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Genes within 1Mb (chr6:127540712:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 197103 sc-eQTL 3.34e-01 -0.0579 0.0598 0.156 B L1
ENSG00000118518 RNF146 274102 sc-eQTL 5.17e-01 -0.0619 0.0953 0.156 B L1
ENSG00000152894 PTPRK -979962 sc-eQTL 7.58e-01 -0.0223 0.0724 0.156 B L1
ENSG00000093144 ECHDC1 197103 sc-eQTL 3.88e-01 -0.0655 0.0757 0.156 CD4T L1
ENSG00000118518 RNF146 274102 sc-eQTL 9.83e-01 0.00225 0.104 0.156 CD4T L1
ENSG00000172673 THEMIS -377919 sc-eQTL 7.17e-01 0.0287 0.079 0.156 CD4T L1
ENSG00000214338 SOGA3 21521 sc-eQTL 1.75e-02 0.159 0.0663 0.156 CD4T L1
ENSG00000093144 ECHDC1 197103 sc-eQTL 5.60e-01 -0.053 0.0908 0.156 CD8T L1
ENSG00000118518 RNF146 274102 sc-eQTL 3.87e-01 0.101 0.117 0.156 CD8T L1
ENSG00000152894 PTPRK -979962 sc-eQTL 7.28e-01 -0.022 0.0634 0.156 CD8T L1
ENSG00000172673 THEMIS -377919 sc-eQTL 6.61e-01 0.0398 0.0907 0.156 CD8T L1
ENSG00000227945 AL590006.1 -487174 sc-eQTL 7.44e-01 -0.0297 0.0908 0.156 CD8T L1
ENSG00000093144 ECHDC1 197103 sc-eQTL 7.31e-02 -0.183 0.102 0.158 DC L1
ENSG00000118518 RNF146 274102 sc-eQTL 4.27e-01 0.0994 0.125 0.158 DC L1
ENSG00000093144 ECHDC1 197103 sc-eQTL 5.04e-01 -0.0487 0.0727 0.156 Mono L1
ENSG00000118518 RNF146 274102 sc-eQTL 8.13e-01 -0.0192 0.0809 0.156 Mono L1
ENSG00000093144 ECHDC1 197103 sc-eQTL 5.17e-01 0.0577 0.0889 0.155 NK L1
ENSG00000118518 RNF146 274102 sc-eQTL 2.27e-01 0.124 0.102 0.155 NK L1
ENSG00000172673 THEMIS -377919 sc-eQTL 9.07e-01 0.0136 0.116 0.155 NK L1
ENSG00000093144 ECHDC1 197103 sc-eQTL 5.38e-01 -0.0499 0.0809 0.156 Other_T L1
ENSG00000118518 RNF146 274102 sc-eQTL 6.42e-01 -0.0542 0.116 0.156 Other_T L1
ENSG00000172673 THEMIS -377919 sc-eQTL 2.33e-01 -0.101 0.0843 0.156 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 197103 sc-eQTL 1.91e-01 0.191 0.145 0.148 B_Activated L2
ENSG00000118518 RNF146 274102 sc-eQTL 8.07e-02 -0.258 0.147 0.148 B_Activated L2
ENSG00000152894 PTPRK -979962 sc-eQTL 2.96e-01 -0.141 0.135 0.148 B_Activated L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 5.94e-01 -0.0511 0.0956 0.155 B_Intermediate L2
ENSG00000118518 RNF146 274102 sc-eQTL 4.63e-01 0.0902 0.123 0.155 B_Intermediate L2
ENSG00000152894 PTPRK -979962 sc-eQTL 2.44e-01 -0.14 0.12 0.155 B_Intermediate L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 5.30e-01 -0.0687 0.109 0.153 B_Memory L2
ENSG00000118518 RNF146 274102 sc-eQTL 8.96e-01 -0.0167 0.127 0.153 B_Memory L2
ENSG00000152894 PTPRK -979962 sc-eQTL 7.74e-01 0.034 0.118 0.153 B_Memory L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 8.37e-01 0.0148 0.072 0.156 B_Naive1 L2
ENSG00000118518 RNF146 274102 sc-eQTL 9.94e-01 -0.000897 0.113 0.156 B_Naive1 L2
ENSG00000152894 PTPRK -979962 sc-eQTL 6.57e-01 -0.0406 0.0913 0.156 B_Naive1 L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 6.28e-01 -0.0448 0.0923 0.155 B_Naive2 L2
ENSG00000118518 RNF146 274102 sc-eQTL 7.80e-01 0.0358 0.128 0.155 B_Naive2 L2
ENSG00000152894 PTPRK -979962 sc-eQTL 7.10e-01 -0.038 0.102 0.155 B_Naive2 L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 2.13e-01 -0.167 0.133 0.157 CD4_CTL L2
ENSG00000118518 RNF146 274102 sc-eQTL 7.24e-01 0.0463 0.131 0.157 CD4_CTL L2
ENSG00000172673 THEMIS -377919 sc-eQTL 1.15e-01 0.139 0.0878 0.157 CD4_CTL L2
ENSG00000214338 SOGA3 21521 sc-eQTL 1.95e-01 0.153 0.118 0.157 CD4_CTL L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 9.50e-01 0.00574 0.092 0.156 CD4_Naive L2
ENSG00000118518 RNF146 274102 sc-eQTL 7.85e-01 -0.03 0.11 0.156 CD4_Naive L2
ENSG00000172673 THEMIS -377919 sc-eQTL 8.17e-01 -0.0183 0.079 0.156 CD4_Naive L2
ENSG00000214338 SOGA3 21521 sc-eQTL 2.64e-03 0.224 0.0736 0.156 CD4_Naive L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 4.60e-01 -0.0701 0.0947 0.156 CD4_TCM L2
ENSG00000118518 RNF146 274102 sc-eQTL 2.44e-01 0.143 0.123 0.156 CD4_TCM L2
ENSG00000172673 THEMIS -377919 sc-eQTL 5.94e-01 0.0483 0.0905 0.156 CD4_TCM L2
ENSG00000214338 SOGA3 21521 sc-eQTL 9.10e-01 0.0105 0.0932 0.156 CD4_TCM L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 4.21e-01 0.0923 0.114 0.156 CD4_TEM L2
ENSG00000118518 RNF146 274102 sc-eQTL 3.30e-01 -0.127 0.13 0.156 CD4_TEM L2
ENSG00000172673 THEMIS -377919 sc-eQTL 9.92e-01 -0.00108 0.104 0.156 CD4_TEM L2
ENSG00000214338 SOGA3 21521 sc-eQTL 1.91e-01 0.141 0.107 0.156 CD4_TEM L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 5.59e-01 0.0649 0.111 0.156 CD8_CTL L2
ENSG00000118518 RNF146 274102 sc-eQTL 9.22e-01 0.0129 0.131 0.156 CD8_CTL L2
ENSG00000152894 PTPRK -979962 sc-eQTL 8.54e-01 0.0205 0.111 0.156 CD8_CTL L2
ENSG00000172673 THEMIS -377919 sc-eQTL 8.15e-01 0.0222 0.0949 0.156 CD8_CTL L2
ENSG00000227945 AL590006.1 -487174 sc-eQTL 2.75e-01 -0.103 0.094 0.156 CD8_CTL L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 7.13e-01 0.0413 0.112 0.156 CD8_Naive L2
ENSG00000118518 RNF146 274102 sc-eQTL 2.54e-02 0.268 0.119 0.156 CD8_Naive L2
ENSG00000152894 PTPRK -979962 sc-eQTL 6.18e-01 -0.0441 0.0883 0.156 CD8_Naive L2
ENSG00000172673 THEMIS -377919 sc-eQTL 7.13e-01 0.0277 0.075 0.156 CD8_Naive L2
ENSG00000227945 AL590006.1 -487174 sc-eQTL 7.88e-01 -0.0308 0.114 0.156 CD8_Naive L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 6.44e-02 -0.224 0.121 0.162 CD8_TCM L2
ENSG00000118518 RNF146 274102 sc-eQTL 5.35e-01 -0.0878 0.141 0.162 CD8_TCM L2
ENSG00000152894 PTPRK -979962 sc-eQTL 7.02e-01 0.0442 0.115 0.162 CD8_TCM L2
ENSG00000172673 THEMIS -377919 sc-eQTL 1.50e-01 -0.177 0.122 0.162 CD8_TCM L2
ENSG00000227945 AL590006.1 -487174 sc-eQTL 9.41e-01 -0.00843 0.113 0.162 CD8_TCM L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 1.38e-01 -0.184 0.124 0.162 CD8_TEM L2
ENSG00000118518 RNF146 274102 sc-eQTL 5.01e-01 0.0855 0.127 0.162 CD8_TEM L2
ENSG00000152894 PTPRK -979962 sc-eQTL 8.27e-01 0.0219 0.0999 0.162 CD8_TEM L2
ENSG00000172673 THEMIS -377919 sc-eQTL 7.61e-01 -0.0344 0.113 0.162 CD8_TEM L2
ENSG00000227945 AL590006.1 -487174 sc-eQTL 7.86e-01 -0.0263 0.0967 0.162 CD8_TEM L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 1.35e-01 0.177 0.118 0.158 MAIT L2
ENSG00000118518 RNF146 274102 sc-eQTL 7.83e-01 -0.0346 0.126 0.158 MAIT L2
ENSG00000172673 THEMIS -377919 sc-eQTL 3.90e-01 -0.0861 0.0999 0.158 MAIT L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 1.45e-01 0.184 0.126 0.153 NK_CD56bright L2
ENSG00000118518 RNF146 274102 sc-eQTL 6.66e-01 0.0571 0.132 0.153 NK_CD56bright L2
ENSG00000172673 THEMIS -377919 sc-eQTL 2.21e-01 -0.118 0.0958 0.153 NK_CD56bright L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 3.46e-01 0.0954 0.101 0.155 NK_CD56dim L2
ENSG00000118518 RNF146 274102 sc-eQTL 8.78e-01 0.0178 0.116 0.155 NK_CD56dim L2
ENSG00000172673 THEMIS -377919 sc-eQTL 8.62e-01 -0.0201 0.115 0.155 NK_CD56dim L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 8.50e-01 -0.0249 0.131 0.155 NK_HLA L2
ENSG00000118518 RNF146 274102 sc-eQTL 6.09e-01 -0.0692 0.135 0.155 NK_HLA L2
ENSG00000172673 THEMIS -377919 sc-eQTL 9.42e-01 -0.00773 0.105 0.155 NK_HLA L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 8.92e-01 -0.0149 0.109 0.155 NK_cytokine L2
ENSG00000118518 RNF146 274102 sc-eQTL 2.62e-01 0.126 0.112 0.155 NK_cytokine L2
ENSG00000172673 THEMIS -377919 sc-eQTL 5.49e-01 0.0639 0.107 0.155 NK_cytokine L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 8.05e-01 -0.032 0.129 0.156 PB L2
ENSG00000118518 RNF146 274102 sc-eQTL 9.08e-01 -0.0201 0.173 0.156 PB L2
ENSG00000152894 PTPRK -979962 sc-eQTL 5.60e-01 0.07 0.12 0.156 PB L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 1.64e-03 -0.31 0.0971 0.154 Pro_T L2
ENSG00000118518 RNF146 274102 sc-eQTL 4.12e-01 -0.0998 0.121 0.154 Pro_T L2
ENSG00000172673 THEMIS -377919 sc-eQTL 1.20e-01 -0.131 0.084 0.154 Pro_T L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 4.15e-01 -0.095 0.116 0.156 Treg L2
ENSG00000118518 RNF146 274102 sc-eQTL 7.26e-01 0.0443 0.126 0.156 Treg L2
ENSG00000172673 THEMIS -377919 sc-eQTL 8.33e-01 0.0263 0.124 0.156 Treg L2
ENSG00000214338 SOGA3 21521 sc-eQTL 4.41e-01 0.0811 0.105 0.156 Treg L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 1.05e-01 -0.204 0.125 0.154 cDC L2
ENSG00000118518 RNF146 274102 sc-eQTL 8.11e-02 0.242 0.138 0.154 cDC L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 7.57e-01 -0.0253 0.0814 0.156 cMono_IL1B L2
ENSG00000118518 RNF146 274102 sc-eQTL 9.22e-01 0.00939 0.0962 0.156 cMono_IL1B L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 9.03e-01 -0.0115 0.0947 0.156 cMono_S100A L2
ENSG00000118518 RNF146 274102 sc-eQTL 5.45e-01 -0.0623 0.103 0.156 cMono_S100A L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 8.09e-01 -0.0344 0.142 0.161 gdT L2
ENSG00000118518 RNF146 274102 sc-eQTL 1.89e-01 -0.189 0.143 0.161 gdT L2
ENSG00000172673 THEMIS -377919 sc-eQTL 2.49e-01 -0.157 0.135 0.161 gdT L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 1.40e-01 -0.165 0.111 0.156 intMono L2
ENSG00000118518 RNF146 274102 sc-eQTL 3.79e-01 -0.104 0.118 0.156 intMono L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 2.12e-01 -0.143 0.114 0.156 ncMono L2
ENSG00000118518 RNF146 274102 sc-eQTL 3.40e-01 -0.105 0.11 0.156 ncMono L2
ENSG00000093144 ECHDC1 197103 sc-eQTL 6.92e-01 -0.0473 0.119 0.144 pDC L2
ENSG00000118518 RNF146 274102 sc-eQTL 5.41e-01 0.0925 0.151 0.144 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 197103 sc-eQTL 8.22e-01 0.0188 0.0835 0.156 B_Memory LOneK1K
ENSG00000118518 RNF146 274102 sc-eQTL 5.69e-01 -0.0683 0.12 0.156 B_Memory LOneK1K
ENSG00000152894 PTPRK -979962 sc-eQTL 3.46e-01 -0.102 0.109 0.156 B_Memory LOneK1K
ENSG00000093144 ECHDC1 197103 sc-eQTL 6.20e-01 -0.0324 0.0653 0.156 B_Naive LOneK1K
ENSG00000118518 RNF146 274102 sc-eQTL 7.28e-01 0.0391 0.112 0.156 B_Naive LOneK1K
ENSG00000152894 PTPRK -979962 sc-eQTL 3.43e-01 -0.0778 0.0819 0.156 B_Naive LOneK1K
ENSG00000093144 ECHDC1 197103 sc-eQTL 9.41e-01 0.00546 0.074 0.156 CD14_Mono LOneK1K
ENSG00000118518 RNF146 274102 sc-eQTL 9.87e-01 0.00145 0.0881 0.156 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 197103 sc-eQTL 2.82e-01 -0.112 0.104 0.155 CD16_Mono LOneK1K
ENSG00000118518 RNF146 274102 sc-eQTL 3.25e-01 -0.0956 0.097 0.155 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 197103 sc-eQTL 5.66e-01 0.0541 0.0942 0.155 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 274102 sc-eQTL 2.98e-01 0.112 0.107 0.155 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -377919 sc-eQTL 7.24e-01 0.0407 0.115 0.155 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000172673 THEMIS -377919 eQTL 0.0272 -0.0477 0.0216 0.00165 0.0 0.134
ENSG00000214338 SOGA3 21521 eQTL 0.00834 0.113 0.0428 0.00203 0.0 0.134

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000172673 THEMIS -377919 8.15e-07 5.6e-07 1.14e-07 4.08e-07 9.82e-08 1.77e-07 5.01e-07 9.69e-08 3.62e-07 2.16e-07 5.73e-07 3.27e-07 7.02e-07 1.23e-07 2.15e-07 1.92e-07 3.52e-07 3.58e-07 1.7e-07 1.69e-07 1.89e-07 3.34e-07 3.19e-07 1.34e-07 7.01e-07 2.32e-07 2.62e-07 2.71e-07 2.78e-07 5.17e-07 2.43e-07 4.03e-08 5.31e-08 1.37e-07 3.4e-07 1.28e-07 8.35e-08 9.46e-08 4.55e-08 2.59e-08 7.96e-08 4.35e-07 4.3e-08 1.11e-08 1.25e-07 1.35e-08 1.04e-07 3.21e-08 5.86e-08