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Genes within 1Mb (chr6:127496614:T:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 153005 sc-eQTL 8.35e-01 0.0102 0.0489 0.771 B L1
ENSG00000118518 RNF146 230004 sc-eQTL 5.63e-01 -0.045 0.0778 0.771 B L1
ENSG00000093144 ECHDC1 153005 sc-eQTL 1.36e-01 -0.0896 0.0598 0.771 CD4T L1
ENSG00000118518 RNF146 230004 sc-eQTL 9.03e-01 0.01 0.0821 0.771 CD4T L1
ENSG00000172673 THEMIS -422017 sc-eQTL 4.44e-01 -0.048 0.0626 0.771 CD4T L1
ENSG00000214338 SOGA3 -22577 sc-eQTL 9.83e-01 0.00115 0.0533 0.771 CD4T L1
ENSG00000093144 ECHDC1 153005 sc-eQTL 5.56e-01 0.0434 0.0735 0.771 CD8T L1
ENSG00000118518 RNF146 230004 sc-eQTL 1.20e-01 -0.146 0.094 0.771 CD8T L1
ENSG00000172673 THEMIS -422017 sc-eQTL 9.03e-01 0.00895 0.0734 0.771 CD8T L1
ENSG00000227945 AL590006.1 -531272 sc-eQTL 8.12e-01 0.0175 0.0734 0.771 CD8T L1
ENSG00000093144 ECHDC1 153005 sc-eQTL 6.44e-01 -0.038 0.0822 0.775 DC L1
ENSG00000118518 RNF146 230004 sc-eQTL 8.09e-01 -0.0243 0.1 0.775 DC L1
ENSG00000093144 ECHDC1 153005 sc-eQTL 2.65e-01 -0.0648 0.058 0.771 Mono L1
ENSG00000118518 RNF146 230004 sc-eQTL 1.81e-01 0.0864 0.0644 0.771 Mono L1
ENSG00000093144 ECHDC1 153005 sc-eQTL 1.00e-02 0.182 0.0702 0.773 NK L1
ENSG00000118518 RNF146 230004 sc-eQTL 2.60e-01 0.0929 0.0822 0.773 NK L1
ENSG00000172673 THEMIS -422017 sc-eQTL 2.41e-01 -0.109 0.093 0.773 NK L1
ENSG00000093144 ECHDC1 153005 sc-eQTL 3.18e-01 -0.0674 0.0673 0.771 Other_T L1
ENSG00000118518 RNF146 230004 sc-eQTL 2.80e-01 -0.105 0.0968 0.771 Other_T L1
ENSG00000172673 THEMIS -422017 sc-eQTL 4.05e-01 0.0588 0.0704 0.771 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 153005 sc-eQTL 4.01e-01 -0.0935 0.111 0.763 B_Activated L2
ENSG00000118518 RNF146 230004 sc-eQTL 2.51e-01 0.13 0.112 0.763 B_Activated L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 7.96e-01 0.0206 0.0795 0.77 B_Intermediate L2
ENSG00000118518 RNF146 230004 sc-eQTL 4.72e-01 -0.0735 0.102 0.77 B_Intermediate L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 9.52e-01 0.00535 0.0879 0.774 B_Memory L2
ENSG00000118518 RNF146 230004 sc-eQTL 8.76e-01 0.0159 0.102 0.774 B_Memory L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 3.12e-01 0.0593 0.0586 0.771 B_Naive1 L2
ENSG00000118518 RNF146 230004 sc-eQTL 1.96e-01 -0.119 0.0919 0.771 B_Naive1 L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 7.04e-01 -0.0288 0.0757 0.773 B_Naive2 L2
ENSG00000118518 RNF146 230004 sc-eQTL 6.81e-01 0.0432 0.105 0.773 B_Naive2 L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 2.24e-02 -0.242 0.105 0.777 CD4_CTL L2
ENSG00000118518 RNF146 230004 sc-eQTL 8.84e-01 -0.0152 0.104 0.777 CD4_CTL L2
ENSG00000172673 THEMIS -422017 sc-eQTL 7.17e-01 0.0255 0.0703 0.777 CD4_CTL L2
ENSG00000214338 SOGA3 -22577 sc-eQTL 4.84e-01 0.0658 0.0938 0.777 CD4_CTL L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 3.72e-03 -0.211 0.0719 0.771 CD4_Naive L2
ENSG00000118518 RNF146 230004 sc-eQTL 8.26e-01 -0.0193 0.0877 0.771 CD4_Naive L2
ENSG00000172673 THEMIS -422017 sc-eQTL 2.71e-01 -0.0693 0.0628 0.771 CD4_Naive L2
ENSG00000214338 SOGA3 -22577 sc-eQTL 6.19e-01 0.0298 0.0599 0.771 CD4_Naive L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 1.79e-02 0.178 0.0744 0.771 CD4_TCM L2
ENSG00000118518 RNF146 230004 sc-eQTL 3.60e-01 0.0895 0.0976 0.771 CD4_TCM L2
ENSG00000172673 THEMIS -422017 sc-eQTL 6.51e-01 0.0326 0.072 0.771 CD4_TCM L2
ENSG00000214338 SOGA3 -22577 sc-eQTL 2.54e-01 -0.0845 0.0739 0.771 CD4_TCM L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 3.93e-01 -0.0757 0.0885 0.771 CD4_TEM L2
ENSG00000118518 RNF146 230004 sc-eQTL 9.62e-02 -0.167 0.1 0.771 CD4_TEM L2
ENSG00000172673 THEMIS -422017 sc-eQTL 2.84e-01 0.0865 0.0805 0.771 CD4_TEM L2
ENSG00000214338 SOGA3 -22577 sc-eQTL 9.86e-01 0.0015 0.0834 0.771 CD4_TEM L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 9.08e-01 0.0104 0.0899 0.771 CD8_CTL L2
ENSG00000118518 RNF146 230004 sc-eQTL 7.08e-01 -0.0399 0.106 0.771 CD8_CTL L2
ENSG00000172673 THEMIS -422017 sc-eQTL 8.98e-01 0.00984 0.0769 0.771 CD8_CTL L2
ENSG00000227945 AL590006.1 -531272 sc-eQTL 9.23e-02 -0.128 0.0759 0.771 CD8_CTL L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 2.23e-01 0.112 0.0918 0.771 CD8_Naive L2
ENSG00000118518 RNF146 230004 sc-eQTL 4.20e-01 -0.0796 0.0986 0.771 CD8_Naive L2
ENSG00000172673 THEMIS -422017 sc-eQTL 6.43e-01 -0.0285 0.0615 0.771 CD8_Naive L2
ENSG00000227945 AL590006.1 -531272 sc-eQTL 6.45e-01 0.0432 0.0938 0.771 CD8_Naive L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 1.27e-01 -0.146 0.0952 0.778 CD8_TCM L2
ENSG00000118518 RNF146 230004 sc-eQTL 8.06e-01 0.0273 0.111 0.778 CD8_TCM L2
ENSG00000172673 THEMIS -422017 sc-eQTL 8.18e-01 -0.0223 0.0969 0.778 CD8_TCM L2
ENSG00000227945 AL590006.1 -531272 sc-eQTL 6.04e-01 -0.0461 0.0888 0.778 CD8_TCM L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 7.18e-01 0.0374 0.103 0.774 CD8_TEM L2
ENSG00000118518 RNF146 230004 sc-eQTL 3.46e-02 -0.222 0.104 0.774 CD8_TEM L2
ENSG00000172673 THEMIS -422017 sc-eQTL 5.00e-01 -0.0633 0.0936 0.774 CD8_TEM L2
ENSG00000227945 AL590006.1 -531272 sc-eQTL 9.03e-01 0.00983 0.0804 0.774 CD8_TEM L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 8.10e-01 -0.0233 0.0966 0.773 MAIT L2
ENSG00000118518 RNF146 230004 sc-eQTL 5.64e-01 -0.0592 0.102 0.773 MAIT L2
ENSG00000172673 THEMIS -422017 sc-eQTL 9.09e-02 0.138 0.0811 0.773 MAIT L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 5.73e-01 0.0574 0.102 0.771 NK_CD56bright L2
ENSG00000118518 RNF146 230004 sc-eQTL 6.24e-01 0.0522 0.106 0.771 NK_CD56bright L2
ENSG00000172673 THEMIS -422017 sc-eQTL 6.78e-01 -0.0322 0.0774 0.771 NK_CD56bright L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 1.04e-01 0.132 0.0806 0.772 NK_CD56dim L2
ENSG00000118518 RNF146 230004 sc-eQTL 8.40e-01 0.0188 0.093 0.772 NK_CD56dim L2
ENSG00000172673 THEMIS -422017 sc-eQTL 8.71e-02 -0.157 0.0914 0.772 NK_CD56dim L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 8.23e-01 0.0238 0.106 0.774 NK_HLA L2
ENSG00000118518 RNF146 230004 sc-eQTL 6.94e-01 -0.0432 0.11 0.774 NK_HLA L2
ENSG00000172673 THEMIS -422017 sc-eQTL 6.71e-01 -0.0363 0.0854 0.774 NK_HLA L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 7.83e-02 0.157 0.089 0.772 NK_cytokine L2
ENSG00000118518 RNF146 230004 sc-eQTL 1.84e-01 0.123 0.0921 0.772 NK_cytokine L2
ENSG00000172673 THEMIS -422017 sc-eQTL 3.69e-01 -0.0787 0.0873 0.772 NK_cytokine L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 7.37e-01 -0.0359 0.107 0.77 PB L2
ENSG00000118518 RNF146 230004 sc-eQTL 8.75e-01 0.0226 0.143 0.77 PB L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 3.66e-01 -0.0724 0.0798 0.77 Pro_T L2
ENSG00000118518 RNF146 230004 sc-eQTL 3.09e-01 -0.0995 0.0976 0.77 Pro_T L2
ENSG00000172673 THEMIS -422017 sc-eQTL 2.22e-01 -0.083 0.0677 0.77 Pro_T L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 2.91e-01 0.101 0.0958 0.771 Treg L2
ENSG00000118518 RNF146 230004 sc-eQTL 2.84e-01 0.112 0.104 0.771 Treg L2
ENSG00000172673 THEMIS -422017 sc-eQTL 3.24e-01 0.101 0.102 0.771 Treg L2
ENSG00000214338 SOGA3 -22577 sc-eQTL 6.24e-01 0.0426 0.0868 0.771 Treg L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 3.82e-01 -0.0849 0.0968 0.763 cDC L2
ENSG00000118518 RNF146 230004 sc-eQTL 5.57e-01 -0.063 0.107 0.763 cDC L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 3.49e-01 -0.0619 0.066 0.771 cMono_IL1B L2
ENSG00000118518 RNF146 230004 sc-eQTL 4.98e-01 0.053 0.0781 0.771 cMono_IL1B L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 1.72e-01 -0.106 0.0771 0.771 cMono_S100A L2
ENSG00000118518 RNF146 230004 sc-eQTL 4.80e-01 0.0593 0.0839 0.771 cMono_S100A L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 9.16e-01 0.0118 0.112 0.779 gdT L2
ENSG00000118518 RNF146 230004 sc-eQTL 4.74e-01 -0.0815 0.113 0.779 gdT L2
ENSG00000172673 THEMIS -422017 sc-eQTL 4.22e-01 0.0861 0.107 0.779 gdT L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 2.03e-01 0.11 0.0861 0.771 intMono L2
ENSG00000118518 RNF146 230004 sc-eQTL 9.66e-01 -0.00387 0.0912 0.771 intMono L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 2.00e-01 0.118 0.0919 0.765 ncMono L2
ENSG00000118518 RNF146 230004 sc-eQTL 6.80e-01 0.0367 0.0889 0.765 ncMono L2
ENSG00000093144 ECHDC1 153005 sc-eQTL 5.12e-01 0.0589 0.0897 0.78 pDC L2
ENSG00000118518 RNF146 230004 sc-eQTL 8.61e-01 0.0199 0.114 0.78 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 153005 sc-eQTL 9.37e-01 -0.00539 0.068 0.771 B_Memory LOneK1K
ENSG00000118518 RNF146 230004 sc-eQTL 5.07e-01 0.0649 0.0975 0.771 B_Memory LOneK1K
ENSG00000093144 ECHDC1 153005 sc-eQTL 5.88e-01 0.0289 0.0533 0.771 B_Naive LOneK1K
ENSG00000118518 RNF146 230004 sc-eQTL 6.17e-01 -0.0458 0.0914 0.771 B_Naive LOneK1K
ENSG00000093144 ECHDC1 153005 sc-eQTL 6.83e-02 -0.109 0.0597 0.771 CD14_Mono LOneK1K
ENSG00000118518 RNF146 230004 sc-eQTL 6.28e-01 0.0348 0.0716 0.771 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 153005 sc-eQTL 1.50e-01 0.118 0.0814 0.772 CD16_Mono LOneK1K
ENSG00000118518 RNF146 230004 sc-eQTL 1.97e-01 0.0984 0.076 0.772 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 153005 sc-eQTL 1.50e-02 0.183 0.0746 0.772 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 230004 sc-eQTL 3.29e-01 0.084 0.0858 0.772 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -422017 sc-eQTL 1.69e-01 -0.127 0.0922 0.772 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 153005 eQTL 6.08e-33 -0.223 0.0179 0.0 0.0 0.256
ENSG00000118518 RNF146 230004 eQTL 0.0184 -0.0325 0.0137 0.0 0.0 0.256
ENSG00000189367 KIAA0408 37225 eQTL 0.0706 0.079 0.0436 0.00102 0.0 0.256

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000093144 ECHDC1 153005 3.18e-06 2.47e-06 3.2e-07 1.76e-06 6.04e-07 8.16e-07 2.03e-06 6.98e-07 1.89e-06 9.63e-07 2.43e-06 1.34e-06 3.66e-06 1.44e-06 9.28e-07 1.7e-06 1.17e-06 2.24e-06 1.15e-06 1.51e-06 1.14e-06 3.05e-06 2.47e-06 1.22e-06 3.56e-06 1.08e-06 1.38e-06 1.79e-06 2.18e-06 2.13e-06 1.83e-06 3.44e-07 5.96e-07 1.3e-06 1.27e-06 1.03e-06 7.48e-07 4.57e-07 1.18e-06 3.99e-07 2.79e-07 3.4e-06 4.24e-07 1.9e-07 3.27e-07 3.13e-07 7.57e-07 2.45e-07 1.79e-07