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Genes within 1Mb (chr6:127577160:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 233551 sc-eQTL 7.50e-01 0.0244 0.0763 0.921 B L1
ENSG00000118518 RNF146 310550 sc-eQTL 1.68e-01 -0.167 0.121 0.921 B L1
ENSG00000152894 PTPRK -943514 sc-eQTL 9.77e-01 0.00263 0.0922 0.921 B L1
ENSG00000093144 ECHDC1 233551 sc-eQTL 4.66e-02 -0.187 0.0935 0.921 CD4T L1
ENSG00000118518 RNF146 310550 sc-eQTL 5.46e-02 -0.247 0.128 0.921 CD4T L1
ENSG00000172673 THEMIS -341471 sc-eQTL 8.58e-01 -0.0176 0.0984 0.921 CD4T L1
ENSG00000214338 SOGA3 57969 sc-eQTL 2.44e-01 0.0975 0.0834 0.921 CD4T L1
ENSG00000093144 ECHDC1 233551 sc-eQTL 6.02e-01 0.0591 0.113 0.921 CD8T L1
ENSG00000118518 RNF146 310550 sc-eQTL 9.99e-01 -0.000123 0.146 0.921 CD8T L1
ENSG00000152894 PTPRK -943514 sc-eQTL 5.42e-01 -0.0482 0.0789 0.921 CD8T L1
ENSG00000172673 THEMIS -341471 sc-eQTL 6.69e-01 -0.0484 0.113 0.921 CD8T L1
ENSG00000227945 AL590006.1 -450726 sc-eQTL 7.40e-01 0.0376 0.113 0.921 CD8T L1
ENSG00000093144 ECHDC1 233551 sc-eQTL 2.69e-01 0.139 0.125 0.921 DC L1
ENSG00000118518 RNF146 310550 sc-eQTL 7.73e-02 -0.271 0.152 0.921 DC L1
ENSG00000093144 ECHDC1 233551 sc-eQTL 4.72e-01 0.065 0.0902 0.921 Mono L1
ENSG00000118518 RNF146 310550 sc-eQTL 8.60e-01 -0.0177 0.1 0.921 Mono L1
ENSG00000093144 ECHDC1 233551 sc-eQTL 1.99e-01 -0.143 0.111 0.921 NK L1
ENSG00000118518 RNF146 310550 sc-eQTL 2.10e-01 -0.161 0.128 0.921 NK L1
ENSG00000172673 THEMIS -341471 sc-eQTL 1.40e-01 -0.215 0.145 0.921 NK L1
ENSG00000093144 ECHDC1 233551 sc-eQTL 4.62e-01 -0.0755 0.102 0.921 Other_T L1
ENSG00000118518 RNF146 310550 sc-eQTL 3.48e-01 -0.138 0.147 0.921 Other_T L1
ENSG00000172673 THEMIS -341471 sc-eQTL 6.85e-01 0.0435 0.107 0.921 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 233551 sc-eQTL 4.33e-01 0.134 0.171 0.918 B_Activated L2
ENSG00000118518 RNF146 310550 sc-eQTL 3.38e-01 -0.166 0.173 0.918 B_Activated L2
ENSG00000152894 PTPRK -943514 sc-eQTL 5.40e-01 -0.0974 0.159 0.918 B_Activated L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 9.23e-01 -0.0117 0.12 0.921 B_Intermediate L2
ENSG00000118518 RNF146 310550 sc-eQTL 9.17e-01 -0.0161 0.154 0.921 B_Intermediate L2
ENSG00000152894 PTPRK -943514 sc-eQTL 7.29e-01 0.0523 0.151 0.921 B_Intermediate L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 9.04e-01 -0.0165 0.136 0.92 B_Memory L2
ENSG00000118518 RNF146 310550 sc-eQTL 8.83e-01 -0.0232 0.158 0.92 B_Memory L2
ENSG00000152894 PTPRK -943514 sc-eQTL 1.15e-01 0.232 0.146 0.92 B_Memory L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 3.92e-01 0.0776 0.0904 0.921 B_Naive1 L2
ENSG00000118518 RNF146 310550 sc-eQTL 5.82e-02 -0.269 0.141 0.921 B_Naive1 L2
ENSG00000152894 PTPRK -943514 sc-eQTL 8.57e-01 0.0207 0.115 0.921 B_Naive1 L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 6.47e-01 0.0537 0.117 0.921 B_Naive2 L2
ENSG00000118518 RNF146 310550 sc-eQTL 5.18e-01 -0.105 0.162 0.921 B_Naive2 L2
ENSG00000152894 PTPRK -943514 sc-eQTL 1.75e-01 -0.175 0.129 0.921 B_Naive2 L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 6.09e-01 -0.0853 0.166 0.923 CD4_CTL L2
ENSG00000118518 RNF146 310550 sc-eQTL 3.36e-01 0.157 0.163 0.923 CD4_CTL L2
ENSG00000172673 THEMIS -341471 sc-eQTL 4.29e-01 -0.0871 0.11 0.923 CD4_CTL L2
ENSG00000214338 SOGA3 57969 sc-eQTL 1.96e-01 0.19 0.146 0.923 CD4_CTL L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 2.79e-01 -0.127 0.117 0.921 CD4_Naive L2
ENSG00000118518 RNF146 310550 sc-eQTL 2.49e-01 -0.162 0.14 0.921 CD4_Naive L2
ENSG00000172673 THEMIS -341471 sc-eQTL 7.83e-01 -0.0277 0.101 0.921 CD4_Naive L2
ENSG00000214338 SOGA3 57969 sc-eQTL 4.32e-01 0.0752 0.0956 0.921 CD4_Naive L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 2.81e-01 -0.129 0.119 0.921 CD4_TCM L2
ENSG00000118518 RNF146 310550 sc-eQTL 2.73e-02 -0.34 0.153 0.921 CD4_TCM L2
ENSG00000172673 THEMIS -341471 sc-eQTL 1.10e-01 -0.182 0.113 0.921 CD4_TCM L2
ENSG00000214338 SOGA3 57969 sc-eQTL 6.63e-01 0.0512 0.117 0.921 CD4_TCM L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 3.85e-01 -0.123 0.142 0.921 CD4_TEM L2
ENSG00000118518 RNF146 310550 sc-eQTL 4.32e-01 -0.127 0.161 0.921 CD4_TEM L2
ENSG00000172673 THEMIS -341471 sc-eQTL 5.68e-01 -0.0738 0.129 0.921 CD4_TEM L2
ENSG00000214338 SOGA3 57969 sc-eQTL 6.37e-01 0.0631 0.134 0.921 CD4_TEM L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 1.18e-01 0.218 0.139 0.921 CD8_CTL L2
ENSG00000118518 RNF146 310550 sc-eQTL 5.83e-01 -0.0907 0.165 0.921 CD8_CTL L2
ENSG00000152894 PTPRK -943514 sc-eQTL 6.72e-01 0.0591 0.139 0.921 CD8_CTL L2
ENSG00000172673 THEMIS -341471 sc-eQTL 3.99e-01 0.101 0.119 0.921 CD8_CTL L2
ENSG00000227945 AL590006.1 -450726 sc-eQTL 3.56e-01 0.109 0.118 0.921 CD8_CTL L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 7.40e-01 -0.0499 0.15 0.921 CD8_Naive L2
ENSG00000118518 RNF146 310550 sc-eQTL 7.67e-01 -0.0478 0.161 0.921 CD8_Naive L2
ENSG00000152894 PTPRK -943514 sc-eQTL 4.49e-01 -0.0895 0.118 0.921 CD8_Naive L2
ENSG00000172673 THEMIS -341471 sc-eQTL 2.52e-01 -0.115 0.1 0.921 CD8_Naive L2
ENSG00000227945 AL590006.1 -450726 sc-eQTL 9.46e-01 0.0104 0.153 0.921 CD8_Naive L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 8.17e-01 -0.0358 0.155 0.921 CD8_TCM L2
ENSG00000118518 RNF146 310550 sc-eQTL 5.48e-01 -0.108 0.179 0.921 CD8_TCM L2
ENSG00000152894 PTPRK -943514 sc-eQTL 7.22e-01 -0.0523 0.147 0.921 CD8_TCM L2
ENSG00000172673 THEMIS -341471 sc-eQTL 6.66e-01 -0.0677 0.156 0.921 CD8_TCM L2
ENSG00000227945 AL590006.1 -450726 sc-eQTL 9.56e-01 -0.00794 0.144 0.921 CD8_TCM L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 6.78e-01 -0.0647 0.156 0.922 CD8_TEM L2
ENSG00000118518 RNF146 310550 sc-eQTL 2.38e-01 0.187 0.158 0.922 CD8_TEM L2
ENSG00000152894 PTPRK -943514 sc-eQTL 7.53e-01 0.0394 0.125 0.922 CD8_TEM L2
ENSG00000172673 THEMIS -341471 sc-eQTL 6.79e-01 0.0584 0.141 0.922 CD8_TEM L2
ENSG00000227945 AL590006.1 -450726 sc-eQTL 6.26e-01 0.059 0.121 0.922 CD8_TEM L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 6.18e-01 -0.075 0.15 0.922 MAIT L2
ENSG00000118518 RNF146 310550 sc-eQTL 6.31e-01 -0.0766 0.159 0.922 MAIT L2
ENSG00000172673 THEMIS -341471 sc-eQTL 3.13e-01 0.128 0.127 0.922 MAIT L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 7.78e-01 0.0442 0.157 0.92 NK_CD56bright L2
ENSG00000118518 RNF146 310550 sc-eQTL 7.64e-01 0.0493 0.164 0.92 NK_CD56bright L2
ENSG00000172673 THEMIS -341471 sc-eQTL 5.38e-02 -0.23 0.118 0.92 NK_CD56bright L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 1.93e-01 -0.164 0.125 0.92 NK_CD56dim L2
ENSG00000118518 RNF146 310550 sc-eQTL 4.38e-01 -0.112 0.144 0.92 NK_CD56dim L2
ENSG00000172673 THEMIS -341471 sc-eQTL 7.50e-01 -0.0456 0.143 0.92 NK_CD56dim L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 1.59e-01 -0.222 0.157 0.918 NK_HLA L2
ENSG00000118518 RNF146 310550 sc-eQTL 8.58e-01 -0.0291 0.163 0.918 NK_HLA L2
ENSG00000172673 THEMIS -341471 sc-eQTL 7.51e-01 -0.0403 0.127 0.918 NK_HLA L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 6.05e-01 0.0717 0.138 0.92 NK_cytokine L2
ENSG00000118518 RNF146 310550 sc-eQTL 3.01e-02 -0.308 0.141 0.92 NK_cytokine L2
ENSG00000172673 THEMIS -341471 sc-eQTL 1.53e-01 -0.193 0.134 0.92 NK_cytokine L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 5.31e-01 0.111 0.176 0.941 PB L2
ENSG00000118518 RNF146 310550 sc-eQTL 8.66e-01 0.0398 0.236 0.941 PB L2
ENSG00000152894 PTPRK -943514 sc-eQTL 2.47e-01 -0.189 0.162 0.941 PB L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 1.58e-01 -0.173 0.122 0.92 Pro_T L2
ENSG00000118518 RNF146 310550 sc-eQTL 9.20e-01 -0.015 0.15 0.92 Pro_T L2
ENSG00000172673 THEMIS -341471 sc-eQTL 7.68e-01 -0.0307 0.104 0.92 Pro_T L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 4.23e-01 -0.121 0.15 0.921 Treg L2
ENSG00000118518 RNF146 310550 sc-eQTL 2.87e-02 -0.356 0.161 0.921 Treg L2
ENSG00000172673 THEMIS -341471 sc-eQTL 7.34e-01 0.0544 0.16 0.921 Treg L2
ENSG00000214338 SOGA3 57969 sc-eQTL 1.72e-02 0.322 0.134 0.921 Treg L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 8.64e-01 0.0265 0.155 0.917 cDC L2
ENSG00000118518 RNF146 310550 sc-eQTL 2.13e-03 -0.521 0.167 0.917 cDC L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 1.85e-01 0.136 0.102 0.921 cMono_IL1B L2
ENSG00000118518 RNF146 310550 sc-eQTL 9.06e-01 0.0143 0.121 0.921 cMono_IL1B L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 6.01e-01 -0.0638 0.122 0.921 cMono_S100A L2
ENSG00000118518 RNF146 310550 sc-eQTL 6.80e-01 0.0544 0.132 0.921 cMono_S100A L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 9.50e-01 0.0113 0.18 0.915 gdT L2
ENSG00000118518 RNF146 310550 sc-eQTL 8.30e-02 -0.315 0.18 0.915 gdT L2
ENSG00000172673 THEMIS -341471 sc-eQTL 6.81e-02 -0.312 0.17 0.915 gdT L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 6.70e-01 0.058 0.136 0.92 intMono L2
ENSG00000118518 RNF146 310550 sc-eQTL 2.37e-01 -0.17 0.143 0.92 intMono L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 5.67e-01 -0.0808 0.141 0.921 ncMono L2
ENSG00000118518 RNF146 310550 sc-eQTL 6.79e-01 -0.0563 0.136 0.921 ncMono L2
ENSG00000093144 ECHDC1 233551 sc-eQTL 8.96e-01 -0.0192 0.147 0.924 pDC L2
ENSG00000118518 RNF146 310550 sc-eQTL 3.79e-01 -0.164 0.186 0.924 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 233551 sc-eQTL 7.13e-01 -0.0384 0.104 0.921 B_Memory LOneK1K
ENSG00000118518 RNF146 310550 sc-eQTL 9.15e-01 -0.0159 0.15 0.921 B_Memory LOneK1K
ENSG00000152894 PTPRK -943514 sc-eQTL 4.70e-01 0.0983 0.136 0.921 B_Memory LOneK1K
ENSG00000093144 ECHDC1 233551 sc-eQTL 3.05e-01 0.0856 0.0832 0.921 B_Naive LOneK1K
ENSG00000118518 RNF146 310550 sc-eQTL 2.36e-02 -0.322 0.141 0.921 B_Naive LOneK1K
ENSG00000152894 PTPRK -943514 sc-eQTL 8.06e-01 -0.0257 0.105 0.921 B_Naive LOneK1K
ENSG00000093144 ECHDC1 233551 sc-eQTL 5.65e-01 0.0539 0.0935 0.921 CD14_Mono LOneK1K
ENSG00000118518 RNF146 310550 sc-eQTL 8.55e-01 0.0204 0.112 0.921 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 233551 sc-eQTL 7.29e-01 -0.0444 0.128 0.92 CD16_Mono LOneK1K
ENSG00000118518 RNF146 310550 sc-eQTL 1.97e-01 -0.154 0.119 0.92 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 233551 sc-eQTL 4.68e-01 -0.0856 0.118 0.92 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 310550 sc-eQTL 1.53e-01 -0.191 0.133 0.92 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -341471 sc-eQTL 1.14e-01 -0.228 0.143 0.92 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000172673 THEMIS -341471 eQTL 0.0134 -0.0641 0.0259 0.00168 0.0 0.0898
ENSG00000214338 SOGA3 57969 eQTL 0.00111 0.168 0.0513 0.00397 0.00233 0.0898

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000172673 THEMIS -341471 7.74e-07 3.55e-07 3.43e-07 3.43e-07 9.93e-08 1.26e-07 6.18e-07 6.2e-08 3.17e-07 1.6e-07 1.1e-06 3.61e-07 7.93e-07 1.72e-07 3.13e-07 1.76e-07 3.75e-07 4.24e-07 9.97e-08 7.83e-08 1.92e-07 3.8e-07 4.01e-07 5.01e-08 8.33e-07 1.65e-07 1.78e-07 2.69e-07 2.98e-07 7.92e-07 1.95e-07 3.64e-08 4.27e-08 3.66e-07 3.04e-07 1.19e-07 9.11e-08 6.78e-08 4.72e-08 7.17e-08 5.28e-08 3.06e-07 2.33e-07 1.99e-08 1.08e-07 2.64e-08 9.1e-08 0.0 4.94e-08
ENSG00000214338 SOGA3 57969 1.73e-05 1.48e-05 6.44e-06 1.21e-05 2.47e-06 6.86e-06 2.08e-05 2.14e-06 1.53e-05 7.65e-06 1.78e-05 7.65e-06 2.49e-05 6.39e-06 5.19e-06 8.93e-06 1.17e-05 1.35e-05 3.47e-06 3.14e-06 8.13e-06 1.45e-05 1.78e-05 5.19e-06 2.73e-05 5.73e-06 7.34e-06 5.53e-06 1.77e-05 1.49e-05 1.05e-05 1.23e-06 1.44e-06 4.26e-06 8.54e-06 3.76e-06 2.15e-06 2.9e-06 2.2e-06 1.01e-06 1.34e-06 2.31e-05 2.71e-06 4.21e-07 1.97e-06 2.61e-06 2.56e-06 1.31e-06 1.01e-06