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Genes within 1Mb (chr12:99710601:CA:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075089 ACTR6 -488521 sc-eQTL 5.56e-01 0.0442 0.0749 0.472 B L1
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 4.81e-02 -0.125 0.063 0.472 B L1
ENSG00000136021 SCYL2 -556539 sc-eQTL 4.37e-01 -0.0492 0.0633 0.472 B L1
ENSG00000075089 ACTR6 -488521 sc-eQTL 6.39e-01 0.0274 0.0583 0.472 CD4T L1
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 8.84e-01 0.00795 0.0543 0.472 CD4T L1
ENSG00000136021 SCYL2 -556539 sc-eQTL 9.17e-01 -0.00485 0.0464 0.472 CD4T L1
ENSG00000075089 ACTR6 -488521 sc-eQTL 2.75e-01 -0.0701 0.0641 0.472 CD8T L1
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 9.93e-02 0.105 0.0632 0.472 CD8T L1
ENSG00000136021 SCYL2 -556539 sc-eQTL 4.18e-01 -0.0482 0.0595 0.472 CD8T L1
ENSG00000075089 ACTR6 -488521 sc-eQTL 1.15e-01 0.132 0.0837 0.466 DC L1
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 5.59e-01 0.0475 0.0812 0.466 DC L1
ENSG00000136021 SCYL2 -556539 sc-eQTL 4.99e-01 -0.0609 0.0899 0.466 DC L1
ENSG00000139354 GAS2L3 -863082 sc-eQTL 8.31e-01 -0.0179 0.0837 0.466 DC L1
ENSG00000075089 ACTR6 -488521 sc-eQTL 9.67e-01 0.00302 0.0727 0.472 Mono L1
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 6.24e-02 0.111 0.0593 0.472 Mono L1
ENSG00000136021 SCYL2 -556539 sc-eQTL 9.77e-01 -0.00181 0.0624 0.472 Mono L1
ENSG00000139354 GAS2L3 -863082 sc-eQTL 4.17e-01 -0.0473 0.0583 0.472 Mono L1
ENSG00000075089 ACTR6 -488521 sc-eQTL 5.08e-01 -0.0445 0.0671 0.474 NK L1
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 2.27e-01 -0.0668 0.0552 0.474 NK L1
ENSG00000136021 SCYL2 -556539 sc-eQTL 4.41e-02 -0.114 0.0564 0.474 NK L1
ENSG00000075089 ACTR6 -488521 sc-eQTL 7.89e-01 -0.0214 0.08 0.472 Other_T L1
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 9.31e-01 0.00657 0.0759 0.472 Other_T L1
ENSG00000136021 SCYL2 -556539 sc-eQTL 8.71e-01 -0.0114 0.07 0.472 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075089 ACTR6 -488521 sc-eQTL 3.01e-01 -0.102 0.0981 0.459 B_Activated L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 6.61e-01 0.0462 0.105 0.459 B_Activated L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 1.09e-01 0.158 0.0981 0.459 B_Activated L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 7.89e-01 -0.023 0.086 0.472 B_Intermediate L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 4.21e-01 -0.0739 0.0916 0.472 B_Intermediate L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 5.98e-01 -0.0397 0.0752 0.472 B_Intermediate L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 9.12e-01 0.01 0.0909 0.468 B_Memory L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 7.35e-01 0.0297 0.0876 0.468 B_Memory L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 4.14e-01 0.0649 0.0793 0.468 B_Memory L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 5.11e-01 0.0531 0.0807 0.472 B_Naive1 L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 7.38e-02 -0.138 0.0768 0.472 B_Naive1 L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 1.79e-01 -0.0981 0.0728 0.472 B_Naive1 L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 8.79e-01 -0.0139 0.0911 0.47 B_Naive2 L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 3.10e-01 -0.0887 0.0871 0.47 B_Naive2 L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 9.46e-01 -0.00577 0.0853 0.47 B_Naive2 L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 8.55e-01 -0.0164 0.0899 0.466 CD4_CTL L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 5.68e-01 0.051 0.089 0.466 CD4_CTL L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 3.96e-01 0.0747 0.0878 0.466 CD4_CTL L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 1.98e-01 0.0855 0.0663 0.472 CD4_Naive L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 9.65e-01 0.00279 0.0628 0.472 CD4_Naive L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 3.28e-01 -0.0545 0.0556 0.472 CD4_Naive L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 9.77e-02 -0.117 0.0703 0.472 CD4_TCM L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 8.05e-01 -0.0184 0.0744 0.472 CD4_TCM L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 7.27e-01 0.022 0.0631 0.472 CD4_TCM L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 1.26e-01 0.124 0.0808 0.472 CD4_TEM L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 2.82e-01 0.0866 0.0803 0.472 CD4_TEM L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 6.02e-01 0.0427 0.0817 0.472 CD4_TEM L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 9.45e-01 0.00514 0.0748 0.472 CD8_CTL L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 3.81e-02 0.158 0.0758 0.472 CD8_CTL L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 6.23e-01 -0.0371 0.0754 0.472 CD8_CTL L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 6.42e-01 -0.0341 0.0731 0.472 CD8_Naive L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 4.62e-01 0.0577 0.0783 0.472 CD8_Naive L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 8.41e-01 0.0141 0.0698 0.472 CD8_Naive L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 3.45e-01 -0.0804 0.0849 0.463 CD8_TCM L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 9.91e-01 0.000973 0.091 0.463 CD8_TCM L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 4.82e-01 -0.0635 0.0901 0.463 CD8_TCM L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 3.51e-01 -0.0809 0.0866 0.475 CD8_TEM L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 4.50e-01 0.0704 0.093 0.475 CD8_TEM L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 5.12e-01 -0.0624 0.0949 0.475 CD8_TEM L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 2.91e-01 0.0959 0.0905 0.47 MAIT L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 8.21e-01 -0.0191 0.0841 0.47 MAIT L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 1.53e-01 0.113 0.0785 0.47 MAIT L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 7.18e-01 0.0322 0.0888 0.473 NK_CD56bright L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 3.41e-01 -0.081 0.0849 0.473 NK_CD56bright L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 5.86e-01 0.0467 0.0855 0.473 NK_CD56bright L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 8.13e-01 0.0186 0.0788 0.476 NK_CD56dim L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 4.76e-01 -0.048 0.0672 0.476 NK_CD56dim L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 1.09e-01 -0.114 0.0706 0.476 NK_CD56dim L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 3.93e-01 -0.0787 0.0919 0.47 NK_HLA L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 8.75e-01 -0.0146 0.0928 0.47 NK_HLA L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 4.40e-01 0.0734 0.0948 0.47 NK_HLA L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 4.38e-01 -0.0615 0.0791 0.476 NK_cytokine L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 4.30e-01 -0.0583 0.0736 0.476 NK_cytokine L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 2.60e-01 -0.0781 0.0692 0.476 NK_cytokine L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 5.35e-01 0.0734 0.118 0.452 PB L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 1.46e-02 0.274 0.111 0.452 PB L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 2.90e-01 -0.128 0.12 0.452 PB L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 5.86e-01 0.0484 0.0887 0.474 Pro_T L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 7.39e-01 0.0295 0.0885 0.474 Pro_T L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 6.22e-01 -0.0426 0.0864 0.474 Pro_T L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 7.39e-01 0.0284 0.0854 0.472 Treg L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 7.80e-01 -0.0245 0.0875 0.472 Treg L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 8.91e-01 0.0113 0.0828 0.472 Treg L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 2.07e-01 0.11 0.0866 0.471 cDC L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 1.78e-01 0.123 0.0909 0.471 cDC L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 5.35e-01 -0.0541 0.087 0.471 cDC L2
ENSG00000139354 GAS2L3 -863082 sc-eQTL 6.83e-01 0.0352 0.086 0.471 cDC L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 4.26e-01 0.0597 0.0749 0.472 cMono_IL1B L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 8.31e-02 0.104 0.0598 0.472 cMono_IL1B L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 5.10e-01 -0.0482 0.073 0.472 cMono_IL1B L2
ENSG00000139354 GAS2L3 -863082 sc-eQTL 6.49e-01 -0.029 0.0636 0.472 cMono_IL1B L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 2.19e-01 -0.104 0.084 0.472 cMono_S100A L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 5.63e-01 0.0459 0.0791 0.472 cMono_S100A L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 6.05e-01 0.0415 0.0801 0.472 cMono_S100A L2
ENSG00000139354 GAS2L3 -863082 sc-eQTL 4.26e-01 -0.0632 0.0792 0.472 cMono_S100A L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 2.63e-01 -0.12 0.107 0.461 gdT L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 9.01e-01 0.0134 0.108 0.461 gdT L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 7.24e-03 -0.289 0.106 0.461 gdT L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 3.01e-01 -0.0919 0.0886 0.467 intMono L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 2.02e-01 0.115 0.09 0.467 intMono L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 6.85e-01 -0.0365 0.0901 0.467 intMono L2
ENSG00000139354 GAS2L3 -863082 sc-eQTL 6.85e-01 -0.0337 0.0832 0.467 intMono L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 3.24e-01 0.0842 0.0851 0.477 ncMono L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 5.77e-01 0.0472 0.0846 0.477 ncMono L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 3.19e-01 0.0872 0.0874 0.477 ncMono L2
ENSG00000139354 GAS2L3 -863082 sc-eQTL 3.07e-01 -0.0762 0.0744 0.477 ncMono L2
ENSG00000075089 ACTR6 -488521 sc-eQTL 6.69e-01 0.0408 0.0953 0.497 pDC L2
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 9.23e-01 0.00886 0.092 0.497 pDC L2
ENSG00000136021 SCYL2 -556539 sc-eQTL 5.13e-01 -0.0655 0.1 0.497 pDC L2
ENSG00000139354 GAS2L3 -863082 sc-eQTL 2.71e-01 -0.0892 0.0808 0.497 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000075089 ACTR6 -488521 sc-eQTL 5.06e-01 -0.056 0.0841 0.472 B_Memory LOneK1K
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 1.63e-01 -0.117 0.0835 0.472 B_Memory LOneK1K
ENSG00000136021 SCYL2 -556539 sc-eQTL 8.92e-01 -0.00896 0.0657 0.472 B_Memory LOneK1K
ENSG00000075089 ACTR6 -488521 sc-eQTL 7.41e-01 0.0266 0.0804 0.472 B_Naive LOneK1K
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 6.41e-02 -0.135 0.0724 0.472 B_Naive LOneK1K
ENSG00000136021 SCYL2 -556539 sc-eQTL 2.32e-01 -0.0861 0.0718 0.472 B_Naive LOneK1K
ENSG00000075089 ACTR6 -488521 sc-eQTL 8.22e-01 0.0165 0.073 0.472 CD14_Mono LOneK1K
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 6.68e-02 0.106 0.0574 0.472 CD14_Mono LOneK1K
ENSG00000136021 SCYL2 -556539 sc-eQTL 7.12e-01 -0.024 0.065 0.472 CD14_Mono LOneK1K
ENSG00000139354 GAS2L3 -863082 sc-eQTL 4.14e-01 -0.051 0.0623 0.472 CD14_Mono LOneK1K
ENSG00000075089 ACTR6 -488521 sc-eQTL 9.91e-01 -0.000995 0.0852 0.474 CD16_Mono LOneK1K
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 1.64e-01 0.111 0.0794 0.474 CD16_Mono LOneK1K
ENSG00000136021 SCYL2 -556539 sc-eQTL 6.87e-01 0.0319 0.0789 0.474 CD16_Mono LOneK1K
ENSG00000139354 GAS2L3 -863082 sc-eQTL 5.60e-01 -0.0445 0.0761 0.474 CD16_Mono LOneK1K
ENSG00000075089 ACTR6 -488521 sc-eQTL 4.23e-01 -0.0556 0.0692 0.476 NK_CD56dim LOneK1K
ENSG00000111647 UHRF1BP1L -432273 sc-eQTL 2.67e-01 -0.0646 0.058 0.476 NK_CD56dim LOneK1K
ENSG00000136021 SCYL2 -556539 sc-eQTL 3.90e-02 -0.121 0.0583 0.476 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000075089 ACTR6 -488521 eQTL 0.0402 0.0314 0.0153 0.0 0.0 0.499

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina