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Genes within 1Mb (chr6:127444480:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 100871 sc-eQTL 5.63e-08 -0.368 0.0652 0.1 B L1
ENSG00000118518 RNF146 177870 sc-eQTL 8.30e-01 0.0239 0.111 0.1 B L1
ENSG00000093144 ECHDC1 100871 sc-eQTL 2.02e-01 -0.109 0.0853 0.1 CD4T L1
ENSG00000118518 RNF146 177870 sc-eQTL 9.46e-01 0.0079 0.117 0.1 CD4T L1
ENSG00000172673 THEMIS -474151 sc-eQTL 9.22e-02 -0.15 0.0886 0.1 CD4T L1
ENSG00000214338 SOGA3 -74711 sc-eQTL 6.41e-01 0.0354 0.0758 0.1 CD4T L1
ENSG00000093144 ECHDC1 100871 sc-eQTL 6.85e-01 0.0423 0.104 0.1 CD8T L1
ENSG00000118518 RNF146 177870 sc-eQTL 9.21e-01 0.0134 0.134 0.1 CD8T L1
ENSG00000172673 THEMIS -474151 sc-eQTL 5.12e-01 -0.0682 0.104 0.1 CD8T L1
ENSG00000227945 AL590006.1 -583406 sc-eQTL 5.75e-01 -0.0583 0.104 0.1 CD8T L1
ENSG00000093144 ECHDC1 100871 sc-eQTL 5.75e-02 -0.222 0.116 0.097 DC L1
ENSG00000118518 RNF146 177870 sc-eQTL 8.46e-01 0.028 0.143 0.097 DC L1
ENSG00000093144 ECHDC1 100871 sc-eQTL 5.03e-01 -0.0558 0.0833 0.1 Mono L1
ENSG00000118518 RNF146 177870 sc-eQTL 9.62e-01 -0.00443 0.0927 0.1 Mono L1
ENSG00000093144 ECHDC1 100871 sc-eQTL 7.36e-01 0.0346 0.102 0.101 NK L1
ENSG00000118518 RNF146 177870 sc-eQTL 2.83e-01 0.127 0.118 0.101 NK L1
ENSG00000172673 THEMIS -474151 sc-eQTL 8.31e-01 0.0286 0.134 0.101 NK L1
ENSG00000093144 ECHDC1 100871 sc-eQTL 2.50e-01 -0.106 0.0922 0.1 Other_T L1
ENSG00000118518 RNF146 177870 sc-eQTL 1.73e-01 -0.181 0.132 0.1 Other_T L1
ENSG00000172673 THEMIS -474151 sc-eQTL 5.51e-02 -0.185 0.0958 0.1 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 100871 sc-eQTL 8.29e-01 0.0408 0.189 0.079 B_Activated L2
ENSG00000118518 RNF146 177870 sc-eQTL 5.82e-01 -0.106 0.192 0.079 B_Activated L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 1.08e-02 -0.279 0.109 0.099 B_Intermediate L2
ENSG00000118518 RNF146 177870 sc-eQTL 5.48e-01 0.0851 0.142 0.099 B_Intermediate L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 2.97e-01 -0.132 0.126 0.099 B_Memory L2
ENSG00000118518 RNF146 177870 sc-eQTL 5.39e-01 0.0906 0.147 0.099 B_Memory L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 1.32e-04 -0.316 0.0811 0.1 B_Naive1 L2
ENSG00000118518 RNF146 177870 sc-eQTL 5.72e-01 0.0746 0.132 0.1 B_Naive1 L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 3.94e-02 -0.219 0.106 0.101 B_Naive2 L2
ENSG00000118518 RNF146 177870 sc-eQTL 7.17e-01 0.0537 0.148 0.101 B_Naive2 L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 3.81e-01 -0.133 0.151 0.098 CD4_CTL L2
ENSG00000118518 RNF146 177870 sc-eQTL 4.27e-01 -0.118 0.148 0.098 CD4_CTL L2
ENSG00000172673 THEMIS -474151 sc-eQTL 7.03e-01 0.0381 0.0999 0.098 CD4_CTL L2
ENSG00000214338 SOGA3 -74711 sc-eQTL 5.22e-01 -0.0855 0.133 0.098 CD4_CTL L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 8.27e-01 -0.0227 0.104 0.1 CD4_Naive L2
ENSG00000118518 RNF146 177870 sc-eQTL 5.95e-01 -0.066 0.124 0.1 CD4_Naive L2
ENSG00000172673 THEMIS -474151 sc-eQTL 9.96e-02 -0.146 0.0884 0.1 CD4_Naive L2
ENSG00000214338 SOGA3 -74711 sc-eQTL 2.09e-02 0.195 0.0836 0.1 CD4_Naive L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 3.35e-01 -0.104 0.108 0.1 CD4_TCM L2
ENSG00000118518 RNF146 177870 sc-eQTL 1.77e-01 0.188 0.139 0.1 CD4_TCM L2
ENSG00000172673 THEMIS -474151 sc-eQTL 3.65e-01 -0.0931 0.103 0.1 CD4_TCM L2
ENSG00000214338 SOGA3 -74711 sc-eQTL 6.93e-02 -0.192 0.105 0.1 CD4_TCM L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 8.33e-01 0.0272 0.129 0.1 CD4_TEM L2
ENSG00000118518 RNF146 177870 sc-eQTL 8.93e-01 -0.0197 0.147 0.1 CD4_TEM L2
ENSG00000172673 THEMIS -474151 sc-eQTL 7.50e-01 0.0376 0.118 0.1 CD4_TEM L2
ENSG00000214338 SOGA3 -74711 sc-eQTL 2.63e-01 -0.136 0.121 0.1 CD4_TEM L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 3.00e-01 0.13 0.125 0.1 CD8_CTL L2
ENSG00000118518 RNF146 177870 sc-eQTL 2.73e-01 0.163 0.148 0.1 CD8_CTL L2
ENSG00000172673 THEMIS -474151 sc-eQTL 5.61e-01 -0.0626 0.107 0.1 CD8_CTL L2
ENSG00000227945 AL590006.1 -583406 sc-eQTL 1.12e-01 -0.17 0.106 0.1 CD8_CTL L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 4.23e-01 0.103 0.128 0.1 CD8_Naive L2
ENSG00000118518 RNF146 177870 sc-eQTL 5.40e-01 -0.0841 0.137 0.1 CD8_Naive L2
ENSG00000172673 THEMIS -474151 sc-eQTL 4.87e-01 -0.0594 0.0854 0.1 CD8_Naive L2
ENSG00000227945 AL590006.1 -583406 sc-eQTL 3.77e-01 -0.115 0.13 0.1 CD8_Naive L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 8.70e-01 -0.0218 0.134 0.106 CD8_TCM L2
ENSG00000118518 RNF146 177870 sc-eQTL 5.63e-01 -0.0898 0.155 0.106 CD8_TCM L2
ENSG00000172673 THEMIS -474151 sc-eQTL 2.21e-03 -0.409 0.132 0.106 CD8_TCM L2
ENSG00000227945 AL590006.1 -583406 sc-eQTL 8.65e-01 0.0211 0.124 0.106 CD8_TCM L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 7.84e-02 -0.245 0.139 0.105 CD8_TEM L2
ENSG00000118518 RNF146 177870 sc-eQTL 9.23e-02 0.239 0.142 0.105 CD8_TEM L2
ENSG00000172673 THEMIS -474151 sc-eQTL 7.29e-01 -0.0439 0.127 0.105 CD8_TEM L2
ENSG00000227945 AL590006.1 -583406 sc-eQTL 1.87e-02 -0.254 0.107 0.105 CD8_TEM L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 4.98e-01 0.0928 0.137 0.102 MAIT L2
ENSG00000118518 RNF146 177870 sc-eQTL 2.45e-01 -0.169 0.145 0.102 MAIT L2
ENSG00000172673 THEMIS -474151 sc-eQTL 2.07e-01 -0.146 0.115 0.102 MAIT L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 1.25e-01 0.226 0.147 0.096 NK_CD56bright L2
ENSG00000118518 RNF146 177870 sc-eQTL 5.04e-01 0.103 0.154 0.096 NK_CD56bright L2
ENSG00000172673 THEMIS -474151 sc-eQTL 1.60e-01 -0.157 0.112 0.096 NK_CD56bright L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 4.05e-01 0.0952 0.114 0.099 NK_CD56dim L2
ENSG00000118518 RNF146 177870 sc-eQTL 5.63e-01 -0.0759 0.131 0.099 NK_CD56dim L2
ENSG00000172673 THEMIS -474151 sc-eQTL 7.86e-01 0.0352 0.13 0.099 NK_CD56dim L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 5.77e-01 0.0819 0.146 0.103 NK_HLA L2
ENSG00000118518 RNF146 177870 sc-eQTL 4.56e-01 0.113 0.151 0.103 NK_HLA L2
ENSG00000172673 THEMIS -474151 sc-eQTL 5.62e-01 0.0684 0.118 0.103 NK_HLA L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 8.52e-01 0.0233 0.125 0.099 NK_cytokine L2
ENSG00000118518 RNF146 177870 sc-eQTL 1.19e-01 0.201 0.128 0.099 NK_cytokine L2
ENSG00000172673 THEMIS -474151 sc-eQTL 7.17e-01 0.0442 0.122 0.099 NK_cytokine L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 2.54e-01 -0.177 0.154 0.1 PB L2
ENSG00000118518 RNF146 177870 sc-eQTL 9.85e-01 -0.00386 0.208 0.1 PB L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 2.74e-03 -0.339 0.112 0.1 Pro_T L2
ENSG00000118518 RNF146 177870 sc-eQTL 4.15e-01 -0.114 0.14 0.1 Pro_T L2
ENSG00000172673 THEMIS -474151 sc-eQTL 3.76e-01 -0.086 0.097 0.1 Pro_T L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 3.43e-01 -0.125 0.132 0.1 Treg L2
ENSG00000118518 RNF146 177870 sc-eQTL 3.94e-01 -0.122 0.143 0.1 Treg L2
ENSG00000172673 THEMIS -474151 sc-eQTL 6.20e-01 -0.0698 0.141 0.1 Treg L2
ENSG00000214338 SOGA3 -74711 sc-eQTL 4.42e-01 0.0918 0.119 0.1 Treg L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 1.70e-01 -0.192 0.139 0.093 cDC L2
ENSG00000118518 RNF146 177870 sc-eQTL 8.14e-01 -0.0364 0.154 0.093 cDC L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 6.14e-01 -0.0472 0.0936 0.1 cMono_IL1B L2
ENSG00000118518 RNF146 177870 sc-eQTL 9.63e-01 0.00516 0.111 0.1 cMono_IL1B L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 8.83e-01 0.0163 0.11 0.1 cMono_S100A L2
ENSG00000118518 RNF146 177870 sc-eQTL 5.23e-01 -0.0766 0.12 0.1 cMono_S100A L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 3.49e-01 -0.152 0.162 0.1 gdT L2
ENSG00000118518 RNF146 177870 sc-eQTL 3.99e-01 0.139 0.164 0.1 gdT L2
ENSG00000172673 THEMIS -474151 sc-eQTL 8.53e-01 -0.0287 0.155 0.1 gdT L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 9.22e-01 0.0124 0.127 0.096 intMono L2
ENSG00000118518 RNF146 177870 sc-eQTL 8.92e-01 0.0182 0.134 0.096 intMono L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 6.39e-01 0.0603 0.128 0.1 ncMono L2
ENSG00000118518 RNF146 177870 sc-eQTL 6.43e-01 -0.0574 0.124 0.1 ncMono L2
ENSG00000093144 ECHDC1 100871 sc-eQTL 4.26e-01 -0.107 0.134 0.088 pDC L2
ENSG00000118518 RNF146 177870 sc-eQTL 1.78e-01 0.229 0.169 0.088 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 100871 sc-eQTL 2.84e-02 -0.212 0.0961 0.1 B_Memory LOneK1K
ENSG00000118518 RNF146 177870 sc-eQTL 8.55e-01 0.0255 0.14 0.1 B_Memory LOneK1K
ENSG00000093144 ECHDC1 100871 sc-eQTL 1.40e-05 -0.322 0.0723 0.1 B_Naive LOneK1K
ENSG00000118518 RNF146 177870 sc-eQTL 4.16e-01 0.106 0.129 0.1 B_Naive LOneK1K
ENSG00000093144 ECHDC1 100871 sc-eQTL 6.81e-01 -0.0355 0.0861 0.1 CD14_Mono LOneK1K
ENSG00000118518 RNF146 177870 sc-eQTL 7.54e-01 -0.0322 0.103 0.1 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 100871 sc-eQTL 9.51e-01 0.00716 0.118 0.099 CD16_Mono LOneK1K
ENSG00000118518 RNF146 177870 sc-eQTL 8.89e-01 0.0153 0.11 0.099 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 100871 sc-eQTL 9.38e-01 0.00834 0.107 0.099 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 177870 sc-eQTL 4.03e-01 0.102 0.122 0.099 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -474151 sc-eQTL 7.90e-01 0.0349 0.131 0.099 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 100871 eQTL 6.94e-05 -0.12 0.0299 0.0 0.0 0.0819
ENSG00000146374 RSPO3 325809 pQTL 0.0111 -0.0862 0.0339 0.00136 0.0 0.0842

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000172673 \N -474151 4.37e-07 4e-07 6.41e-08 3.19e-07 1.07e-07 1.28e-07 3.42e-07 5.89e-08 2.01e-07 1.46e-07 3.66e-07 1.62e-07 3.95e-07 8.26e-08 1.01e-07 1.01e-07 6.17e-08 2.43e-07 9.69e-08 6.73e-08 1.39e-07 2.09e-07 2.04e-07 5.01e-08 3.41e-07 1.76e-07 1.29e-07 1.36e-07 1.54e-07 1.46e-07 1.71e-07 4.58e-08 3.38e-08 9.61e-08 6.98e-08 4.77e-08 7.86e-08 6.78e-08 5.95e-08 7.17e-08 5.28e-08 3.26e-07 2.47e-08 1.55e-08 5.4e-08 1.05e-08 7e-08 0.0 5.15e-08