 PTPRK -938598 sc-eQTL 3.33e-01 0.0903 0.093 0.275 B_Intermediate L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 6.01e-01 -0.0438 0.0837 0.272 B_Memory L2
ENSG00000118518 RNF146 315466 sc-eQTL 1.20e-02 -0.243 0.096 0.272 B_Memory L2
ENSG00000152894 PTPRK -938598 sc-eQTL 3.16e-01 0.0907 0.0902 0.272 B_Memory L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 5.84e-01 -0.0312 0.0569 0.274 B_Naive1 L2
ENSG00000118518 RNF146 315466 sc-eQTL 2.23e-01 -0.109 0.0893 0.274 B_Naive1 L2
ENSG00000152894 PTPRK -938598 sc-eQTL 1.75e-01 0.098 0.072 0.274 B_Naive1 L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 3.26e-01 0.0715 0.0726 0.273 B_Naive2 L2
ENSG00000118518 RNF146 315466 sc-eQTL 4.72e-02 -0.2 0.1 0.273 B_Naive2 L2
ENSG00000152894 PTPRK -938598 sc-eQTL 8.84e-01 -0.0117 0.0804 0.273 B_Naive2 L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 4.59e-01 0.0754 0.102 0.266 CD4_CTL L2
ENSG00000118518 RNF146 315466 sc-eQTL 7.43e-01 0.0328 0.0997 0.266 CD4_CTL L2
ENSG00000172673 THEMIS -336555 sc-eQTL 8.88e-02 0.114 0.0667 0.266 CD4_CTL L2
ENSG00000214338 SOGA3 62885 sc-eQTL 6.36e-01 -0.0426 0.0898 0.266 CD4_CTL L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 5.65e-01 -0.0408 0.0707 0.274 CD4_Naive L2
ENSG00000118518 RNF146 315466 sc-eQTL 9.78e-01 0.00235 0.0846 0.274 CD4_Naive L2
ENSG00000172673 THEMIS -336555 sc-eQTL 3.47e-01 -0.0571 0.0606 0.274 CD4_Naive L2
ENSG00000214338 SOGA3 62885 sc-eQTL 4.20e-01 0.0467 0.0577 0.274 CD4_Naive L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 2.08e-01 -0.0916 0.0726 0.274 CD4_TCM L2
ENSG00000118518 RNF146 315466 sc-eQTL 7.22e-02 -0.169 0.0937 0.274 CD4_TCM L2
ENSG00000172673 THEMIS -336555 sc-eQTL 8.44e-02 -0.12 0.0691 0.274 CD4_TCM L2
ENSG00000214338 SOGA3 62885 sc-eQTL 4.19e-01 0.0579 0.0715 0.274 CD4_TCM L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 3.12e-01 -0.0865 0.0853 0.274 CD4_TEM L2
ENSG00000118518 RNF146 315466 sc-eQTL 4.55e-01 -0.0727 0.0972 0.274 CD4_TEM L2
ENSG00000172673 THEMIS -336555 sc-eQTL 8.49e-01 0.0148 0.0778 0.274 CD4_TEM L2
ENSG00000214338 SOGA3 62885 sc-eQTL 9.07e-01 0.00939 0.0805 0.274 CD4_TEM L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 4.87e-01 -0.0609 0.0875 0.274 CD8_CTL L2
ENSG00000118518 RNF146 315466 sc-eQTL 8.84e-01 0.0151 0.104 0.274 CD8_CTL L2
ENSG00000152894 PTPRK -938598 sc-eQTL 2.39e-01 -0.103 0.0873 0.274 CD8_CTL L2
ENSG00000172673 THEMIS -336555 sc-eQTL 6.23e-01 -0.0369 0.0749 0.274 CD8_CTL L2
ENSG00000227945 AL590006.1 -445810 sc-eQTL 8.50e-01 0.0141 0.0744 0.274 CD8_CTL L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 3.56e-02 -0.184 0.087 0.274 CD8_Naive L2
ENSG00000118518 RNF146 315466 sc-eQTL 2.48e-01 0.109 0.0939 0.274 CD8_Naive L2
ENSG00000152894 PTPRK -938598 sc-eQTL 2.35e-01 0.0821 0.0689 0.274 CD8_Naive L2
ENSG00000172673 THEMIS -336555 sc-eQTL 1.55e-01 -0.0834 0.0584 0.274 CD8_Naive L2
ENSG00000227945 AL590006.1 -445810 sc-eQTL 6.41e-01 0.0418 0.0895 0.274 CD8_Naive L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 4.86e-01 0.0637 0.0913 0.273 CD8_TCM L2
ENSG00000118518 RNF146 315466 sc-eQTL 9.54e-01 -0.00618 0.106 0.273 CD8_TCM L2
ENSG00000152894 PTPRK -938598 sc-eQTL 7.37e-02 -0.155 0.086 0.273 CD8_TCM L2
ENSG00000172673 THEMIS -336555 sc-eQTL 9.37e-01 0.00735 0.0925 0.273 CD8_TCM L2
ENSG00000227945 AL590006.1 -445810 sc-eQTL 9.64e-01 -0.0038 0.0848 0.273 CD8_TCM L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 6.78e-01 0.0419 0.101 0.272 CD8_TEM L2
ENSG00000118518 RNF146 315466 sc-eQTL 7.37e-01 -0.0346 0.103 0.272 CD8_TEM L2
ENSG00000152894 PTPRK -938598 sc-eQTL 5.49e-01 -0.0485 0.0808 0.272 CD8_TEM L2
ENSG00000172673 THEMIS -336555 sc-eQTL 1.34e-01 0.136 0.0907 0.272 CD8_TEM L2
ENSG00000227945 AL590006.1 -445810 sc-eQTL 5.07e-01 0.052 0.0782 0.272 CD8_TEM L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 9.68e-01 0.00368 0.0915 0.268 MAIT L2
ENSG00000118518 RNF146 315466 sc-eQTL 4.50e-01 0.0732 0.0968 0.268 MAIT L2
ENSG00000172673 THEMIS -336555 sc-eQTL 9.31e-01 -0.00673 0.0773 0.268 MAIT L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 8.77e-01 -0.0155 0.0998 0.273 NK_CD56bright L2
ENSG00000118518 RNF146 315466 sc-eQTL 5.81e-01 0.0578 0.104 0.273 NK_CD56bright L2
ENSG00000172673 THEMIS -336555 sc-eQTL 6.24e-01 -0.0372 0.0759 0.273 NK_CD56bright L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 1.13e-01 -0.127 0.0798 0.274 NK_CD56dim L2
ENSG00000118518 RNF146 315466 sc-eQTL 2.88e-01 0.0978 0.0918 0.274 NK_CD56dim L2
ENSG00000172673 THEMIS -336555 sc-eQTL 8.33e-01 -0.0193 0.0911 0.274 NK_CD56dim L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 6.85e-02 -0.192 0.105 0.276 NK_HLA L2
ENSG00000118518 RNF146 315466 sc-eQTL 8.18e-01 -0.0252 0.109 0.276 NK_HLA L2
ENSG00000172673 THEMIS -336555 sc-eQTL 9.58e-01 -0.00445 0.085 0.276 NK_HLA L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 9.70e-01 0.00323 0.087 0.274 NK_cytokine L2
ENSG00000118518 RNF146 315466 sc-eQTL 1.60e-03 -0.28 0.0877 0.274 NK_cytokine L2
ENSG00000172673 THEMIS -336555 sc-eQTL 7.88e-01 0.0229 0.0849 0.274 NK_cytokine L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 4.71e-02 -0.2 0.0994 0.296 PB L2
ENSG00000118518 RNF146 315466 sc-eQTL 1.20e-01 0.21 0.134 0.296 PB L2
ENSG00000152894 PTPRK -938598 sc-eQTL 1.92e-01 0.122 0.0931 0.296 PB L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 5.22e-02 0.155 0.0795 0.27 Pro_T L2
ENSG00000118518 RNF146 315466 sc-eQTL 8.15e-02 0.17 0.0974 0.27 Pro_T L2
ENSG00000172673 THEMIS -336555 sc-eQTL 9.10e-01 0.00773 0.0681 0.27 Pro_T L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 3.90e-01 -0.0808 0.0939 0.274 Treg L2
ENSG00000118518 RNF146 315466 sc-eQTL 8.28e-01 -0.0222 0.102 0.274 Treg L2
ENSG00000172673 THEMIS -336555 sc-eQTL 7.53e-01 -0.0316 0.1 0.274 Treg L2
ENSG00000214338 SOGA3 62885 sc-eQTL 5.35e-01 -0.0529 0.085 0.274 Treg L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 6.06e-01 0.0486 0.0942 0.285 cDC L2
ENSG00000118518 RNF146 315466 sc-eQTL 8.75e-01 -0.0164 0.104 0.285 cDC L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 3.16e-01 0.0641 0.0637 0.274 cMono_IL1B L2
ENSG00000118518 RNF146 315466 sc-eQTL 5.67e-01 0.0433 0.0754 0.274 cMono_IL1B L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 9.36e-01 -0.00605 0.0748 0.274 cMono_S100A L2
ENSG00000118518 RNF146 315466 sc-eQTL 7.74e-01 0.0233 0.0811 0.274 cMono_S100A L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 1.04e-01 0.179 0.109 0.264 gdT L2
ENSG00000118518 RNF146 315466 sc-eQTL 3.19e-01 -0.111 0.111 0.264 gdT L2
ENSG00000172673 THEMIS -336555 sc-eQTL 2.25e-01 -0.128 0.105 0.264 gdT L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 9.63e-01 0.00396 0.0846 0.273 intMono L2
ENSG00000118518 RNF146 315466 sc-eQTL 2.08e-01 0.112 0.0889 0.273 intMono L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 2.34e-02 -0.2 0.0877 0.269 ncMono L2
ENSG00000118518 RNF146 315466 sc-eQTL 1.52e-01 -0.123 0.0852 0.269 ncMono L2
ENSG00000093144 ECHDC1 238467 sc-eQTL 8.52e-01 -0.0166 0.0886 0.277 pDC L2
ENSG00000118518 RNF146 315466 sc-eQTL 2.95e-02 -0.243 0.111 0.277 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 238467 sc-eQTL 4.78e-01 0.0453 0.0637 0.274 B_Memory LOneK1K
ENSG00000118518 RNF146 315466 sc-eQTL 1.96e-01 -0.118 0.0911 0.274 B_Memory LOneK1K
ENSG00000152894 PTPRK -938598 sc-eQTL 2.38e-01 0.0979 0.0828 0.274 B_Memory LOneK1K
ENSG00000093144 ECHDC1 238467 sc-eQTL 7.34e-01 0.0176 0.0518 0.274 B_Naive LOneK1K
ENSG00000118518 RNF146 315466 sc-eQTL 2.05e-02 -0.205 0.0878 0.274 B_Naive LOneK1K
ENSG00000152894 PTPRK -938598 sc-eQTL 2.08e-01 0.0819 0.0649 0.274 B_Naive LOneK1K
ENSG00000093144 ECHDC1 238467 sc-eQTL 4.74e-01 0.0419 0.0584 0.274 CD14_Mono LOneK1K
ENSG00000118518 RNF146 315466 sc-eQTL 3.33e-01 0.0674 0.0695 0.274 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 238467 sc-eQTL 5.90e-02 -0.151 0.0797 0.272 CD16_Mono LOneK1K
ENSG00000118518 RNF146 315466 sc-eQTL 4.99e-01 -0.0508 0.075 0.272 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 238467 sc-eQTL 4.11e-01 -0.0618 0.075 0.274 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 315466 sc-eQTL 4.04e-01 -0.0713 0.0853 0.274 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -336555 sc-eQTL 9.20e-01 0.00919 0.0919 0.274 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 238467 eQTL 5.23e-05 0.0752 0.0185 0.0 0.0 0.273
ENSG00000184530 C6orf58 62621 pQTL 0.0396 -0.0721 0.035 0.00121 0.0 0.275
ENSG00000189367 KIAA0408 122687 eQTL 0.0114 -0.107 0.042 0.0024 0.0 0.273
ENSG00000217325 PRELID1P1 938588 eQTL 0.0176 0.106 0.0446 0.0 0.0 0.273

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000217325 PRELID1P1 938588 2.64e-07 1.11e-07 3.62e-08 1.82e-07 8.92e-08 9.71e-08 1.38e-07 5.49e-08 1.41e-07 4.38e-08 1.6e-07 7.75e-08 1.3e-07 6.38e-08 5.55e-08 7.5e-08 4.48e-08 1.14e-07 5.19e-08 4.2e-08 1.04e-07 1.28e-07 1.26e-07 4.13e-08 1.33e-07 1.19e-07 1.12e-07 8.71e-08 1.03e-07 1.12e-07 9.58e-08 3.96e-08 2.92e-08 8.65e-08 8.98e-08 3.97e-08 5.03e-08 9.65e-08 7.52e-08 3.18e-08 3.92e-08 1.37e-07 4.04e-08 2.71e-08 6.92e-08 1.67e-08 1.26e-07 3.99e-09 4.91e-08