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Genes within 1Mb (chr6:127532299:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 188690 sc-eQTL 7.40e-01 -0.0151 0.0455 0.669 B L1
ENSG00000118518 RNF146 265689 sc-eQTL 5.97e-01 0.0384 0.0724 0.669 B L1
ENSG00000152894 PTPRK -988375 sc-eQTL 2.69e-01 -0.0608 0.0548 0.669 B L1
ENSG00000093144 ECHDC1 188690 sc-eQTL 2.40e-01 -0.0655 0.0557 0.669 CD4T L1
ENSG00000118518 RNF146 265689 sc-eQTL 2.55e-01 0.0868 0.0761 0.669 CD4T L1
ENSG00000172673 THEMIS -386332 sc-eQTL 7.04e-01 -0.0221 0.0582 0.669 CD4T L1
ENSG00000214338 SOGA3 13108 sc-eQTL 6.42e-02 0.0914 0.0491 0.669 CD4T L1
ENSG00000093144 ECHDC1 188690 sc-eQTL 6.35e-01 0.0325 0.0683 0.669 CD8T L1
ENSG00000118518 RNF146 265689 sc-eQTL 3.61e-01 -0.0804 0.0877 0.669 CD8T L1
ENSG00000152894 PTPRK -988375 sc-eQTL 2.40e-01 -0.056 0.0475 0.669 CD8T L1
ENSG00000172673 THEMIS -386332 sc-eQTL 8.42e-02 0.118 0.0678 0.669 CD8T L1
ENSG00000227945 AL590006.1 -495587 sc-eQTL 4.57e-01 0.0509 0.0682 0.669 CD8T L1
ENSG00000093144 ECHDC1 188690 sc-eQTL 5.92e-02 -0.142 0.0746 0.673 DC L1
ENSG00000118518 RNF146 265689 sc-eQTL 7.38e-01 0.0308 0.0919 0.673 DC L1
ENSG00000093144 ECHDC1 188690 sc-eQTL 6.01e-01 0.0285 0.0545 0.669 Mono L1
ENSG00000118518 RNF146 265689 sc-eQTL 9.06e-01 -0.00716 0.0605 0.669 Mono L1
ENSG00000093144 ECHDC1 188690 sc-eQTL 2.66e-01 0.0738 0.0662 0.667 NK L1
ENSG00000118518 RNF146 265689 sc-eQTL 6.25e-01 0.0375 0.0767 0.667 NK L1
ENSG00000172673 THEMIS -386332 sc-eQTL 8.05e-01 0.0214 0.0868 0.667 NK L1
ENSG00000093144 ECHDC1 188690 sc-eQTL 2.83e-01 -0.0664 0.0616 0.669 Other_T L1
ENSG00000118518 RNF146 265689 sc-eQTL 9.01e-01 0.011 0.0889 0.669 Other_T L1
ENSG00000172673 THEMIS -386332 sc-eQTL 3.03e-01 0.0665 0.0644 0.669 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 188690 sc-eQTL 5.78e-01 0.0595 0.107 0.671 B_Activated L2
ENSG00000118518 RNF146 265689 sc-eQTL 3.29e-01 -0.106 0.108 0.671 B_Activated L2
ENSG00000152894 PTPRK -988375 sc-eQTL 5.75e-01 -0.0558 0.0991 0.671 B_Activated L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 6.03e-01 -0.0374 0.0719 0.667 B_Intermediate L2
ENSG00000118518 RNF146 265689 sc-eQTL 2.64e-02 -0.204 0.0913 0.667 B_Intermediate L2
ENSG00000152894 PTPRK -988375 sc-eQTL 3.24e-01 -0.089 0.09 0.667 B_Intermediate L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 9.84e-01 0.00165 0.0823 0.67 B_Memory L2
ENSG00000118518 RNF146 265689 sc-eQTL 1.34e-01 0.143 0.0953 0.67 B_Memory L2
ENSG00000152894 PTPRK -988375 sc-eQTL 2.88e-01 0.0945 0.0887 0.67 B_Memory L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 8.28e-01 0.0119 0.0547 0.669 B_Naive1 L2
ENSG00000118518 RNF146 265689 sc-eQTL 5.86e-01 0.0469 0.0859 0.669 B_Naive1 L2
ENSG00000152894 PTPRK -988375 sc-eQTL 6.24e-01 -0.0341 0.0694 0.669 B_Naive1 L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 9.32e-01 0.00594 0.07 0.67 B_Naive2 L2
ENSG00000118518 RNF146 265689 sc-eQTL 1.27e-01 0.148 0.0965 0.67 B_Naive2 L2
ENSG00000152894 PTPRK -988375 sc-eQTL 9.17e-03 -0.2 0.0761 0.67 B_Naive2 L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 9.16e-02 -0.167 0.0988 0.673 CD4_CTL L2
ENSG00000118518 RNF146 265689 sc-eQTL 2.18e-01 0.12 0.0971 0.673 CD4_CTL L2
ENSG00000172673 THEMIS -386332 sc-eQTL 2.88e-01 -0.0699 0.0655 0.673 CD4_CTL L2
ENSG00000214338 SOGA3 13108 sc-eQTL 7.78e-01 0.0248 0.0878 0.673 CD4_CTL L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 5.90e-01 -0.0368 0.0682 0.669 CD4_Naive L2
ENSG00000118518 RNF146 265689 sc-eQTL 3.03e-01 0.084 0.0814 0.669 CD4_Naive L2
ENSG00000172673 THEMIS -386332 sc-eQTL 7.34e-01 -0.0199 0.0586 0.669 CD4_Naive L2
ENSG00000214338 SOGA3 13108 sc-eQTL 2.15e-01 0.0691 0.0556 0.669 CD4_Naive L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 9.84e-01 0.00139 0.0707 0.669 CD4_TCM L2
ENSG00000118518 RNF146 265689 sc-eQTL 1.78e-01 0.123 0.0911 0.669 CD4_TCM L2
ENSG00000172673 THEMIS -386332 sc-eQTL 6.65e-01 0.0292 0.0674 0.669 CD4_TCM L2
ENSG00000214338 SOGA3 13108 sc-eQTL 4.56e-01 0.0518 0.0693 0.669 CD4_TCM L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 4.66e-01 -0.0599 0.0821 0.669 CD4_TEM L2
ENSG00000118518 RNF146 265689 sc-eQTL 4.82e-02 -0.184 0.0926 0.669 CD4_TEM L2
ENSG00000172673 THEMIS -386332 sc-eQTL 2.72e-01 0.0822 0.0746 0.669 CD4_TEM L2
ENSG00000214338 SOGA3 13108 sc-eQTL 1.89e-02 0.181 0.0764 0.669 CD4_TEM L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 5.15e-01 0.0543 0.0832 0.669 CD8_CTL L2
ENSG00000118518 RNF146 265689 sc-eQTL 1.19e-01 -0.154 0.0981 0.669 CD8_CTL L2
ENSG00000152894 PTPRK -988375 sc-eQTL 8.44e-01 -0.0164 0.0833 0.669 CD8_CTL L2
ENSG00000172673 THEMIS -386332 sc-eQTL 1.06e-01 0.115 0.0708 0.669 CD8_CTL L2
ENSG00000227945 AL590006.1 -495587 sc-eQTL 6.22e-01 -0.0349 0.0707 0.669 CD8_CTL L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 2.10e-01 0.107 0.085 0.669 CD8_Naive L2
ENSG00000118518 RNF146 265689 sc-eQTL 6.71e-01 0.0389 0.0913 0.669 CD8_Naive L2
ENSG00000152894 PTPRK -988375 sc-eQTL 2.72e-01 -0.0737 0.0669 0.669 CD8_Naive L2
ENSG00000172673 THEMIS -386332 sc-eQTL 9.17e-01 -0.00595 0.0569 0.669 CD8_Naive L2
ENSG00000227945 AL590006.1 -495587 sc-eQTL 7.31e-01 0.0299 0.0868 0.669 CD8_Naive L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 1.24e-01 -0.136 0.088 0.683 CD8_TCM L2
ENSG00000118518 RNF146 265689 sc-eQTL 8.80e-01 0.0155 0.103 0.683 CD8_TCM L2
ENSG00000152894 PTPRK -988375 sc-eQTL 2.01e-01 0.107 0.0836 0.683 CD8_TCM L2
ENSG00000172673 THEMIS -386332 sc-eQTL 4.04e-01 0.0748 0.0895 0.683 CD8_TCM L2
ENSG00000227945 AL590006.1 -495587 sc-eQTL 6.20e-01 -0.0409 0.0822 0.683 CD8_TCM L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 3.50e-01 -0.0888 0.0947 0.671 CD8_TEM L2
ENSG00000118518 RNF146 265689 sc-eQTL 4.76e-01 -0.069 0.0967 0.671 CD8_TEM L2
ENSG00000152894 PTPRK -988375 sc-eQTL 8.40e-01 -0.0154 0.0762 0.671 CD8_TEM L2
ENSG00000172673 THEMIS -386332 sc-eQTL 6.16e-01 0.0432 0.0859 0.671 CD8_TEM L2
ENSG00000227945 AL590006.1 -495587 sc-eQTL 8.02e-01 0.0185 0.0737 0.671 CD8_TEM L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 8.31e-01 -0.0189 0.0887 0.669 MAIT L2
ENSG00000118518 RNF146 265689 sc-eQTL 6.05e-01 -0.0486 0.0939 0.669 MAIT L2
ENSG00000172673 THEMIS -386332 sc-eQTL 4.03e-01 0.0627 0.0748 0.669 MAIT L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 9.02e-01 0.0116 0.0943 0.673 NK_CD56bright L2
ENSG00000118518 RNF146 265689 sc-eQTL 3.08e-01 -0.101 0.0984 0.673 NK_CD56bright L2
ENSG00000172673 THEMIS -386332 sc-eQTL 5.55e-01 0.0424 0.0717 0.673 NK_CD56bright L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 2.80e-02 0.164 0.074 0.668 NK_CD56dim L2
ENSG00000118518 RNF146 265689 sc-eQTL 6.38e-01 0.0404 0.0858 0.668 NK_CD56dim L2
ENSG00000172673 THEMIS -386332 sc-eQTL 8.57e-01 0.0154 0.085 0.668 NK_CD56dim L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 3.04e-01 -0.102 0.0988 0.669 NK_HLA L2
ENSG00000118518 RNF146 265689 sc-eQTL 4.72e-01 -0.0735 0.102 0.669 NK_HLA L2
ENSG00000172673 THEMIS -386332 sc-eQTL 5.71e-01 0.0451 0.0796 0.669 NK_HLA L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 2.53e-01 0.0949 0.0829 0.668 NK_cytokine L2
ENSG00000118518 RNF146 265689 sc-eQTL 8.11e-01 0.0205 0.0858 0.668 NK_cytokine L2
ENSG00000172673 THEMIS -386332 sc-eQTL 9.36e-01 0.00656 0.0811 0.668 NK_cytokine L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 7.00e-01 0.038 0.0983 0.667 PB L2
ENSG00000118518 RNF146 265689 sc-eQTL 5.59e-01 0.0771 0.132 0.667 PB L2
ENSG00000152894 PTPRK -988375 sc-eQTL 9.52e-01 -0.00547 0.0912 0.667 PB L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 3.17e-02 -0.157 0.0727 0.667 Pro_T L2
ENSG00000118518 RNF146 265689 sc-eQTL 1.21e-01 -0.139 0.0894 0.667 Pro_T L2
ENSG00000172673 THEMIS -386332 sc-eQTL 8.40e-01 -0.0126 0.0624 0.667 Pro_T L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 5.84e-01 -0.048 0.0874 0.669 Treg L2
ENSG00000118518 RNF146 265689 sc-eQTL 4.10e-01 0.0781 0.0948 0.669 Treg L2
ENSG00000172673 THEMIS -386332 sc-eQTL 3.02e-01 -0.0962 0.0929 0.669 Treg L2
ENSG00000214338 SOGA3 13108 sc-eQTL 1.65e-01 0.11 0.0787 0.669 Treg L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 1.01e-01 -0.149 0.0907 0.656 cDC L2
ENSG00000118518 RNF146 265689 sc-eQTL 2.41e-01 -0.118 0.101 0.656 cDC L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 9.60e-01 0.00306 0.0612 0.669 cMono_IL1B L2
ENSG00000118518 RNF146 265689 sc-eQTL 4.03e-01 -0.0605 0.0722 0.669 cMono_IL1B L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 9.61e-01 0.00356 0.0722 0.669 cMono_S100A L2
ENSG00000118518 RNF146 265689 sc-eQTL 3.50e-01 -0.0732 0.0781 0.669 cMono_S100A L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 1.43e-01 -0.157 0.107 0.685 gdT L2
ENSG00000118518 RNF146 265689 sc-eQTL 4.84e-01 -0.0763 0.109 0.685 gdT L2
ENSG00000172673 THEMIS -386332 sc-eQTL 5.40e-01 -0.063 0.103 0.685 gdT L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 5.04e-01 0.0548 0.0817 0.671 intMono L2
ENSG00000118518 RNF146 265689 sc-eQTL 8.65e-01 -0.0147 0.0863 0.671 intMono L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 9.66e-01 0.00365 0.0842 0.667 ncMono L2
ENSG00000118518 RNF146 265689 sc-eQTL 8.96e-01 0.0106 0.0812 0.667 ncMono L2
ENSG00000093144 ECHDC1 188690 sc-eQTL 4.81e-01 -0.0582 0.0825 0.669 pDC L2
ENSG00000118518 RNF146 265689 sc-eQTL 3.69e-01 0.0943 0.105 0.669 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 188690 sc-eQTL 8.53e-01 -0.0116 0.0624 0.669 B_Memory LOneK1K
ENSG00000118518 RNF146 265689 sc-eQTL 6.33e-01 -0.0428 0.0895 0.669 B_Memory LOneK1K
ENSG00000152894 PTPRK -988375 sc-eQTL 5.65e-01 -0.0469 0.0812 0.669 B_Memory LOneK1K
ENSG00000093144 ECHDC1 188690 sc-eQTL 8.60e-01 0.00881 0.0499 0.669 B_Naive LOneK1K
ENSG00000118518 RNF146 265689 sc-eQTL 2.02e-01 0.109 0.0852 0.669 B_Naive LOneK1K
ENSG00000152894 PTPRK -988375 sc-eQTL 6.34e-02 -0.116 0.0621 0.669 B_Naive LOneK1K
ENSG00000093144 ECHDC1 188690 sc-eQTL 7.03e-01 0.0215 0.0563 0.669 CD14_Mono LOneK1K
ENSG00000118518 RNF146 265689 sc-eQTL 3.14e-01 -0.0675 0.0669 0.669 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 188690 sc-eQTL 3.28e-01 0.075 0.0765 0.67 CD16_Mono LOneK1K
ENSG00000118518 RNF146 265689 sc-eQTL 2.98e-01 0.0745 0.0713 0.67 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 188690 sc-eQTL 1.53e-01 0.1 0.0698 0.668 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 265689 sc-eQTL 4.47e-01 0.0607 0.0796 0.668 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -386332 sc-eQTL 8.66e-01 0.0145 0.0857 0.668 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 188690 eQTL 3.33e-09 -0.101 0.0169 0.0 0.0 0.395
ENSG00000189367 KIAA0408 72910 eQTL 0.045 0.0778 0.0387 0.00128 0.0 0.395
ENSG00000214338 SOGA3 13108 eQTL 0.0196 0.07 0.0299 0.0 0.0 0.395

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000093144 ECHDC1 188690 2.66e-06 2.58e-06 2.31e-07 1.7e-06 4.43e-07 8.24e-07 1.61e-06 5.89e-07 1.72e-06 8.08e-07 1.96e-06 1.29e-06 3.58e-06 1.13e-06 5.75e-07 1.18e-06 1.03e-06 1.79e-06 6.59e-07 1.15e-06 8.29e-07 2.19e-06 2.13e-06 9.79e-07 3.46e-06 1.22e-06 1.22e-06 1.46e-06 1.93e-06 1.66e-06 1.29e-06 3.05e-07 4.19e-07 1.2e-06 1.02e-06 8.85e-07 7.83e-07 4.1e-07 9.27e-07 3.28e-07 1.52e-07 2.98e-06 4.14e-07 2.07e-07 3.38e-07 3.08e-07 5.32e-07 2.24e-07 3.12e-07
ENSG00000189367 KIAA0408 72910 7.77e-06 9.46e-06 1.37e-06 4.36e-06 2.09e-06 3.82e-06 9.38e-06 1.68e-06 6.28e-06 4.33e-06 9.93e-06 4.64e-06 1.13e-05 3.83e-06 1.91e-06 5.73e-06 3.67e-06 5.33e-06 2.54e-06 2.62e-06 4.48e-06 7.66e-06 6.91e-06 3.16e-06 1.2e-05 2.91e-06 4.22e-06 3.14e-06 7.73e-06 7.95e-06 4.33e-06 9.05e-07 9.96e-07 2.93e-06 3.5e-06 2.28e-06 1.64e-06 1.75e-06 1.61e-06 1.01e-06 1.04e-06 9.56e-06 1.22e-06 1.61e-07 8.02e-07 1.48e-06 1.24e-06 7.55e-07 5.39e-07