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Genes within 1Mb (chr6:127231080:T:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 -112529 sc-eQTL 1.70e-01 0.0605 0.0439 0.524 B L1
ENSG00000118518 RNF146 -35530 sc-eQTL 2.04e-01 -0.0892 0.07 0.524 B L1
ENSG00000203760 CENPW 890906 sc-eQTL 5.89e-01 -0.0376 0.0693 0.524 B L1
ENSG00000093144 ECHDC1 -112529 sc-eQTL 4.98e-01 -0.0372 0.0548 0.524 CD4T L1
ENSG00000118518 RNF146 -35530 sc-eQTL 4.16e-01 0.0609 0.0748 0.524 CD4T L1
ENSG00000172673 THEMIS -687551 sc-eQTL 9.11e-01 -0.00638 0.0572 0.524 CD4T L1
ENSG00000214338 SOGA3 -288111 sc-eQTL 3.27e-01 -0.0477 0.0485 0.524 CD4T L1
ENSG00000093144 ECHDC1 -112529 sc-eQTL 1.31e-01 0.104 0.0682 0.524 CD8T L1
ENSG00000118518 RNF146 -35530 sc-eQTL 2.22e-01 -0.108 0.0878 0.524 CD8T L1
ENSG00000172673 THEMIS -687551 sc-eQTL 2.60e-01 0.0771 0.0683 0.524 CD8T L1
ENSG00000227945 AL590006.1 -796806 sc-eQTL 1.93e-01 0.089 0.0682 0.524 CD8T L1
ENSG00000093144 ECHDC1 -112529 sc-eQTL 5.45e-01 0.0452 0.0745 0.532 DC L1
ENSG00000118518 RNF146 -35530 sc-eQTL 1.25e-01 -0.14 0.0906 0.532 DC L1
ENSG00000203760 CENPW 890906 sc-eQTL 4.22e-03 0.242 0.0836 0.532 DC L1
ENSG00000093144 ECHDC1 -112529 sc-eQTL 6.47e-01 -0.0248 0.0541 0.524 Mono L1
ENSG00000118518 RNF146 -35530 sc-eQTL 7.38e-01 0.0202 0.0602 0.524 Mono L1
ENSG00000203760 CENPW 890906 sc-eQTL 9.95e-01 0.000428 0.0735 0.524 Mono L1
ENSG00000093144 ECHDC1 -112529 sc-eQTL 1.68e-01 0.0925 0.0669 0.524 NK L1
ENSG00000118518 RNF146 -35530 sc-eQTL 6.46e-01 -0.0357 0.0777 0.524 NK L1
ENSG00000172673 THEMIS -687551 sc-eQTL 9.74e-01 0.00287 0.0879 0.524 NK L1
ENSG00000093144 ECHDC1 -112529 sc-eQTL 8.44e-01 0.0121 0.0615 0.524 Other_T L1
ENSG00000118518 RNF146 -35530 sc-eQTL 6.69e-01 -0.0378 0.0883 0.524 Other_T L1
ENSG00000172673 THEMIS -687551 sc-eQTL 2.42e-02 0.144 0.0634 0.524 Other_T L1
ENSG00000203760 CENPW 890906 sc-eQTL 7.71e-01 -0.0151 0.0518 0.524 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 -112529 sc-eQTL 1.56e-01 -0.149 0.104 0.526 B_Activated L2
ENSG00000118518 RNF146 -35530 sc-eQTL 9.30e-01 0.00933 0.107 0.526 B_Activated L2
ENSG00000203760 CENPW 890906 sc-eQTL 1.78e-02 0.175 0.0729 0.526 B_Activated L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 6.42e-01 0.0335 0.072 0.524 B_Intermediate L2
ENSG00000118518 RNF146 -35530 sc-eQTL 3.48e-04 -0.326 0.0897 0.524 B_Intermediate L2
ENSG00000203760 CENPW 890906 sc-eQTL 3.92e-01 -0.0792 0.0923 0.524 B_Intermediate L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 8.18e-01 0.0185 0.0805 0.528 B_Memory L2
ENSG00000118518 RNF146 -35530 sc-eQTL 8.65e-01 -0.0159 0.0936 0.528 B_Memory L2
ENSG00000203760 CENPW 890906 sc-eQTL 6.71e-02 0.16 0.0871 0.528 B_Memory L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 2.16e-02 0.122 0.0526 0.524 B_Naive1 L2
ENSG00000118518 RNF146 -35530 sc-eQTL 2.03e-01 -0.107 0.0834 0.524 B_Naive1 L2
ENSG00000203760 CENPW 890906 sc-eQTL 9.96e-01 0.000493 0.0902 0.524 B_Naive1 L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 9.68e-01 0.00276 0.0692 0.526 B_Naive2 L2
ENSG00000118518 RNF146 -35530 sc-eQTL 4.54e-01 0.0719 0.0958 0.526 B_Naive2 L2
ENSG00000203760 CENPW 890906 sc-eQTL 6.94e-01 -0.0326 0.0829 0.526 B_Naive2 L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 6.00e-01 -0.0507 0.0965 0.532 CD4_CTL L2
ENSG00000118518 RNF146 -35530 sc-eQTL 1.50e-01 0.136 0.0941 0.532 CD4_CTL L2
ENSG00000172673 THEMIS -687551 sc-eQTL 4.10e-01 0.0526 0.0637 0.532 CD4_CTL L2
ENSG00000214338 SOGA3 -288111 sc-eQTL 7.49e-01 0.0273 0.0852 0.532 CD4_CTL L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 6.46e-02 -0.124 0.0667 0.524 CD4_Naive L2
ENSG00000118518 RNF146 -35530 sc-eQTL 5.02e-01 0.054 0.0803 0.524 CD4_Naive L2
ENSG00000172673 THEMIS -687551 sc-eQTL 8.48e-01 -0.0111 0.0577 0.524 CD4_Naive L2
ENSG00000214338 SOGA3 -288111 sc-eQTL 6.04e-02 -0.103 0.0545 0.524 CD4_Naive L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 1.86e-01 0.0925 0.0698 0.524 CD4_TCM L2
ENSG00000118518 RNF146 -35530 sc-eQTL 8.37e-01 0.0187 0.0908 0.524 CD4_TCM L2
ENSG00000172673 THEMIS -687551 sc-eQTL 9.93e-01 0.000628 0.067 0.524 CD4_TCM L2
ENSG00000214338 SOGA3 -288111 sc-eQTL 4.90e-01 -0.0476 0.0688 0.524 CD4_TCM L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 1.90e-01 -0.108 0.0821 0.524 CD4_TEM L2
ENSG00000118518 RNF146 -35530 sc-eQTL 1.23e-01 -0.144 0.0933 0.524 CD4_TEM L2
ENSG00000172673 THEMIS -687551 sc-eQTL 2.19e-01 0.0922 0.0748 0.524 CD4_TEM L2
ENSG00000214338 SOGA3 -288111 sc-eQTL 1.66e-01 0.107 0.0773 0.524 CD4_TEM L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 9.78e-01 -0.00231 0.0838 0.524 CD8_CTL L2
ENSG00000118518 RNF146 -35530 sc-eQTL 3.00e-01 -0.103 0.0989 0.524 CD8_CTL L2
ENSG00000172673 THEMIS -687551 sc-eQTL 1.08e-01 0.115 0.0712 0.524 CD8_CTL L2
ENSG00000227945 AL590006.1 -796806 sc-eQTL 2.64e-01 0.0794 0.071 0.524 CD8_CTL L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 3.32e-02 0.181 0.0844 0.524 CD8_Naive L2
ENSG00000118518 RNF146 -35530 sc-eQTL 6.29e-01 -0.0443 0.0914 0.524 CD8_Naive L2
ENSG00000172673 THEMIS -687551 sc-eQTL 6.53e-01 0.0256 0.0569 0.524 CD8_Naive L2
ENSG00000227945 AL590006.1 -796806 sc-eQTL 1.67e-01 0.12 0.0865 0.524 CD8_Naive L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 6.46e-01 -0.0403 0.0878 0.521 CD8_TCM L2
ENSG00000118518 RNF146 -35530 sc-eQTL 5.95e-01 0.0542 0.102 0.521 CD8_TCM L2
ENSG00000172673 THEMIS -687551 sc-eQTL 1.89e-01 0.117 0.0885 0.521 CD8_TCM L2
ENSG00000227945 AL590006.1 -796806 sc-eQTL 9.88e-01 -0.0012 0.0815 0.521 CD8_TCM L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 6.46e-01 0.0416 0.0903 0.523 CD8_TEM L2
ENSG00000118518 RNF146 -35530 sc-eQTL 1.21e-01 -0.143 0.0916 0.523 CD8_TEM L2
ENSG00000172673 THEMIS -687551 sc-eQTL 6.62e-01 0.0358 0.0818 0.523 CD8_TEM L2
ENSG00000227945 AL590006.1 -796806 sc-eQTL 8.81e-02 0.119 0.0697 0.523 CD8_TEM L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 5.91e-01 -0.047 0.0874 0.524 MAIT L2
ENSG00000118518 RNF146 -35530 sc-eQTL 8.56e-01 -0.0169 0.0926 0.524 MAIT L2
ENSG00000172673 THEMIS -687551 sc-eQTL 1.09e-01 0.118 0.0734 0.524 MAIT L2
ENSG00000203760 CENPW 890906 sc-eQTL 7.98e-02 -0.13 0.0741 0.524 MAIT L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 9.19e-01 -0.00941 0.0924 0.531 NK_CD56bright L2
ENSG00000118518 RNF146 -35530 sc-eQTL 7.21e-01 0.0346 0.0967 0.531 NK_CD56bright L2
ENSG00000172673 THEMIS -687551 sc-eQTL 8.60e-01 0.0124 0.0703 0.531 NK_CD56bright L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 8.73e-01 0.012 0.0748 0.526 NK_CD56dim L2
ENSG00000118518 RNF146 -35530 sc-eQTL 3.32e-01 0.0832 0.0856 0.526 NK_CD56dim L2
ENSG00000172673 THEMIS -687551 sc-eQTL 4.94e-01 -0.0581 0.0849 0.526 NK_CD56dim L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 4.94e-01 0.0653 0.0954 0.53 NK_HLA L2
ENSG00000118518 RNF146 -35530 sc-eQTL 1.86e-02 -0.231 0.0972 0.53 NK_HLA L2
ENSG00000172673 THEMIS -687551 sc-eQTL 5.77e-01 0.0429 0.0767 0.53 NK_HLA L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 6.73e-01 0.035 0.0829 0.526 NK_cytokine L2
ENSG00000118518 RNF146 -35530 sc-eQTL 1.86e-01 -0.113 0.0852 0.526 NK_cytokine L2
ENSG00000172673 THEMIS -687551 sc-eQTL 7.18e-01 0.0292 0.0809 0.526 NK_cytokine L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 9.26e-01 0.00891 0.0963 0.53 PB L2
ENSG00000118518 RNF146 -35530 sc-eQTL 5.79e-02 0.243 0.127 0.53 PB L2
ENSG00000203760 CENPW 890906 sc-eQTL 1.85e-01 -0.114 0.0857 0.53 PB L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 1.38e-01 0.108 0.0723 0.52 Pro_T L2
ENSG00000118518 RNF146 -35530 sc-eQTL 9.67e-01 -0.00373 0.0889 0.52 Pro_T L2
ENSG00000172673 THEMIS -687551 sc-eQTL 4.74e-01 0.0443 0.0617 0.52 Pro_T L2
ENSG00000203760 CENPW 890906 sc-eQTL 5.32e-01 -0.0301 0.048 0.52 Pro_T L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 6.75e-01 0.0361 0.0861 0.524 Treg L2
ENSG00000118518 RNF146 -35530 sc-eQTL 3.26e-01 0.0919 0.0932 0.524 Treg L2
ENSG00000172673 THEMIS -687551 sc-eQTL 8.54e-01 -0.0169 0.0917 0.524 Treg L2
ENSG00000214338 SOGA3 -288111 sc-eQTL 7.99e-02 0.136 0.0773 0.524 Treg L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 8.44e-01 0.0172 0.0873 0.537 cDC L2
ENSG00000118518 RNF146 -35530 sc-eQTL 6.79e-02 -0.176 0.0956 0.537 cDC L2
ENSG00000203760 CENPW 890906 sc-eQTL 1.19e-01 0.142 0.0906 0.537 cDC L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 7.40e-01 -0.0203 0.0608 0.524 cMono_IL1B L2
ENSG00000118518 RNF146 -35530 sc-eQTL 5.20e-01 -0.0464 0.0719 0.524 cMono_IL1B L2
ENSG00000203760 CENPW 890906 sc-eQTL 5.48e-01 0.0477 0.0792 0.524 cMono_IL1B L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 3.05e-01 -0.0729 0.071 0.524 cMono_S100A L2
ENSG00000118518 RNF146 -35530 sc-eQTL 6.05e-01 -0.0399 0.0771 0.524 cMono_S100A L2
ENSG00000203760 CENPW 890906 sc-eQTL 7.79e-01 -0.0242 0.0862 0.524 cMono_S100A L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 5.20e-01 -0.0681 0.106 0.539 gdT L2
ENSG00000118518 RNF146 -35530 sc-eQTL 3.78e-02 -0.221 0.105 0.539 gdT L2
ENSG00000172673 THEMIS -687551 sc-eQTL 2.00e-01 0.129 0.1 0.539 gdT L2
ENSG00000203760 CENPW 890906 sc-eQTL 6.18e-01 0.0501 0.1 0.539 gdT L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 3.15e-01 0.0811 0.0805 0.524 intMono L2
ENSG00000118518 RNF146 -35530 sc-eQTL 1.71e-01 0.116 0.0848 0.524 intMono L2
ENSG00000203760 CENPW 890906 sc-eQTL 7.11e-01 -0.0336 0.0905 0.524 intMono L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 8.38e-01 -0.0175 0.0855 0.525 ncMono L2
ENSG00000118518 RNF146 -35530 sc-eQTL 7.85e-01 0.0225 0.0824 0.525 ncMono L2
ENSG00000203760 CENPW 890906 sc-eQTL 1.76e-01 0.121 0.089 0.525 ncMono L2
ENSG00000093144 ECHDC1 -112529 sc-eQTL 1.44e-01 0.126 0.0858 0.568 pDC L2
ENSG00000118518 RNF146 -35530 sc-eQTL 2.87e-01 -0.117 0.109 0.568 pDC L2
ENSG00000203760 CENPW 890906 sc-eQTL 3.40e-01 0.102 0.107 0.568 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 -112529 sc-eQTL 8.73e-01 -0.01 0.0624 0.524 B_Memory LOneK1K
ENSG00000118518 RNF146 -35530 sc-eQTL 7.32e-02 -0.16 0.0889 0.524 B_Memory LOneK1K
ENSG00000203760 CENPW 890906 sc-eQTL 2.70e-01 0.105 0.0945 0.524 B_Memory LOneK1K
ENSG00000093144 ECHDC1 -112529 sc-eQTL 1.26e-02 0.12 0.0477 0.524 B_Naive LOneK1K
ENSG00000118518 RNF146 -35530 sc-eQTL 5.04e-01 -0.0554 0.0828 0.524 B_Naive LOneK1K
ENSG00000203760 CENPW 890906 sc-eQTL 7.20e-01 -0.0316 0.0883 0.524 B_Naive LOneK1K
ENSG00000093144 ECHDC1 -112529 sc-eQTL 3.77e-01 -0.0492 0.0555 0.524 CD14_Mono LOneK1K
ENSG00000118518 RNF146 -35530 sc-eQTL 4.00e-01 -0.0558 0.0661 0.524 CD14_Mono LOneK1K
ENSG00000203760 CENPW 890906 sc-eQTL 8.36e-01 0.0168 0.0807 0.524 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 -112529 sc-eQTL 4.11e-01 0.0628 0.0763 0.526 CD16_Mono LOneK1K
ENSG00000118518 RNF146 -35530 sc-eQTL 9.93e-02 0.117 0.0709 0.526 CD16_Mono LOneK1K
ENSG00000203760 CENPW 890906 sc-eQTL 6.37e-01 0.0385 0.0816 0.526 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 -112529 sc-eQTL 1.57e-01 0.101 0.0709 0.526 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 -35530 sc-eQTL 5.00e-01 -0.0547 0.081 0.526 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -687551 sc-eQTL 8.42e-01 -0.0174 0.0872 0.526 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000093144 ECHDC1 -112529 eQTL 3.2e-32 -0.202 0.0164 0.0 0.0 0.425

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000093144 ECHDC1 -112529 4.62e-06 4.65e-06 6.9e-07 2.61e-06 1.63e-06 1.57e-06 4.31e-06 1.09e-06 5.16e-06 2.45e-06 4.91e-06 3.54e-06 7.07e-06 2.38e-06 1.39e-06 3.81e-06 1.81e-06 3.53e-06 1.54e-06 1.18e-06 3.15e-06 4.85e-06 4.46e-06 1.71e-06 5.89e-06 1.96e-06 2.55e-06 1.77e-06 4.46e-06 4.25e-06 2.53e-06 4.18e-07 6.32e-07 2.1e-06 2.26e-06 1.17e-06 1.08e-06 4.4e-07 8.84e-07 5.77e-07 8.23e-07 5.54e-06 4.01e-07 1.68e-07 7.49e-07 9.83e-07 1.13e-06 6.9e-07 5.29e-07