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Genes within 1Mb (chr6:125487047:G:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000066651 TRMT11 -499432 sc-eQTL 2.21e-01 0.251 0.204 0.056 B_Activated L2
ENSG00000111906 HDDC2 184969 sc-eQTL 1.86e-01 0.273 0.205 0.056 B_Activated L2
ENSG00000111911 HINT3 -469723 sc-eQTL 2.42e-01 -0.23 0.195 0.056 B_Activated L2
ENSG00000111912 NCOA7 -294114 sc-eQTL 2.62e-01 0.221 0.197 0.056 B_Activated L2
ENSG00000203760 CENPW -853127 sc-eQTL 9.67e-01 0.00621 0.151 0.056 B_Activated L2
ENSG00000066651 TRMT11 -499432 sc-eQTL 6.83e-01 0.0816 0.199 0.05 CD4_CTL L2
ENSG00000111906 HDDC2 184969 sc-eQTL 3.53e-01 -0.182 0.196 0.05 CD4_CTL L2
ENSG00000111911 HINT3 -469723 sc-eQTL 9.61e-01 0.00952 0.194 0.05 CD4_CTL L2
ENSG00000111912 NCOA7 -294114 sc-eQTL 5.39e-01 -0.125 0.203 0.05 CD4_CTL L2
ENSG00000066651 TRMT11 -499432 sc-eQTL 9.26e-01 0.0196 0.211 0.05 CD8_TEM L2
ENSG00000111906 HDDC2 184969 sc-eQTL 1.70e-01 -0.254 0.185 0.05 CD8_TEM L2
ENSG00000111911 HINT3 -469723 sc-eQTL 2.93e-02 -0.458 0.208 0.05 CD8_TEM L2
ENSG00000111912 NCOA7 -294114 sc-eQTL 1.72e-02 0.47 0.196 0.05 CD8_TEM L2
ENSG00000066651 TRMT11 -499432 sc-eQTL 1.18e-01 -0.292 0.186 0.053 NK_HLA L2
ENSG00000111906 HDDC2 184969 sc-eQTL 6.14e-01 -0.0958 0.19 0.053 NK_HLA L2
ENSG00000111911 HINT3 -469723 sc-eQTL 6.76e-01 -0.0824 0.197 0.053 NK_HLA L2
ENSG00000111912 NCOA7 -294114 sc-eQTL 5.30e-01 -0.124 0.198 0.053 NK_HLA L2
ENSG00000066651 TRMT11 -499432 sc-eQTL 8.64e-02 -0.312 0.181 0.052 ncMono L2
ENSG00000111906 HDDC2 184969 sc-eQTL 7.70e-01 -0.0545 0.186 0.052 ncMono L2
ENSG00000111911 HINT3 -469723 sc-eQTL 8.86e-01 0.0277 0.193 0.052 ncMono L2
ENSG00000111912 NCOA7 -294114 sc-eQTL 7.74e-01 -0.0498 0.174 0.052 ncMono L2
ENSG00000146373 RNF217 524502 sc-eQTL 4.49e-01 0.134 0.177 0.052 ncMono L2
ENSG00000203760 CENPW -853127 sc-eQTL 3.14e-01 -0.182 0.18 0.052 ncMono L2
ENSG00000066651 TRMT11 -499432 sc-eQTL 7.06e-02 -0.392 0.215 0.051 pDC L2
ENSG00000111906 HDDC2 184969 sc-eQTL 4.62e-01 0.175 0.238 0.051 pDC L2
ENSG00000111911 HINT3 -469723 sc-eQTL 9.43e-01 0.0162 0.227 0.051 pDC L2
ENSG00000111912 NCOA7 -294114 sc-eQTL 1.75e-01 0.292 0.214 0.051 pDC L2
ENSG00000146373 RNF217 524502 sc-eQTL 2.16e-01 0.211 0.17 0.051 pDC L2
ENSG00000203760 CENPW -853127 sc-eQTL 8.27e-01 0.0508 0.231 0.051 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111906 HDDC2 184969 pQTL 0.00668 -0.121 0.0447 0.0 0.0 0.0556
ENSG00000135547 HEY2 -260617 eQTL 0.0401 0.164 0.0799 0.00188 0.0 0.0564

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000203760 \N -853127 1.24e-06 1.84e-06 3.2e-07 1.28e-06 1.14e-07 4.73e-07 1.41e-06 2.98e-07 1.66e-06 4.48e-07 1.85e-06 8.26e-07 2.56e-06 1.44e-06 5.05e-07 8.19e-07 8.54e-07 6.96e-07 5.36e-07 4.13e-07 2.55e-07 1.6e-06 8.26e-07 5.53e-07 2.45e-06 3.71e-07 6.81e-07 6e-07 9.73e-07 1.28e-06 7.69e-07 3.51e-08 5.58e-08 6.94e-07 5.64e-07 2.13e-07 2.98e-07 6.78e-08 4.82e-07 2.37e-07 5.56e-08 1.91e-06 6.21e-08 2.64e-08 1.81e-07 1.71e-07 9.98e-08 8.82e-08 5.54e-08