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Genes within 1Mb (chr6:127518613:CA:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 175004 sc-eQTL 8.93e-01 -0.00615 0.0457 0.675 B L1
ENSG00000118518 RNF146 252003 sc-eQTL 4.52e-01 0.0548 0.0727 0.675 B L1
ENSG00000093144 ECHDC1 175004 sc-eQTL 2.56e-01 -0.0638 0.056 0.675 CD4T L1
ENSG00000118518 RNF146 252003 sc-eQTL 1.59e-01 0.108 0.0764 0.675 CD4T L1
ENSG00000172673 THEMIS -400018 sc-eQTL 7.91e-01 -0.0156 0.0586 0.675 CD4T L1
ENSG00000214338 SOGA3 -578 sc-eQTL 5.34e-02 0.0959 0.0494 0.675 CD4T L1
ENSG00000093144 ECHDC1 175004 sc-eQTL 7.28e-01 0.024 0.0688 0.675 CD8T L1
ENSG00000118518 RNF146 252003 sc-eQTL 3.73e-01 -0.0788 0.0882 0.675 CD8T L1
ENSG00000172673 THEMIS -400018 sc-eQTL 1.27e-01 0.105 0.0683 0.675 CD8T L1
ENSG00000227945 AL590006.1 -509273 sc-eQTL 4.90e-01 0.0475 0.0686 0.675 CD8T L1
ENSG00000093144 ECHDC1 175004 sc-eQTL 5.84e-02 -0.143 0.075 0.68 DC L1
ENSG00000118518 RNF146 252003 sc-eQTL 8.53e-01 0.0171 0.0924 0.68 DC L1
ENSG00000093144 ECHDC1 175004 sc-eQTL 7.78e-01 0.0155 0.0548 0.675 Mono L1
ENSG00000118518 RNF146 252003 sc-eQTL 9.38e-01 -0.00477 0.0609 0.675 Mono L1
ENSG00000093144 ECHDC1 175004 sc-eQTL 2.08e-01 0.0836 0.0662 0.674 NK L1
ENSG00000118518 RNF146 252003 sc-eQTL 6.24e-01 0.0377 0.0768 0.674 NK L1
ENSG00000172673 THEMIS -400018 sc-eQTL 8.82e-01 0.0129 0.0869 0.674 NK L1
ENSG00000093144 ECHDC1 175004 sc-eQTL 3.81e-01 -0.0545 0.062 0.675 Other_T L1
ENSG00000118518 RNF146 252003 sc-eQTL 9.64e-01 0.00406 0.0893 0.675 Other_T L1
ENSG00000172673 THEMIS -400018 sc-eQTL 3.29e-01 0.0634 0.0648 0.675 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 175004 sc-eQTL 5.76e-01 0.0596 0.106 0.673 B_Activated L2
ENSG00000118518 RNF146 252003 sc-eQTL 2.70e-01 -0.119 0.108 0.673 B_Activated L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 4.69e-01 -0.0525 0.0724 0.674 B_Intermediate L2
ENSG00000118518 RNF146 252003 sc-eQTL 1.53e-02 -0.224 0.0917 0.674 B_Intermediate L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 8.22e-01 0.0187 0.083 0.677 B_Memory L2
ENSG00000118518 RNF146 252003 sc-eQTL 1.20e-01 0.15 0.096 0.677 B_Memory L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 7.83e-01 0.0151 0.0549 0.675 B_Naive1 L2
ENSG00000118518 RNF146 252003 sc-eQTL 6.06e-01 0.0445 0.0863 0.675 B_Naive1 L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 6.93e-01 0.0278 0.0703 0.676 B_Naive2 L2
ENSG00000118518 RNF146 252003 sc-eQTL 6.21e-02 0.181 0.0967 0.676 B_Naive2 L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 1.08e-01 -0.16 0.0994 0.68 CD4_CTL L2
ENSG00000118518 RNF146 252003 sc-eQTL 1.81e-01 0.131 0.0975 0.68 CD4_CTL L2
ENSG00000172673 THEMIS -400018 sc-eQTL 2.24e-01 -0.0804 0.0658 0.68 CD4_CTL L2
ENSG00000214338 SOGA3 -578 sc-eQTL 7.44e-01 0.0289 0.0883 0.68 CD4_CTL L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 5.51e-01 -0.041 0.0686 0.675 CD4_Naive L2
ENSG00000118518 RNF146 252003 sc-eQTL 2.11e-01 0.103 0.0817 0.675 CD4_Naive L2
ENSG00000172673 THEMIS -400018 sc-eQTL 8.34e-01 -0.0123 0.0589 0.675 CD4_Naive L2
ENSG00000214338 SOGA3 -578 sc-eQTL 2.74e-01 0.0613 0.0559 0.675 CD4_Naive L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 9.80e-01 0.00175 0.0708 0.675 CD4_TCM L2
ENSG00000118518 RNF146 252003 sc-eQTL 1.96e-01 0.118 0.0914 0.675 CD4_TCM L2
ENSG00000172673 THEMIS -400018 sc-eQTL 7.14e-01 0.0249 0.0676 0.675 CD4_TCM L2
ENSG00000214338 SOGA3 -578 sc-eQTL 4.77e-01 0.0496 0.0695 0.675 CD4_TCM L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 6.29e-01 -0.04 0.0826 0.675 CD4_TEM L2
ENSG00000118518 RNF146 252003 sc-eQTL 5.03e-02 -0.183 0.0932 0.675 CD4_TEM L2
ENSG00000172673 THEMIS -400018 sc-eQTL 2.84e-01 0.0805 0.075 0.675 CD4_TEM L2
ENSG00000214338 SOGA3 -578 sc-eQTL 1.30e-02 0.192 0.0767 0.675 CD4_TEM L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 7.23e-01 0.0298 0.0838 0.675 CD8_CTL L2
ENSG00000118518 RNF146 252003 sc-eQTL 1.39e-01 -0.147 0.0987 0.675 CD8_CTL L2
ENSG00000172673 THEMIS -400018 sc-eQTL 1.19e-01 0.112 0.0713 0.675 CD8_CTL L2
ENSG00000227945 AL590006.1 -509273 sc-eQTL 7.48e-01 -0.0229 0.0712 0.675 CD8_CTL L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 2.15e-01 0.106 0.0854 0.675 CD8_Naive L2
ENSG00000118518 RNF146 252003 sc-eQTL 7.14e-01 0.0337 0.0918 0.675 CD8_Naive L2
ENSG00000172673 THEMIS -400018 sc-eQTL 9.09e-01 -0.00655 0.0572 0.675 CD8_Naive L2
ENSG00000227945 AL590006.1 -509273 sc-eQTL 7.28e-01 0.0304 0.0873 0.675 CD8_Naive L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 1.49e-01 -0.128 0.0886 0.69 CD8_TCM L2
ENSG00000118518 RNF146 252003 sc-eQTL 7.64e-01 0.0311 0.103 0.69 CD8_TCM L2
ENSG00000172673 THEMIS -400018 sc-eQTL 4.68e-01 0.0654 0.09 0.69 CD8_TCM L2
ENSG00000227945 AL590006.1 -509273 sc-eQTL 5.87e-01 -0.0449 0.0826 0.69 CD8_TCM L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 1.76e-01 -0.129 0.0954 0.678 CD8_TEM L2
ENSG00000118518 RNF146 252003 sc-eQTL 3.95e-01 -0.0833 0.0976 0.678 CD8_TEM L2
ENSG00000172673 THEMIS -400018 sc-eQTL 6.37e-01 0.041 0.0867 0.678 CD8_TEM L2
ENSG00000227945 AL590006.1 -509273 sc-eQTL 9.96e-01 -0.000371 0.0744 0.678 CD8_TEM L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 8.54e-01 -0.0165 0.0892 0.675 MAIT L2
ENSG00000118518 RNF146 252003 sc-eQTL 5.39e-01 -0.0581 0.0944 0.675 MAIT L2
ENSG00000172673 THEMIS -400018 sc-eQTL 4.00e-01 0.0634 0.0752 0.675 MAIT L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 8.92e-01 0.0129 0.0948 0.68 NK_CD56bright L2
ENSG00000118518 RNF146 252003 sc-eQTL 3.05e-01 -0.102 0.099 0.68 NK_CD56bright L2
ENSG00000172673 THEMIS -400018 sc-eQTL 5.33e-01 0.0451 0.0721 0.68 NK_CD56bright L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 2.40e-02 0.168 0.074 0.675 NK_CD56dim L2
ENSG00000118518 RNF146 252003 sc-eQTL 6.22e-01 0.0424 0.0859 0.675 NK_CD56dim L2
ENSG00000172673 THEMIS -400018 sc-eQTL 8.62e-01 0.0148 0.0851 0.675 NK_CD56dim L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 4.04e-01 -0.0831 0.0995 0.676 NK_HLA L2
ENSG00000118518 RNF146 252003 sc-eQTL 4.84e-01 -0.0721 0.103 0.676 NK_HLA L2
ENSG00000172673 THEMIS -400018 sc-eQTL 6.31e-01 0.0385 0.08 0.676 NK_HLA L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 2.22e-01 0.102 0.0832 0.675 NK_cytokine L2
ENSG00000118518 RNF146 252003 sc-eQTL 8.47e-01 0.0167 0.0861 0.675 NK_cytokine L2
ENSG00000172673 THEMIS -400018 sc-eQTL 8.88e-01 -0.0115 0.0815 0.675 NK_cytokine L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 7.00e-01 0.038 0.0983 0.667 PB L2
ENSG00000118518 RNF146 252003 sc-eQTL 5.59e-01 0.0771 0.132 0.667 PB L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 7.00e-02 -0.134 0.0737 0.674 Pro_T L2
ENSG00000118518 RNF146 252003 sc-eQTL 6.83e-02 -0.165 0.0901 0.674 Pro_T L2
ENSG00000172673 THEMIS -400018 sc-eQTL 7.65e-01 -0.0189 0.0631 0.674 Pro_T L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 7.46e-01 -0.0285 0.088 0.675 Treg L2
ENSG00000118518 RNF146 252003 sc-eQTL 3.23e-01 0.0944 0.0953 0.675 Treg L2
ENSG00000172673 THEMIS -400018 sc-eQTL 3.87e-01 -0.0812 0.0936 0.675 Treg L2
ENSG00000214338 SOGA3 -578 sc-eQTL 9.10e-02 0.134 0.079 0.675 Treg L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 9.13e-02 -0.154 0.091 0.663 cDC L2
ENSG00000118518 RNF146 252003 sc-eQTL 1.96e-01 -0.131 0.101 0.663 cDC L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 9.29e-01 -0.00546 0.0615 0.675 cMono_IL1B L2
ENSG00000118518 RNF146 252003 sc-eQTL 4.29e-01 -0.0575 0.0726 0.675 cMono_IL1B L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 9.38e-01 -0.00567 0.0727 0.675 cMono_S100A L2
ENSG00000118518 RNF146 252003 sc-eQTL 3.53e-01 -0.0732 0.0787 0.675 cMono_S100A L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 1.94e-01 -0.141 0.108 0.694 gdT L2
ENSG00000118518 RNF146 252003 sc-eQTL 4.76e-01 -0.0784 0.11 0.694 gdT L2
ENSG00000172673 THEMIS -400018 sc-eQTL 5.40e-01 -0.0636 0.104 0.694 gdT L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 6.80e-01 0.034 0.0823 0.678 intMono L2
ENSG00000118518 RNF146 252003 sc-eQTL 8.15e-01 -0.0203 0.0868 0.678 intMono L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 9.97e-01 -0.000333 0.0848 0.674 ncMono L2
ENSG00000118518 RNF146 252003 sc-eQTL 8.82e-01 0.0121 0.0817 0.674 ncMono L2
ENSG00000093144 ECHDC1 175004 sc-eQTL 7.78e-01 -0.0232 0.0823 0.678 pDC L2
ENSG00000118518 RNF146 252003 sc-eQTL 3.57e-01 0.0961 0.104 0.678 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 175004 sc-eQTL 8.45e-01 -0.0123 0.063 0.675 B_Memory LOneK1K
ENSG00000118518 RNF146 252003 sc-eQTL 5.83e-01 -0.0496 0.0903 0.675 B_Memory LOneK1K
ENSG00000093144 ECHDC1 175004 sc-eQTL 6.82e-01 0.0205 0.05 0.675 B_Naive LOneK1K
ENSG00000118518 RNF146 252003 sc-eQTL 1.44e-01 0.125 0.0854 0.675 B_Naive LOneK1K
ENSG00000093144 ECHDC1 175004 sc-eQTL 8.48e-01 0.0108 0.0566 0.675 CD14_Mono LOneK1K
ENSG00000118518 RNF146 252003 sc-eQTL 3.16e-01 -0.0677 0.0673 0.675 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 175004 sc-eQTL 4.15e-01 0.0628 0.077 0.677 CD16_Mono LOneK1K
ENSG00000118518 RNF146 252003 sc-eQTL 2.78e-01 0.0781 0.0718 0.677 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 175004 sc-eQTL 1.13e-01 0.111 0.0698 0.675 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 252003 sc-eQTL 4.27e-01 0.0634 0.0797 0.675 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -400018 sc-eQTL 9.25e-01 0.00814 0.0859 0.675 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 175004 eQTL 6.06e-10 -0.106 0.0169 0.0 0.0 0.395
ENSG00000189367 KIAA0408 59224 eQTL 0.0445 0.0784 0.039 0.00129 0.0 0.395
ENSG00000214338 SOGA3 -578 eQTL 0.0257 0.0672 0.0301 0.0 0.0 0.395

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000093144 ECHDC1 175004 4.41e-06 7.87e-06 2.45e-06 3.69e-06 1.53e-06 1.74e-06 4.27e-06 3.75e-07 5.15e-06 1.7e-06 4.84e-06 1.34e-06 7.69e-06 2.04e-06 1.21e-06 4.32e-06 2.92e-06 3.99e-06 1.44e-06 1.13e-06 2.71e-06 4.6e-06 4.49e-06 1.39e-06 5.16e-06 1.81e-06 1.8e-06 1.87e-06 4.38e-06 4.28e-06 2.03e-06 5.57e-07 7.53e-07 1.57e-06 2.03e-06 1.18e-06 1.4e-06 3.97e-07 1.23e-06 1.23e-06 1.51e-07 5.65e-06 8.75e-07 4.33e-07 3.35e-07 6.75e-07 1.01e-06 2.52e-07 6.22e-07
ENSG00000189367 KIAA0408 59224 2.73e-05 2.24e-05 7.57e-06 1.29e-05 3.06e-06 7.14e-06 2.4e-05 2.12e-06 1.64e-05 6.99e-06 1.96e-05 7.38e-06 4.29e-05 7.61e-06 4.5e-06 1.11e-05 1.56e-05 1.7e-05 4.82e-06 3.3e-06 9.95e-06 1.7e-05 2.41e-05 5.78e-06 2.73e-05 5.57e-06 7.65e-06 7.23e-06 1.98e-05 1.93e-05 8.9e-06 1.61e-06 1.29e-06 4.56e-06 8.46e-06 4.07e-06 2.29e-06 2.35e-06 2.25e-06 3.75e-06 1.16e-06 3.1e-05 3.24e-06 2.96e-07 2.07e-06 2.97e-06 3.38e-06 6.73e-07 1.23e-06