logo

Genes within 1Mb (chr6:127430731:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 87122 sc-eQTL 3.06e-02 0.0922 0.0424 0.62 B L1
ENSG00000118518 RNF146 164121 sc-eQTL 2.55e-01 -0.0777 0.068 0.62 B L1
ENSG00000093144 ECHDC1 87122 sc-eQTL 2.28e-01 -0.0638 0.0527 0.62 CD4T L1
ENSG00000118518 RNF146 164121 sc-eQTL 6.02e-01 -0.0377 0.0722 0.62 CD4T L1
ENSG00000172673 THEMIS -487900 sc-eQTL 8.83e-01 0.00814 0.0551 0.62 CD4T L1
ENSG00000214338 SOGA3 -88460 sc-eQTL 1.07e-01 -0.0754 0.0466 0.62 CD4T L1
ENSG00000093144 ECHDC1 87122 sc-eQTL 4.33e-01 0.0509 0.0648 0.62 CD8T L1
ENSG00000118518 RNF146 164121 sc-eQTL 4.25e-02 -0.169 0.0826 0.62 CD8T L1
ENSG00000172673 THEMIS -487900 sc-eQTL 7.59e-01 0.0199 0.0648 0.62 CD8T L1
ENSG00000227945 AL590006.1 -597155 sc-eQTL 4.14e-01 0.0529 0.0647 0.62 CD8T L1
ENSG00000093144 ECHDC1 87122 sc-eQTL 4.18e-01 0.0594 0.0731 0.631 DC L1
ENSG00000118518 RNF146 164121 sc-eQTL 2.25e-01 -0.109 0.0892 0.631 DC L1
ENSG00000093144 ECHDC1 87122 sc-eQTL 8.26e-01 -0.0115 0.0521 0.62 Mono L1
ENSG00000118518 RNF146 164121 sc-eQTL 1.66e-01 0.0799 0.0576 0.62 Mono L1
ENSG00000093144 ECHDC1 87122 sc-eQTL 1.77e-02 0.151 0.063 0.62 NK L1
ENSG00000118518 RNF146 164121 sc-eQTL 8.39e-01 0.015 0.0737 0.62 NK L1
ENSG00000172673 THEMIS -487900 sc-eQTL 4.83e-01 -0.0586 0.0834 0.62 NK L1
ENSG00000093144 ECHDC1 87122 sc-eQTL 6.49e-01 -0.0272 0.0597 0.62 Other_T L1
ENSG00000118518 RNF146 164121 sc-eQTL 9.52e-01 0.00513 0.0859 0.62 Other_T L1
ENSG00000172673 THEMIS -487900 sc-eQTL 4.29e-02 0.126 0.0618 0.62 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 87122 sc-eQTL 2.31e-01 -0.121 0.101 0.625 B_Activated L2
ENSG00000118518 RNF146 164121 sc-eQTL 5.13e-01 0.0671 0.102 0.625 B_Activated L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 2.70e-01 0.0779 0.0705 0.62 B_Intermediate L2
ENSG00000118518 RNF146 164121 sc-eQTL 2.71e-01 -0.0999 0.0905 0.62 B_Intermediate L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 7.17e-01 -0.0285 0.0785 0.623 B_Memory L2
ENSG00000118518 RNF146 164121 sc-eQTL 8.25e-01 -0.0203 0.0914 0.623 B_Memory L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 2.09e-02 0.119 0.0513 0.62 B_Naive1 L2
ENSG00000118518 RNF146 164121 sc-eQTL 5.53e-02 -0.156 0.0809 0.62 B_Naive1 L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 2.12e-01 0.0842 0.0673 0.62 B_Naive2 L2
ENSG00000118518 RNF146 164121 sc-eQTL 6.53e-01 0.0421 0.0936 0.62 B_Naive2 L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 5.41e-01 -0.0578 0.0944 0.632 CD4_CTL L2
ENSG00000118518 RNF146 164121 sc-eQTL 7.58e-01 -0.0285 0.0925 0.632 CD4_CTL L2
ENSG00000172673 THEMIS -487900 sc-eQTL 7.99e-01 0.0159 0.0624 0.632 CD4_CTL L2
ENSG00000214338 SOGA3 -88460 sc-eQTL 5.44e-01 0.0507 0.0833 0.632 CD4_CTL L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 7.69e-03 -0.171 0.0634 0.62 CD4_Naive L2
ENSG00000118518 RNF146 164121 sc-eQTL 8.31e-01 0.0165 0.0771 0.62 CD4_Naive L2
ENSG00000172673 THEMIS -487900 sc-eQTL 6.57e-01 -0.0246 0.0553 0.62 CD4_Naive L2
ENSG00000214338 SOGA3 -88460 sc-eQTL 6.18e-02 -0.0981 0.0523 0.62 CD4_Naive L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 3.64e-02 0.138 0.0656 0.62 CD4_TCM L2
ENSG00000118518 RNF146 164121 sc-eQTL 3.15e-01 -0.0863 0.0857 0.62 CD4_TCM L2
ENSG00000172673 THEMIS -487900 sc-eQTL 2.71e-01 0.0697 0.0631 0.62 CD4_TCM L2
ENSG00000214338 SOGA3 -88460 sc-eQTL 4.51e-01 -0.0491 0.065 0.62 CD4_TCM L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 1.91e-01 -0.104 0.0794 0.62 CD4_TEM L2
ENSG00000118518 RNF146 164121 sc-eQTL 5.91e-02 -0.171 0.0899 0.62 CD4_TEM L2
ENSG00000172673 THEMIS -487900 sc-eQTL 5.25e-01 0.0461 0.0724 0.62 CD4_TEM L2
ENSG00000214338 SOGA3 -88460 sc-eQTL 5.67e-01 -0.0429 0.0749 0.62 CD4_TEM L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 4.41e-01 -0.0618 0.08 0.62 CD8_CTL L2
ENSG00000118518 RNF146 164121 sc-eQTL 2.07e-01 -0.12 0.0945 0.62 CD8_CTL L2
ENSG00000172673 THEMIS -487900 sc-eQTL 9.59e-01 -0.00349 0.0686 0.62 CD8_CTL L2
ENSG00000227945 AL590006.1 -597155 sc-eQTL 6.09e-01 -0.0349 0.068 0.62 CD8_CTL L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 3.56e-01 0.0748 0.0809 0.62 CD8_Naive L2
ENSG00000118518 RNF146 164121 sc-eQTL 7.16e-01 -0.0316 0.0868 0.62 CD8_Naive L2
ENSG00000172673 THEMIS -487900 sc-eQTL 9.22e-01 -0.00533 0.0541 0.62 CD8_Naive L2
ENSG00000227945 AL590006.1 -597155 sc-eQTL 1.04e-01 0.134 0.0821 0.62 CD8_Naive L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 1.75e-01 -0.115 0.0846 0.618 CD8_TCM L2
ENSG00000118518 RNF146 164121 sc-eQTL 9.43e-01 0.00704 0.0987 0.618 CD8_TCM L2
ENSG00000172673 THEMIS -487900 sc-eQTL 9.47e-02 0.143 0.0854 0.618 CD8_TCM L2
ENSG00000227945 AL590006.1 -597155 sc-eQTL 8.29e-01 -0.0171 0.0789 0.618 CD8_TCM L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 1.94e-02 0.208 0.0881 0.619 CD8_TEM L2
ENSG00000118518 RNF146 164121 sc-eQTL 9.36e-03 -0.235 0.0896 0.619 CD8_TEM L2
ENSG00000172673 THEMIS -487900 sc-eQTL 4.03e-01 -0.0677 0.0808 0.619 CD8_TEM L2
ENSG00000227945 AL590006.1 -597155 sc-eQTL 1.51e-01 0.0995 0.0691 0.619 CD8_TEM L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 3.33e-01 -0.0828 0.0854 0.621 MAIT L2
ENSG00000118518 RNF146 164121 sc-eQTL 6.72e-01 0.0385 0.0907 0.621 MAIT L2
ENSG00000172673 THEMIS -487900 sc-eQTL 1.55e-02 0.174 0.0713 0.621 MAIT L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 9.26e-01 -0.00831 0.0895 0.624 NK_CD56bright L2
ENSG00000118518 RNF146 164121 sc-eQTL 8.18e-01 -0.0216 0.0936 0.624 NK_CD56bright L2
ENSG00000172673 THEMIS -487900 sc-eQTL 9.76e-01 -0.00206 0.0681 0.624 NK_CD56bright L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 2.58e-01 0.0814 0.0718 0.623 NK_CD56dim L2
ENSG00000118518 RNF146 164121 sc-eQTL 6.54e-01 0.037 0.0825 0.623 NK_CD56dim L2
ENSG00000172673 THEMIS -487900 sc-eQTL 2.74e-01 -0.0895 0.0815 0.623 NK_CD56dim L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 8.59e-01 0.0164 0.0921 0.621 NK_HLA L2
ENSG00000118518 RNF146 164121 sc-eQTL 6.31e-01 -0.0457 0.095 0.621 NK_HLA L2
ENSG00000172673 THEMIS -487900 sc-eQTL 7.87e-01 -0.0201 0.074 0.621 NK_HLA L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 5.49e-02 0.152 0.0786 0.623 NK_cytokine L2
ENSG00000118518 RNF146 164121 sc-eQTL 9.39e-01 0.00624 0.0818 0.623 NK_cytokine L2
ENSG00000172673 THEMIS -487900 sc-eQTL 6.99e-01 -0.0299 0.0774 0.623 NK_cytokine L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 6.67e-01 -0.0407 0.0945 0.619 PB L2
ENSG00000118518 RNF146 164121 sc-eQTL 7.38e-01 0.0425 0.127 0.619 PB L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 1.39e-01 0.104 0.0701 0.617 Pro_T L2
ENSG00000118518 RNF146 164121 sc-eQTL 8.32e-01 -0.0183 0.0862 0.617 Pro_T L2
ENSG00000172673 THEMIS -487900 sc-eQTL 9.76e-01 -0.00184 0.0599 0.617 Pro_T L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 3.54e-01 0.077 0.0828 0.62 Treg L2
ENSG00000118518 RNF146 164121 sc-eQTL 2.98e-01 0.0939 0.0899 0.62 Treg L2
ENSG00000172673 THEMIS -487900 sc-eQTL 5.11e-01 0.0582 0.0884 0.62 Treg L2
ENSG00000214338 SOGA3 -88460 sc-eQTL 6.16e-01 -0.0377 0.075 0.62 Treg L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 6.84e-01 0.0358 0.0878 0.629 cDC L2
ENSG00000118518 RNF146 164121 sc-eQTL 1.93e-01 -0.126 0.0965 0.629 cDC L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 8.50e-01 -0.0112 0.0593 0.62 cMono_IL1B L2
ENSG00000118518 RNF146 164121 sc-eQTL 5.46e-01 0.0423 0.07 0.62 cMono_IL1B L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 3.53e-01 -0.0645 0.0694 0.62 cMono_S100A L2
ENSG00000118518 RNF146 164121 sc-eQTL 2.57e-01 0.0854 0.0752 0.62 cMono_S100A L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 7.84e-01 0.0268 0.0975 0.627 gdT L2
ENSG00000118518 RNF146 164121 sc-eQTL 2.87e-01 -0.105 0.0983 0.627 gdT L2
ENSG00000172673 THEMIS -487900 sc-eQTL 2.90e-01 0.0984 0.0927 0.627 gdT L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 3.49e-01 0.0732 0.078 0.622 intMono L2
ENSG00000118518 RNF146 164121 sc-eQTL 6.86e-01 -0.0334 0.0824 0.622 intMono L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 2.25e-01 0.0986 0.0811 0.613 ncMono L2
ENSG00000118518 RNF146 164121 sc-eQTL 5.03e-01 0.0525 0.0784 0.613 ncMono L2
ENSG00000093144 ECHDC1 87122 sc-eQTL 2.01e-01 0.105 0.0818 0.653 pDC L2
ENSG00000118518 RNF146 164121 sc-eQTL 6.72e-01 -0.0443 0.104 0.653 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 87122 sc-eQTL 8.45e-01 0.012 0.0617 0.62 B_Memory LOneK1K
ENSG00000118518 RNF146 164121 sc-eQTL 9.18e-01 -0.00913 0.0886 0.62 B_Memory LOneK1K
ENSG00000093144 ECHDC1 87122 sc-eQTL 4.60e-03 0.133 0.0463 0.62 B_Naive LOneK1K
ENSG00000118518 RNF146 164121 sc-eQTL 1.78e-01 -0.109 0.0806 0.62 B_Naive LOneK1K
ENSG00000093144 ECHDC1 87122 sc-eQTL 3.70e-01 -0.0485 0.054 0.62 CD14_Mono LOneK1K
ENSG00000118518 RNF146 164121 sc-eQTL 4.34e-01 0.0504 0.0643 0.62 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 87122 sc-eQTL 2.28e-01 0.0872 0.0721 0.621 CD16_Mono LOneK1K
ENSG00000118518 RNF146 164121 sc-eQTL 3.23e-01 0.0668 0.0674 0.621 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 87122 sc-eQTL 1.97e-02 0.156 0.0666 0.623 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 164121 sc-eQTL 8.06e-01 0.0189 0.0767 0.623 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -487900 sc-eQTL 4.64e-01 -0.0604 0.0824 0.623 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 87122 eQTL 1.31e-29 -0.197 0.0169 0.0 0.0 0.349

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000093144 ECHDC1 87122 5.68e-06 9.33e-06 8.36e-07 3.51e-06 1.64e-06 1.56e-06 7.61e-06 1.03e-06 4.5e-06 2.97e-06 8.05e-06 3.27e-06 1.06e-05 2.19e-06 1.06e-06 3.73e-06 2.78e-06 3.99e-06 1.45e-06 1.15e-06 3.09e-06 5.49e-06 4.73e-06 1.43e-06 8.97e-06 2.05e-06 2.41e-06 1.77e-06 4.94e-06 6.54e-06 3.46e-06 4.56e-07 7.51e-07 1.85e-06 1.96e-06 9.08e-07 9.13e-07 4.4e-07 9.42e-07 5.75e-07 1.51e-07 8.32e-06 6.59e-07 1.85e-07 4.35e-07 7.44e-07 8.3e-07 2.15e-07 1.57e-07
ENSG00000118518 \N 164121 3.24e-06 4.55e-06 2.31e-07 1.97e-06 4.61e-07 8.45e-07 2.29e-06 5.79e-07 2.17e-06 9.63e-07 3.09e-06 1.4e-06 5.21e-06 1.36e-06 9.28e-07 1.19e-06 1.58e-06 2.2e-06 1.08e-06 1.15e-06 9.45e-07 3.02e-06 2.51e-06 1.02e-06 4.06e-06 1.27e-06 1.19e-06 1.51e-06 2.07e-06 2.55e-06 1.91e-06 2.43e-07 3.99e-07 1.14e-06 1.02e-06 6.14e-07 7.53e-07 4.13e-07 9.39e-07 3.96e-07 3.03e-07 4.17e-06 6.36e-07 2.07e-07 3.65e-07 3.08e-07 2.66e-07 6.02e-08 1.58e-07