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Genes within 1Mb (chr6:127124474:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 -219135 sc-eQTL 2.28e-02 0.174 0.0758 0.09 B L1
ENSG00000118518 RNF146 -142136 sc-eQTL 3.62e-01 0.111 0.122 0.09 B L1
ENSG00000203760 CENPW 784300 sc-eQTL 8.26e-01 0.0265 0.121 0.09 B L1
ENSG00000093144 ECHDC1 -219135 sc-eQTL 4.55e-01 -0.0687 0.0917 0.09 CD4T L1
ENSG00000118518 RNF146 -142136 sc-eQTL 4.28e-01 -0.0994 0.125 0.09 CD4T L1
ENSG00000172673 THEMIS -794157 sc-eQTL 6.43e-02 -0.177 0.0949 0.09 CD4T L1
ENSG00000214338 SOGA3 -394717 sc-eQTL 2.47e-01 -0.0941 0.0811 0.09 CD4T L1
ENSG00000093144 ECHDC1 -219135 sc-eQTL 8.72e-02 -0.191 0.111 0.09 CD8T L1
ENSG00000118518 RNF146 -142136 sc-eQTL 4.93e-01 -0.0983 0.143 0.09 CD8T L1
ENSG00000172673 THEMIS -794157 sc-eQTL 2.03e-01 -0.142 0.111 0.09 CD8T L1
ENSG00000227945 AL590006.1 -903412 sc-eQTL 9.83e-01 0.00235 0.111 0.09 CD8T L1
ENSG00000093144 ECHDC1 -219135 sc-eQTL 4.73e-01 0.0907 0.126 0.083 DC L1
ENSG00000118518 RNF146 -142136 sc-eQTL 2.64e-01 -0.172 0.154 0.083 DC L1
ENSG00000203760 CENPW 784300 sc-eQTL 5.30e-01 -0.0908 0.144 0.083 DC L1
ENSG00000093144 ECHDC1 -219135 sc-eQTL 1.11e-01 0.14 0.0874 0.09 Mono L1
ENSG00000118518 RNF146 -142136 sc-eQTL 7.37e-01 -0.0328 0.0976 0.09 Mono L1
ENSG00000203760 CENPW 784300 sc-eQTL 3.71e-01 -0.107 0.119 0.09 Mono L1
ENSG00000093144 ECHDC1 -219135 sc-eQTL 5.24e-01 -0.0698 0.109 0.09 NK L1
ENSG00000118518 RNF146 -142136 sc-eQTL 1.25e-02 -0.314 0.125 0.09 NK L1
ENSG00000172673 THEMIS -794157 sc-eQTL 9.58e-01 0.00753 0.143 0.09 NK L1
ENSG00000093144 ECHDC1 -219135 sc-eQTL 6.90e-01 0.04 0.1 0.09 Other_T L1
ENSG00000118518 RNF146 -142136 sc-eQTL 9.67e-01 0.00595 0.144 0.09 Other_T L1
ENSG00000172673 THEMIS -794157 sc-eQTL 6.92e-01 0.0415 0.105 0.09 Other_T L1
ENSG00000203760 CENPW 784300 sc-eQTL 6.29e-01 -0.0407 0.0843 0.09 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 -219135 sc-eQTL 7.90e-01 -0.0454 0.17 0.089 B_Activated L2
ENSG00000118518 RNF146 -142136 sc-eQTL 6.64e-01 0.0752 0.173 0.089 B_Activated L2
ENSG00000203760 CENPW 784300 sc-eQTL 6.68e-01 0.0516 0.12 0.089 B_Activated L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 1.00e-01 0.2 0.121 0.09 B_Intermediate L2
ENSG00000118518 RNF146 -142136 sc-eQTL 7.42e-01 0.0517 0.157 0.09 B_Intermediate L2
ENSG00000203760 CENPW 784300 sc-eQTL 9.45e-01 -0.0108 0.157 0.09 B_Intermediate L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 8.91e-01 -0.0187 0.136 0.086 B_Memory L2
ENSG00000118518 RNF146 -142136 sc-eQTL 5.38e-01 -0.0976 0.158 0.086 B_Memory L2
ENSG00000203760 CENPW 784300 sc-eQTL 7.50e-01 -0.0474 0.148 0.086 B_Memory L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 8.44e-02 0.157 0.0906 0.09 B_Naive1 L2
ENSG00000118518 RNF146 -142136 sc-eQTL 3.22e-01 0.142 0.143 0.09 B_Naive1 L2
ENSG00000203760 CENPW 784300 sc-eQTL 5.86e-01 0.0841 0.154 0.09 B_Naive1 L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 1.50e-02 0.279 0.114 0.088 B_Naive2 L2
ENSG00000118518 RNF146 -142136 sc-eQTL 7.73e-01 0.0463 0.16 0.088 B_Naive2 L2
ENSG00000203760 CENPW 784300 sc-eQTL 8.86e-01 0.0198 0.139 0.088 B_Naive2 L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 1.73e-01 0.211 0.155 0.095 CD4_CTL L2
ENSG00000118518 RNF146 -142136 sc-eQTL 3.11e-01 0.154 0.152 0.095 CD4_CTL L2
ENSG00000172673 THEMIS -794157 sc-eQTL 3.73e-01 -0.0915 0.102 0.095 CD4_CTL L2
ENSG00000214338 SOGA3 -394717 sc-eQTL 8.21e-01 0.031 0.137 0.095 CD4_CTL L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 1.08e-01 -0.178 0.111 0.09 CD4_Naive L2
ENSG00000118518 RNF146 -142136 sc-eQTL 2.03e-01 -0.169 0.132 0.09 CD4_Naive L2
ENSG00000172673 THEMIS -794157 sc-eQTL 2.74e-01 -0.104 0.0952 0.09 CD4_Naive L2
ENSG00000214338 SOGA3 -394717 sc-eQTL 8.31e-02 -0.157 0.0902 0.09 CD4_Naive L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 1.91e-01 0.152 0.116 0.09 CD4_TCM L2
ENSG00000118518 RNF146 -142136 sc-eQTL 4.79e-01 -0.107 0.15 0.09 CD4_TCM L2
ENSG00000172673 THEMIS -794157 sc-eQTL 5.01e-01 -0.0749 0.111 0.09 CD4_TCM L2
ENSG00000214338 SOGA3 -394717 sc-eQTL 4.76e-01 -0.0815 0.114 0.09 CD4_TCM L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 2.80e-01 -0.145 0.134 0.09 CD4_TEM L2
ENSG00000118518 RNF146 -142136 sc-eQTL 2.25e-01 -0.185 0.152 0.09 CD4_TEM L2
ENSG00000172673 THEMIS -794157 sc-eQTL 6.46e-02 -0.225 0.121 0.09 CD4_TEM L2
ENSG00000214338 SOGA3 -394717 sc-eQTL 7.98e-01 -0.0324 0.126 0.09 CD4_TEM L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 8.43e-01 0.0269 0.136 0.09 CD8_CTL L2
ENSG00000118518 RNF146 -142136 sc-eQTL 5.21e-01 -0.103 0.161 0.09 CD8_CTL L2
ENSG00000172673 THEMIS -794157 sc-eQTL 4.96e-01 -0.0791 0.116 0.09 CD8_CTL L2
ENSG00000227945 AL590006.1 -903412 sc-eQTL 6.11e-01 -0.0588 0.115 0.09 CD8_CTL L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 1.25e-01 -0.211 0.137 0.09 CD8_Naive L2
ENSG00000118518 RNF146 -142136 sc-eQTL 6.24e-01 -0.0726 0.148 0.09 CD8_Naive L2
ENSG00000172673 THEMIS -794157 sc-eQTL 3.57e-01 -0.0849 0.0919 0.09 CD8_Naive L2
ENSG00000227945 AL590006.1 -903412 sc-eQTL 8.81e-01 0.021 0.141 0.09 CD8_Naive L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 2.72e-01 0.162 0.147 0.088 CD8_TCM L2
ENSG00000118518 RNF146 -142136 sc-eQTL 5.36e-01 0.106 0.171 0.088 CD8_TCM L2
ENSG00000172673 THEMIS -794157 sc-eQTL 1.51e-01 0.214 0.148 0.088 CD8_TCM L2
ENSG00000227945 AL590006.1 -903412 sc-eQTL 5.41e-01 -0.0835 0.137 0.088 CD8_TCM L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 2.34e-02 0.34 0.149 0.094 CD8_TEM L2
ENSG00000118518 RNF146 -142136 sc-eQTL 9.59e-01 -0.00784 0.154 0.094 CD8_TEM L2
ENSG00000172673 THEMIS -794157 sc-eQTL 6.35e-01 0.0649 0.136 0.094 CD8_TEM L2
ENSG00000227945 AL590006.1 -903412 sc-eQTL 3.71e-01 -0.105 0.117 0.094 CD8_TEM L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 8.93e-01 -0.0193 0.144 0.091 MAIT L2
ENSG00000118518 RNF146 -142136 sc-eQTL 4.04e-01 -0.127 0.152 0.091 MAIT L2
ENSG00000172673 THEMIS -794157 sc-eQTL 9.92e-01 0.00117 0.121 0.091 MAIT L2
ENSG00000203760 CENPW 784300 sc-eQTL 8.02e-01 0.0307 0.122 0.091 MAIT L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 2.39e-02 -0.337 0.148 0.093 NK_CD56bright L2
ENSG00000118518 RNF146 -142136 sc-eQTL 5.67e-01 0.0898 0.157 0.093 NK_CD56bright L2
ENSG00000172673 THEMIS -794157 sc-eQTL 9.95e-01 0.000662 0.114 0.093 NK_CD56bright L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 5.31e-01 -0.0775 0.124 0.091 NK_CD56dim L2
ENSG00000118518 RNF146 -142136 sc-eQTL 2.00e-03 -0.434 0.139 0.091 NK_CD56dim L2
ENSG00000172673 THEMIS -794157 sc-eQTL 7.76e-01 0.0401 0.14 0.091 NK_CD56dim L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 1.10e-01 0.253 0.158 0.089 NK_HLA L2
ENSG00000118518 RNF146 -142136 sc-eQTL 7.04e-01 -0.0622 0.164 0.089 NK_HLA L2
ENSG00000172673 THEMIS -794157 sc-eQTL 8.31e-01 -0.0272 0.128 0.089 NK_HLA L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 9.52e-01 0.00816 0.135 0.091 NK_cytokine L2
ENSG00000118518 RNF146 -142136 sc-eQTL 7.91e-01 -0.0368 0.139 0.091 NK_cytokine L2
ENSG00000172673 THEMIS -794157 sc-eQTL 4.75e-01 -0.0938 0.131 0.091 NK_cytokine L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 4.05e-01 0.13 0.156 0.093 PB L2
ENSG00000118518 RNF146 -142136 sc-eQTL 5.52e-01 0.124 0.209 0.093 PB L2
ENSG00000203760 CENPW 784300 sc-eQTL 3.58e-01 0.129 0.139 0.093 PB L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 7.85e-01 -0.034 0.124 0.091 Pro_T L2
ENSG00000118518 RNF146 -142136 sc-eQTL 8.82e-01 -0.0225 0.152 0.091 Pro_T L2
ENSG00000172673 THEMIS -794157 sc-eQTL 1.85e-01 0.14 0.105 0.091 Pro_T L2
ENSG00000203760 CENPW 784300 sc-eQTL 1.26e-02 -0.204 0.0809 0.091 Pro_T L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 2.53e-01 0.165 0.144 0.09 Treg L2
ENSG00000118518 RNF146 -142136 sc-eQTL 3.21e-01 0.155 0.156 0.09 Treg L2
ENSG00000172673 THEMIS -794157 sc-eQTL 4.04e-01 -0.128 0.153 0.09 Treg L2
ENSG00000214338 SOGA3 -394717 sc-eQTL 8.54e-01 -0.024 0.13 0.09 Treg L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 4.85e-01 0.103 0.147 0.09 cDC L2
ENSG00000118518 RNF146 -142136 sc-eQTL 4.98e-01 -0.11 0.162 0.09 cDC L2
ENSG00000203760 CENPW 784300 sc-eQTL 2.23e-01 -0.187 0.153 0.09 cDC L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 1.85e-01 0.132 0.0993 0.09 cMono_IL1B L2
ENSG00000118518 RNF146 -142136 sc-eQTL 2.46e-01 -0.137 0.117 0.09 cMono_IL1B L2
ENSG00000203760 CENPW 784300 sc-eQTL 8.48e-02 -0.223 0.129 0.09 cMono_IL1B L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 2.01e-01 0.151 0.118 0.09 cMono_S100A L2
ENSG00000118518 RNF146 -142136 sc-eQTL 7.91e-01 0.034 0.128 0.09 cMono_S100A L2
ENSG00000203760 CENPW 784300 sc-eQTL 5.08e-01 0.095 0.143 0.09 cMono_S100A L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 2.75e-01 -0.199 0.181 0.085 gdT L2
ENSG00000118518 RNF146 -142136 sc-eQTL 7.84e-01 -0.0506 0.184 0.085 gdT L2
ENSG00000172673 THEMIS -794157 sc-eQTL 5.36e-01 0.108 0.173 0.085 gdT L2
ENSG00000203760 CENPW 784300 sc-eQTL 4.06e-01 -0.144 0.172 0.085 gdT L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 5.39e-01 -0.0818 0.133 0.089 intMono L2
ENSG00000118518 RNF146 -142136 sc-eQTL 1.35e-01 0.21 0.14 0.089 intMono L2
ENSG00000203760 CENPW 784300 sc-eQTL 2.39e-01 0.176 0.149 0.089 intMono L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 2.37e-01 0.165 0.139 0.09 ncMono L2
ENSG00000118518 RNF146 -142136 sc-eQTL 9.19e-01 0.0137 0.134 0.09 ncMono L2
ENSG00000203760 CENPW 784300 sc-eQTL 8.90e-01 -0.0202 0.146 0.09 ncMono L2
ENSG00000093144 ECHDC1 -219135 sc-eQTL 9.49e-01 -0.00847 0.133 0.096 pDC L2
ENSG00000118518 RNF146 -142136 sc-eQTL 8.36e-01 0.0352 0.169 0.096 pDC L2
ENSG00000203760 CENPW 784300 sc-eQTL 7.17e-01 -0.06 0.165 0.096 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000093144 ECHDC1 -219135 sc-eQTL 5.62e-01 0.0601 0.104 0.09 B_Memory LOneK1K
ENSG00000118518 RNF146 -142136 sc-eQTL 7.68e-01 0.044 0.149 0.09 B_Memory LOneK1K
ENSG00000203760 CENPW 784300 sc-eQTL 6.94e-01 -0.062 0.157 0.09 B_Memory LOneK1K
ENSG00000093144 ECHDC1 -219135 sc-eQTL 1.33e-03 0.264 0.081 0.09 B_Naive LOneK1K
ENSG00000118518 RNF146 -142136 sc-eQTL 3.42e-01 0.135 0.142 0.09 B_Naive LOneK1K
ENSG00000203760 CENPW 784300 sc-eQTL 5.13e-01 0.0993 0.151 0.09 B_Naive LOneK1K
ENSG00000093144 ECHDC1 -219135 sc-eQTL 8.20e-02 0.158 0.0904 0.09 CD14_Mono LOneK1K
ENSG00000118518 RNF146 -142136 sc-eQTL 5.98e-01 -0.0572 0.108 0.09 CD14_Mono LOneK1K
ENSG00000203760 CENPW 784300 sc-eQTL 2.04e-01 -0.168 0.132 0.09 CD14_Mono LOneK1K
ENSG00000093144 ECHDC1 -219135 sc-eQTL 2.96e-01 0.13 0.124 0.088 CD16_Mono LOneK1K
ENSG00000118518 RNF146 -142136 sc-eQTL 2.27e-01 0.14 0.116 0.088 CD16_Mono LOneK1K
ENSG00000203760 CENPW 784300 sc-eQTL 4.80e-01 0.094 0.133 0.088 CD16_Mono LOneK1K
ENSG00000093144 ECHDC1 -219135 sc-eQTL 9.50e-01 -0.00721 0.115 0.091 NK_CD56dim LOneK1K
ENSG00000118518 RNF146 -142136 sc-eQTL 8.02e-03 -0.345 0.129 0.091 NK_CD56dim LOneK1K
ENSG00000172673 THEMIS -794157 sc-eQTL 7.53e-01 -0.0445 0.141 0.091 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000118518 RNF146 -142136 eQTL 0.00892 -0.0556 0.0212 0.0 0.0 0.0883
ENSG00000172673 THEMIS -794157 eQTL 0.0799 -0.046 0.0262 0.00102 0.0 0.0883

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000118518 RNF146 -142136 4.29e-06 5.67e-06 3.22e-07 3.37e-06 4.72e-07 1.33e-06 3.07e-06 8.37e-07 4.57e-06 1.43e-06 4.19e-06 3.11e-06 7.69e-06 1.8e-06 1.3e-06 1.62e-06 1.98e-06 2.12e-06 1.32e-06 9.86e-07 1.41e-06 3.43e-06 3.49e-06 1.8e-06 5.3e-06 1.09e-06 1.49e-06 1.72e-06 3.8e-06 3.97e-06 2.62e-06 3.4e-07 6.45e-07 1.61e-06 2.05e-06 9.48e-07 9.07e-07 4.08e-07 1.23e-06 4.28e-07 1.52e-07 5.76e-06 5.89e-07 1.74e-07 3.48e-07 3.57e-07 6.24e-07 1.57e-07 2.41e-07