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Genes within 1Mb (chr6:127454021:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 110412 sc-eQTL 6.11e-02 0.08 0.0425 0.62 B L1
ENSG00000118518 RNF146 187411 sc-eQTL 2.69e-01 -0.0755 0.068 0.62 B L1
ENSG00000093144 ECHDC1 110412 sc-eQTL 2.40e-01 -0.0622 0.0528 0.62 CD4T L1
ENSG00000118518 RNF146 187411 sc-eQTL 7.62e-01 -0.022 0.0723 0.62 CD4T L1
ENSG00000172673 THEMIS -464610 sc-eQTL 8.69e-01 0.00911 0.0552 0.62 CD4T L1
ENSG00000214338 SOGA3 -65170 sc-eQTL 1.01e-01 -0.0769 0.0466 0.62 CD4T L1
ENSG00000093144 ECHDC1 110412 sc-eQTL 4.43e-01 0.0498 0.0649 0.62 CD8T L1
ENSG00000118518 RNF146 187411 sc-eQTL 3.45e-02 -0.176 0.0826 0.62 CD8T L1
ENSG00000172673 THEMIS -464610 sc-eQTL 6.11e-01 0.033 0.0648 0.62 CD8T L1
ENSG00000227945 AL590006.1 -573865 sc-eQTL 5.67e-01 0.0372 0.0648 0.62 CD8T L1
ENSG00000093144 ECHDC1 110412 sc-eQTL 4.56e-01 0.0545 0.073 0.631 DC L1
ENSG00000118518 RNF146 187411 sc-eQTL 2.86e-01 -0.0952 0.089 0.631 DC L1
ENSG00000093144 ECHDC1 110412 sc-eQTL 7.83e-01 -0.0143 0.0519 0.62 Mono L1
ENSG00000118518 RNF146 187411 sc-eQTL 1.72e-01 0.0786 0.0574 0.62 Mono L1
ENSG00000093144 ECHDC1 110412 sc-eQTL 2.36e-02 0.144 0.0631 0.62 NK L1
ENSG00000118518 RNF146 187411 sc-eQTL 6.91e-01 0.0293 0.0737 0.62 NK L1
ENSG00000172673 THEMIS -464610 sc-eQTL 5.37e-01 -0.0516 0.0834 0.62 NK L1
ENSG00000093144 ECHDC1 110412 sc-eQTL 8.04e-01 -0.0148 0.0597 0.62 Other_T L1
ENSG00000118518 RNF146 187411 sc-eQTL 7.94e-01 0.0225 0.0858 0.62 Other_T L1
ENSG00000172673 THEMIS -464610 sc-eQTL 1.45e-02 0.152 0.0615 0.62 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 110412 sc-eQTL 2.18e-01 -0.124 0.0999 0.628 B_Activated L2
ENSG00000118518 RNF146 187411 sc-eQTL 7.41e-01 0.0337 0.102 0.628 B_Activated L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 2.88e-01 0.0751 0.0705 0.62 B_Intermediate L2
ENSG00000118518 RNF146 187411 sc-eQTL 2.02e-01 -0.116 0.0904 0.62 B_Intermediate L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 7.25e-01 -0.0277 0.0785 0.623 B_Memory L2
ENSG00000118518 RNF146 187411 sc-eQTL 8.20e-01 -0.0208 0.0914 0.623 B_Memory L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 2.30e-02 0.117 0.0513 0.62 B_Naive1 L2
ENSG00000118518 RNF146 187411 sc-eQTL 1.12e-01 -0.129 0.0811 0.62 B_Naive1 L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 5.93e-01 0.0361 0.0674 0.62 B_Naive2 L2
ENSG00000118518 RNF146 187411 sc-eQTL 5.11e-01 0.0614 0.0934 0.62 B_Naive2 L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 5.93e-01 -0.0504 0.0942 0.632 CD4_CTL L2
ENSG00000118518 RNF146 187411 sc-eQTL 7.68e-01 -0.0273 0.0923 0.632 CD4_CTL L2
ENSG00000172673 THEMIS -464610 sc-eQTL 9.34e-01 0.00514 0.0623 0.632 CD4_CTL L2
ENSG00000214338 SOGA3 -65170 sc-eQTL 5.12e-01 0.0546 0.0832 0.632 CD4_CTL L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 8.09e-03 -0.17 0.0635 0.62 CD4_Naive L2
ENSG00000118518 RNF146 187411 sc-eQTL 7.58e-01 0.0238 0.0771 0.62 CD4_Naive L2
ENSG00000172673 THEMIS -464610 sc-eQTL 7.20e-01 -0.0199 0.0554 0.62 CD4_Naive L2
ENSG00000214338 SOGA3 -65170 sc-eQTL 7.59e-02 -0.0934 0.0523 0.62 CD4_Naive L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 3.27e-02 0.141 0.0657 0.62 CD4_TCM L2
ENSG00000118518 RNF146 187411 sc-eQTL 6.34e-01 -0.0411 0.086 0.62 CD4_TCM L2
ENSG00000172673 THEMIS -464610 sc-eQTL 3.10e-01 0.0644 0.0633 0.62 CD4_TCM L2
ENSG00000214338 SOGA3 -65170 sc-eQTL 4.24e-01 -0.0521 0.0651 0.62 CD4_TCM L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 1.47e-01 -0.116 0.0794 0.62 CD4_TEM L2
ENSG00000118518 RNF146 187411 sc-eQTL 5.61e-02 -0.173 0.09 0.62 CD4_TEM L2
ENSG00000172673 THEMIS -464610 sc-eQTL 5.15e-01 0.0474 0.0726 0.62 CD4_TEM L2
ENSG00000214338 SOGA3 -65170 sc-eQTL 5.59e-01 -0.0439 0.0751 0.62 CD4_TEM L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 5.80e-01 -0.0443 0.0798 0.62 CD8_CTL L2
ENSG00000118518 RNF146 187411 sc-eQTL 1.69e-01 -0.13 0.0941 0.62 CD8_CTL L2
ENSG00000172673 THEMIS -464610 sc-eQTL 9.69e-01 0.00268 0.0683 0.62 CD8_CTL L2
ENSG00000227945 AL590006.1 -573865 sc-eQTL 4.01e-01 -0.057 0.0677 0.62 CD8_CTL L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 3.93e-01 0.0694 0.081 0.62 CD8_Naive L2
ENSG00000118518 RNF146 187411 sc-eQTL 6.94e-01 -0.0343 0.0869 0.62 CD8_Naive L2
ENSG00000172673 THEMIS -464610 sc-eQTL 9.92e-01 0.000577 0.0542 0.62 CD8_Naive L2
ENSG00000227945 AL590006.1 -573865 sc-eQTL 1.89e-01 0.109 0.0823 0.62 CD8_Naive L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 1.67e-01 -0.117 0.0845 0.618 CD8_TCM L2
ENSG00000118518 RNF146 187411 sc-eQTL 8.57e-01 0.0178 0.0986 0.618 CD8_TCM L2
ENSG00000172673 THEMIS -464610 sc-eQTL 9.79e-02 0.142 0.0854 0.618 CD8_TCM L2
ENSG00000227945 AL590006.1 -573865 sc-eQTL 6.44e-01 -0.0364 0.0788 0.618 CD8_TCM L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 2.10e-02 0.205 0.088 0.619 CD8_TEM L2
ENSG00000118518 RNF146 187411 sc-eQTL 6.47e-03 -0.246 0.0893 0.619 CD8_TEM L2
ENSG00000172673 THEMIS -464610 sc-eQTL 5.29e-01 -0.051 0.0807 0.619 CD8_TEM L2
ENSG00000227945 AL590006.1 -573865 sc-eQTL 1.82e-01 0.0925 0.069 0.619 CD8_TEM L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 3.66e-01 -0.0776 0.0856 0.621 MAIT L2
ENSG00000118518 RNF146 187411 sc-eQTL 6.47e-01 0.0417 0.0908 0.621 MAIT L2
ENSG00000172673 THEMIS -464610 sc-eQTL 1.32e-02 0.178 0.0714 0.621 MAIT L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 8.51e-01 -0.0168 0.0897 0.624 NK_CD56bright L2
ENSG00000118518 RNF146 187411 sc-eQTL 9.70e-01 -0.00356 0.0939 0.624 NK_CD56bright L2
ENSG00000172673 THEMIS -464610 sc-eQTL 7.57e-01 0.0211 0.0683 0.624 NK_CD56bright L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 2.44e-01 0.0837 0.0717 0.623 NK_CD56dim L2
ENSG00000118518 RNF146 187411 sc-eQTL 5.72e-01 0.0466 0.0824 0.623 NK_CD56dim L2
ENSG00000172673 THEMIS -464610 sc-eQTL 2.47e-01 -0.0945 0.0814 0.623 NK_CD56dim L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 8.61e-01 0.0161 0.0919 0.621 NK_HLA L2
ENSG00000118518 RNF146 187411 sc-eQTL 7.40e-01 -0.0315 0.0948 0.621 NK_HLA L2
ENSG00000172673 THEMIS -464610 sc-eQTL 8.23e-01 -0.0166 0.0739 0.621 NK_HLA L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 6.36e-02 0.146 0.0785 0.623 NK_cytokine L2
ENSG00000118518 RNF146 187411 sc-eQTL 8.87e-01 0.0116 0.0817 0.623 NK_cytokine L2
ENSG00000172673 THEMIS -464610 sc-eQTL 7.51e-01 -0.0245 0.0773 0.623 NK_cytokine L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 6.67e-01 -0.0407 0.0945 0.619 PB L2
ENSG00000118518 RNF146 187411 sc-eQTL 7.38e-01 0.0425 0.127 0.619 PB L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 1.25e-01 0.108 0.0701 0.617 Pro_T L2
ENSG00000118518 RNF146 187411 sc-eQTL 9.43e-01 -0.00617 0.0863 0.617 Pro_T L2
ENSG00000172673 THEMIS -464610 sc-eQTL 8.93e-01 0.00807 0.0599 0.617 Pro_T L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 3.21e-01 0.0824 0.0829 0.62 Treg L2
ENSG00000118518 RNF146 187411 sc-eQTL 2.96e-01 0.0942 0.0899 0.62 Treg L2
ENSG00000172673 THEMIS -464610 sc-eQTL 5.14e-01 0.0578 0.0884 0.62 Treg L2
ENSG00000214338 SOGA3 -65170 sc-eQTL 6.62e-01 -0.0329 0.0751 0.62 Treg L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 7.09e-01 0.0325 0.087 0.629 cDC L2
ENSG00000118518 RNF146 187411 sc-eQTL 2.13e-01 -0.12 0.0957 0.629 cDC L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 8.03e-01 -0.0147 0.059 0.62 cMono_IL1B L2
ENSG00000118518 RNF146 187411 sc-eQTL 5.35e-01 0.0434 0.0697 0.62 cMono_IL1B L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 3.56e-01 -0.0639 0.0692 0.62 cMono_S100A L2
ENSG00000118518 RNF146 187411 sc-eQTL 3.92e-01 0.0644 0.0751 0.62 cMono_S100A L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 7.91e-01 0.0259 0.0976 0.63 gdT L2
ENSG00000118518 RNF146 187411 sc-eQTL 3.17e-01 -0.0987 0.0984 0.63 gdT L2
ENSG00000172673 THEMIS -464610 sc-eQTL 2.68e-01 0.103 0.0927 0.63 gdT L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 2.84e-01 0.0837 0.0779 0.622 intMono L2
ENSG00000118518 RNF146 187411 sc-eQTL 8.30e-01 -0.0177 0.0824 0.622 intMono L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 2.70e-01 0.0899 0.0813 0.613 ncMono L2
ENSG00000118518 RNF146 187411 sc-eQTL 3.49e-01 0.0737 0.0784 0.613 ncMono L2
ENSG00000093144 ECHDC1 110412 sc-eQTL 2.55e-01 0.0934 0.0819 0.653 pDC L2
ENSG00000118518 RNF146 187411 sc-eQTL 7.90e-01 -0.0279 0.104 0.653 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 110412 sc-eQTL 9.08e-01 0.00716 0.0617 0.62 B_Memory LOneK1K
ENSG00000118518 RNF146 187411 sc-eQTL 7.32e-01 -0.0304 0.0886 0.62 B_Memory LOneK1K
ENSG00000093144 ECHDC1 110412 sc-eQTL 1.88e-02 0.11 0.0466 0.62 B_Naive LOneK1K
ENSG00000118518 RNF146 187411 sc-eQTL 3.17e-01 -0.0809 0.0807 0.62 B_Naive LOneK1K
ENSG00000093144 ECHDC1 110412 sc-eQTL 3.45e-01 -0.0508 0.0537 0.62 CD14_Mono LOneK1K
ENSG00000118518 RNF146 187411 sc-eQTL 5.30e-01 0.0403 0.0641 0.62 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 110412 sc-eQTL 2.12e-01 0.0905 0.0723 0.621 CD16_Mono LOneK1K
ENSG00000118518 RNF146 187411 sc-eQTL 2.05e-01 0.0859 0.0675 0.621 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 110412 sc-eQTL 2.12e-02 0.155 0.0665 0.623 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 187411 sc-eQTL 7.14e-01 0.0281 0.0766 0.623 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -464610 sc-eQTL 4.94e-01 -0.0564 0.0824 0.623 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 110412 eQTL 2.61e-29 -0.197 0.0169 0.0 0.0 0.35

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000093144 ECHDC1 110412 9.21e-06 1.33e-05 1.56e-06 6.41e-06 2.46e-06 4.24e-06 1.19e-05 1.81e-06 1.03e-05 4.99e-06 1.39e-05 5.61e-06 1.58e-05 3.53e-06 3.01e-06 6.49e-06 4.98e-06 7.74e-06 3.2e-06 2.82e-06 5.45e-06 9.51e-06 7.67e-06 3.35e-06 1.42e-05 3.24e-06 4.67e-06 4.68e-06 9.77e-06 7.9e-06 6.28e-06 9.5e-07 1.21e-06 2.78e-06 4.58e-06 2.13e-06 1.75e-06 1.86e-06 1.37e-06 9.77e-07 9.55e-07 1.39e-05 1.39e-06 1.88e-07 6.99e-07 1.17e-06 1.35e-06 6.66e-07 5.64e-07
ENSG00000118518 \N 187411 4.33e-06 6.3e-06 5.86e-07 3.09e-06 8.7e-07 1.33e-06 4.62e-06 1.03e-06 5.14e-06 1.91e-06 5.78e-06 3.39e-06 7.38e-06 2.24e-06 1.33e-06 2.42e-06 1.87e-06 3.4e-06 1.43e-06 1.15e-06 3.02e-06 4.49e-06 3.4e-06 1.6e-06 5.44e-06 1.28e-06 1.87e-06 1.78e-06 4.3e-06 3.64e-06 2.81e-06 5.26e-07 6.12e-07 1.74e-06 1.99e-06 9.23e-07 9.91e-07 4.24e-07 1.23e-06 3.61e-07 1.96e-07 5.65e-06 3.83e-07 1.68e-07 3.5e-07 3.67e-07 8.55e-07 2.41e-07 2.02e-07