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Genes within 1Mb (chr6:127549649:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 206040 sc-eQTL 8.00e-01 0.0113 0.0446 0.63 B L1
ENSG00000118518 RNF146 283039 sc-eQTL 4.00e-01 0.0598 0.0709 0.63 B L1
ENSG00000152894 PTPRK -971025 sc-eQTL 1.50e-01 -0.0775 0.0536 0.63 B L1
ENSG00000093144 ECHDC1 206040 sc-eQTL 4.99e-01 -0.0371 0.0548 0.63 CD4T L1
ENSG00000118518 RNF146 283039 sc-eQTL 1.18e-01 0.117 0.0744 0.63 CD4T L1
ENSG00000172673 THEMIS -368982 sc-eQTL 4.71e-01 -0.0412 0.0571 0.63 CD4T L1
ENSG00000214338 SOGA3 30458 sc-eQTL 1.29e-01 0.0736 0.0483 0.63 CD4T L1
ENSG00000093144 ECHDC1 206040 sc-eQTL 5.58e-01 0.0391 0.0667 0.63 CD8T L1
ENSG00000118518 RNF146 283039 sc-eQTL 4.27e-01 -0.0682 0.0857 0.63 CD8T L1
ENSG00000152894 PTPRK -971025 sc-eQTL 4.14e-01 -0.0381 0.0465 0.63 CD8T L1
ENSG00000172673 THEMIS -368982 sc-eQTL 2.32e-01 0.0796 0.0664 0.63 CD8T L1
ENSG00000227945 AL590006.1 -478237 sc-eQTL 7.02e-01 0.0255 0.0667 0.63 CD8T L1
ENSG00000093144 ECHDC1 206040 sc-eQTL 3.75e-01 -0.0646 0.0727 0.635 DC L1
ENSG00000118518 RNF146 283039 sc-eQTL 8.08e-01 -0.0217 0.0889 0.635 DC L1
ENSG00000093144 ECHDC1 206040 sc-eQTL 7.89e-01 0.0142 0.0532 0.63 Mono L1
ENSG00000118518 RNF146 283039 sc-eQTL 6.70e-01 -0.0252 0.0591 0.63 Mono L1
ENSG00000093144 ECHDC1 206040 sc-eQTL 1.12e-01 0.103 0.0644 0.631 NK L1
ENSG00000118518 RNF146 283039 sc-eQTL 9.41e-01 0.00555 0.0749 0.631 NK L1
ENSG00000172673 THEMIS -368982 sc-eQTL 6.11e-01 -0.0432 0.0848 0.631 NK L1
ENSG00000093144 ECHDC1 206040 sc-eQTL 2.19e-01 -0.0742 0.0602 0.63 Other_T L1
ENSG00000118518 RNF146 283039 sc-eQTL 8.62e-01 -0.0152 0.0868 0.63 Other_T L1
ENSG00000172673 THEMIS -368982 sc-eQTL 4.63e-01 0.0463 0.063 0.63 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 206040 sc-eQTL 5.26e-01 0.0652 0.103 0.635 B_Activated L2
ENSG00000118518 RNF146 283039 sc-eQTL 6.28e-01 -0.0505 0.104 0.635 B_Activated L2
ENSG00000152894 PTPRK -971025 sc-eQTL 5.61e-01 -0.0556 0.0953 0.635 B_Activated L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 6.75e-01 -0.0294 0.07 0.629 B_Intermediate L2
ENSG00000118518 RNF146 283039 sc-eQTL 9.03e-02 -0.152 0.0893 0.629 B_Intermediate L2
ENSG00000152894 PTPRK -971025 sc-eQTL 3.22e-01 -0.087 0.0876 0.629 B_Intermediate L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 7.57e-01 0.0247 0.0797 0.631 B_Memory L2
ENSG00000118518 RNF146 283039 sc-eQTL 6.66e-02 0.17 0.092 0.631 B_Memory L2
ENSG00000152894 PTPRK -971025 sc-eQTL 6.06e-01 0.0444 0.086 0.631 B_Memory L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 3.79e-01 0.0469 0.0532 0.63 B_Naive1 L2
ENSG00000118518 RNF146 283039 sc-eQTL 4.77e-01 0.0596 0.0837 0.63 B_Naive1 L2
ENSG00000152894 PTPRK -971025 sc-eQTL 4.79e-01 -0.0479 0.0676 0.63 B_Naive1 L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 4.13e-01 0.0559 0.0683 0.631 B_Naive2 L2
ENSG00000118518 RNF146 283039 sc-eQTL 1.88e-01 0.125 0.0944 0.631 B_Naive2 L2
ENSG00000152894 PTPRK -971025 sc-eQTL 1.85e-02 -0.177 0.0745 0.631 B_Naive2 L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 3.63e-02 -0.203 0.0963 0.636 CD4_CTL L2
ENSG00000118518 RNF146 283039 sc-eQTL 1.63e-01 0.133 0.0949 0.636 CD4_CTL L2
ENSG00000172673 THEMIS -368982 sc-eQTL 5.84e-02 -0.121 0.0637 0.636 CD4_CTL L2
ENSG00000214338 SOGA3 30458 sc-eQTL 9.15e-01 0.00923 0.086 0.636 CD4_CTL L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 5.25e-01 -0.0427 0.0671 0.63 CD4_Naive L2
ENSG00000118518 RNF146 283039 sc-eQTL 1.56e-01 0.114 0.0799 0.63 CD4_Naive L2
ENSG00000172673 THEMIS -368982 sc-eQTL 3.66e-01 -0.0521 0.0575 0.63 CD4_Naive L2
ENSG00000214338 SOGA3 30458 sc-eQTL 1.68e-01 0.0756 0.0546 0.63 CD4_Naive L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 6.24e-01 0.034 0.0692 0.63 CD4_TCM L2
ENSG00000118518 RNF146 283039 sc-eQTL 8.02e-02 0.157 0.0891 0.63 CD4_TCM L2
ENSG00000172673 THEMIS -368982 sc-eQTL 9.33e-01 0.00557 0.0662 0.63 CD4_TCM L2
ENSG00000214338 SOGA3 30458 sc-eQTL 6.82e-01 0.0279 0.068 0.63 CD4_TCM L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 4.03e-01 0.0679 0.081 0.63 CD4_TEM L2
ENSG00000118518 RNF146 283039 sc-eQTL 6.34e-02 -0.171 0.0916 0.63 CD4_TEM L2
ENSG00000172673 THEMIS -368982 sc-eQTL 4.68e-01 0.0536 0.0738 0.63 CD4_TEM L2
ENSG00000214338 SOGA3 30458 sc-eQTL 2.41e-02 0.172 0.0755 0.63 CD4_TEM L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 2.57e-01 0.0919 0.0808 0.63 CD8_CTL L2
ENSG00000118518 RNF146 283039 sc-eQTL 1.49e-01 -0.138 0.0955 0.63 CD8_CTL L2
ENSG00000152894 PTPRK -971025 sc-eQTL 7.38e-01 -0.0272 0.081 0.63 CD8_CTL L2
ENSG00000172673 THEMIS -368982 sc-eQTL 2.82e-01 0.0747 0.0692 0.63 CD8_CTL L2
ENSG00000227945 AL590006.1 -478237 sc-eQTL 5.48e-01 -0.0414 0.0688 0.63 CD8_CTL L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 1.34e-01 0.125 0.0834 0.63 CD8_Naive L2
ENSG00000118518 RNF146 283039 sc-eQTL 6.45e-01 0.0413 0.0897 0.63 CD8_Naive L2
ENSG00000152894 PTPRK -971025 sc-eQTL 4.15e-01 -0.0538 0.0658 0.63 CD8_Naive L2
ENSG00000172673 THEMIS -368982 sc-eQTL 8.64e-01 -0.0096 0.0559 0.63 CD8_Naive L2
ENSG00000227945 AL590006.1 -478237 sc-eQTL 8.02e-01 -0.0214 0.0853 0.63 CD8_Naive L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 7.17e-02 -0.155 0.0856 0.646 CD8_TCM L2
ENSG00000118518 RNF146 283039 sc-eQTL 7.54e-01 0.0315 0.1 0.646 CD8_TCM L2
ENSG00000152894 PTPRK -971025 sc-eQTL 1.71e-01 0.112 0.0814 0.646 CD8_TCM L2
ENSG00000172673 THEMIS -368982 sc-eQTL 3.12e-01 0.0883 0.0871 0.646 CD8_TCM L2
ENSG00000227945 AL590006.1 -478237 sc-eQTL 9.70e-01 -0.00305 0.0801 0.646 CD8_TCM L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 3.63e-01 -0.0844 0.0925 0.635 CD8_TEM L2
ENSG00000118518 RNF146 283039 sc-eQTL 4.58e-01 -0.0702 0.0944 0.635 CD8_TEM L2
ENSG00000152894 PTPRK -971025 sc-eQTL 9.00e-01 0.00931 0.0744 0.635 CD8_TEM L2
ENSG00000172673 THEMIS -368982 sc-eQTL 7.78e-01 -0.0237 0.0839 0.635 CD8_TEM L2
ENSG00000227945 AL590006.1 -478237 sc-eQTL 7.32e-01 -0.0247 0.072 0.635 CD8_TEM L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 9.81e-01 0.00211 0.0875 0.632 MAIT L2
ENSG00000118518 RNF146 283039 sc-eQTL 5.40e-01 -0.0569 0.0926 0.632 MAIT L2
ENSG00000172673 THEMIS -368982 sc-eQTL 6.24e-01 0.0363 0.0739 0.632 MAIT L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 8.44e-01 -0.0183 0.0925 0.636 NK_CD56bright L2
ENSG00000118518 RNF146 283039 sc-eQTL 2.59e-01 -0.109 0.0965 0.636 NK_CD56bright L2
ENSG00000172673 THEMIS -368982 sc-eQTL 9.79e-01 -0.00187 0.0704 0.636 NK_CD56bright L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 1.85e-02 0.17 0.0717 0.631 NK_CD56dim L2
ENSG00000118518 RNF146 283039 sc-eQTL 7.99e-01 0.0213 0.0834 0.631 NK_CD56dim L2
ENSG00000172673 THEMIS -368982 sc-eQTL 7.77e-01 -0.0235 0.0825 0.631 NK_CD56dim L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 6.61e-01 -0.0424 0.0965 0.63 NK_HLA L2
ENSG00000118518 RNF146 283039 sc-eQTL 5.40e-01 -0.0611 0.0995 0.63 NK_HLA L2
ENSG00000172673 THEMIS -368982 sc-eQTL 6.62e-01 0.0339 0.0775 0.63 NK_HLA L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 1.82e-01 0.108 0.0803 0.631 NK_cytokine L2
ENSG00000118518 RNF146 283039 sc-eQTL 8.42e-01 -0.0166 0.0832 0.631 NK_cytokine L2
ENSG00000172673 THEMIS -368982 sc-eQTL 4.98e-01 -0.0534 0.0786 0.631 NK_cytokine L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 8.74e-01 0.0152 0.0954 0.626 PB L2
ENSG00000118518 RNF146 283039 sc-eQTL 7.06e-01 0.0482 0.128 0.626 PB L2
ENSG00000152894 PTPRK -971025 sc-eQTL 6.63e-01 -0.0386 0.0883 0.626 PB L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 7.47e-03 -0.189 0.07 0.63 Pro_T L2
ENSG00000118518 RNF146 283039 sc-eQTL 2.95e-02 -0.189 0.0861 0.63 Pro_T L2
ENSG00000172673 THEMIS -368982 sc-eQTL 5.24e-01 -0.0385 0.0604 0.63 Pro_T L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 8.19e-01 0.0196 0.0858 0.63 Treg L2
ENSG00000118518 RNF146 283039 sc-eQTL 5.94e-01 0.0497 0.0931 0.63 Treg L2
ENSG00000172673 THEMIS -368982 sc-eQTL 6.76e-01 -0.0382 0.0914 0.63 Treg L2
ENSG00000214338 SOGA3 30458 sc-eQTL 3.51e-01 0.0724 0.0775 0.63 Treg L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 2.94e-01 -0.0936 0.0889 0.615 cDC L2
ENSG00000118518 RNF146 283039 sc-eQTL 3.73e-02 -0.204 0.0974 0.615 cDC L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 8.10e-01 0.0144 0.0595 0.63 cMono_IL1B L2
ENSG00000118518 RNF146 283039 sc-eQTL 1.76e-01 -0.0952 0.0701 0.63 cMono_IL1B L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 6.01e-01 -0.0368 0.0702 0.63 cMono_S100A L2
ENSG00000118518 RNF146 283039 sc-eQTL 4.01e-01 -0.064 0.0761 0.63 cMono_S100A L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 1.98e-01 -0.133 0.103 0.648 gdT L2
ENSG00000118518 RNF146 283039 sc-eQTL 3.16e-01 -0.105 0.104 0.648 gdT L2
ENSG00000172673 THEMIS -368982 sc-eQTL 3.56e-01 -0.0913 0.0986 0.648 gdT L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 5.70e-01 0.0449 0.0788 0.633 intMono L2
ENSG00000118518 RNF146 283039 sc-eQTL 6.67e-01 -0.0359 0.0832 0.633 intMono L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 8.30e-01 0.0177 0.0823 0.629 ncMono L2
ENSG00000118518 RNF146 283039 sc-eQTL 8.45e-01 -0.0155 0.0794 0.629 ncMono L2
ENSG00000093144 ECHDC1 206040 sc-eQTL 9.01e-01 -0.01 0.0804 0.63 pDC L2
ENSG00000118518 RNF146 283039 sc-eQTL 4.38e-01 0.0793 0.102 0.63 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 206040 sc-eQTL 8.95e-01 -0.00801 0.0606 0.63 B_Memory LOneK1K
ENSG00000118518 RNF146 283039 sc-eQTL 9.31e-01 0.0075 0.087 0.63 B_Memory LOneK1K
ENSG00000152894 PTPRK -971025 sc-eQTL 3.04e-01 -0.0811 0.0787 0.63 B_Memory LOneK1K
ENSG00000093144 ECHDC1 206040 sc-eQTL 2.65e-01 0.0544 0.0487 0.63 B_Naive LOneK1K
ENSG00000118518 RNF146 283039 sc-eQTL 2.23e-01 0.102 0.0834 0.63 B_Naive LOneK1K
ENSG00000152894 PTPRK -971025 sc-eQTL 8.01e-02 -0.107 0.0609 0.63 B_Naive LOneK1K
ENSG00000093144 ECHDC1 206040 sc-eQTL 9.03e-01 0.00674 0.055 0.63 CD14_Mono LOneK1K
ENSG00000118518 RNF146 283039 sc-eQTL 1.81e-01 -0.0876 0.0653 0.63 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 206040 sc-eQTL 3.34e-01 0.0717 0.0741 0.634 CD16_Mono LOneK1K
ENSG00000118518 RNF146 283039 sc-eQTL 5.66e-01 0.0398 0.0692 0.634 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 206040 sc-eQTL 3.74e-02 0.142 0.0677 0.631 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 283039 sc-eQTL 7.39e-01 0.0259 0.0777 0.631 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -368982 sc-eQTL 5.20e-01 -0.0539 0.0836 0.631 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 206040 eQTL 1.39e-07 -0.0903 0.017 0.0 0.0 0.419
ENSG00000189367 KIAA0408 90260 eQTL 0.0391 0.0804 0.0389 0.00132 0.0 0.419
ENSG00000214338 SOGA3 30458 eQTL 0.00874 0.079 0.0301 0.00116 0.0 0.419

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000093144 ECHDC1 206040 1.28e-06 1.36e-06 2.81e-07 1.28e-06 1.54e-07 4.73e-07 1.48e-06 3.9e-07 1.44e-06 4.48e-07 1.89e-06 6.08e-07 2.12e-06 2.79e-07 5.69e-07 7.13e-07 9.14e-07 7.78e-07 8.2e-07 6.99e-07 3.6e-07 1.27e-06 9.01e-07 6.51e-07 2.41e-06 4.33e-07 8.99e-07 7.25e-07 1.33e-06 1.29e-06 6.52e-07 3.77e-08 2.16e-07 5.78e-07 5.2e-07 3.95e-07 3.4e-07 1.32e-07 3.48e-07 2.5e-07 1.18e-07 1.61e-06 9.42e-08 1.99e-07 1.82e-07 9.94e-08 1.8e-07 8.88e-08 9.51e-08
ENSG00000189367 KIAA0408 90260 4.29e-06 4.79e-06 3.17e-07 2.89e-06 4.76e-07 8.3e-07 3.49e-06 1.03e-06 3.4e-06 1.6e-06 4.1e-06 2.02e-06 6.46e-06 1.47e-06 9.89e-07 1.93e-06 1.86e-06 2.69e-06 1.42e-06 1.17e-06 1.44e-06 3.38e-06 3.38e-06 1.6e-06 5.93e-06 1.13e-06 1.77e-06 1.81e-06 3.87e-06 3.09e-06 2.02e-06 2.21e-07 5.68e-07 1.43e-06 2.1e-06 9.87e-07 7.55e-07 4.37e-07 1.23e-06 3.28e-07 3.18e-07 5.19e-06 5.27e-07 1.87e-07 3.45e-07 3.66e-07 6.75e-07 2.26e-07 1.54e-07