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Genes within 1Mb (chr12:97199718:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 799238 sc-eQTL 5.17e-01 -0.0304 0.0468 0.684 B L1
ENSG00000139350 NEDD1 292495 sc-eQTL 8.90e-01 -0.0114 0.0821 0.684 B L1
ENSG00000059758 CDK17 799238 sc-eQTL 8.92e-01 -0.00533 0.0391 0.684 CD4T L1
ENSG00000139350 NEDD1 292495 sc-eQTL 6.38e-01 -0.0295 0.0626 0.684 CD4T L1
ENSG00000059758 CDK17 799238 sc-eQTL 8.57e-01 -0.00719 0.0398 0.684 CD8T L1
ENSG00000139350 NEDD1 292495 sc-eQTL 8.11e-01 -0.0168 0.07 0.684 CD8T L1
ENSG00000059758 CDK17 799238 sc-eQTL 1.30e-01 0.111 0.0732 0.678 DC L1
ENSG00000139350 NEDD1 292495 sc-eQTL 1.95e-01 0.116 0.0892 0.678 DC L1
ENSG00000059758 CDK17 799238 sc-eQTL 8.95e-02 0.102 0.06 0.684 Mono L1
ENSG00000139350 NEDD1 292495 sc-eQTL 1.28e-02 0.207 0.0823 0.684 Mono L1
ENSG00000059758 CDK17 799238 sc-eQTL 2.75e-01 0.0486 0.0445 0.682 NK L1
ENSG00000139350 NEDD1 292495 sc-eQTL 3.38e-01 -0.0723 0.0752 0.682 NK L1
ENSG00000059758 CDK17 799238 sc-eQTL 7.05e-01 -0.0145 0.0382 0.684 Other_T L1
ENSG00000139350 NEDD1 292495 sc-eQTL 5.69e-02 0.167 0.0873 0.684 Other_T L1
ENSG00000188596 CFAP54 710147 sc-eQTL 1.89e-01 0.12 0.0909 0.684 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 799238 sc-eQTL 9.54e-02 -0.14 0.0835 0.679 B_Activated L2
ENSG00000139350 NEDD1 292495 sc-eQTL 2.69e-01 -0.11 0.0992 0.679 B_Activated L2
ENSG00000059758 CDK17 799238 sc-eQTL 8.56e-01 -0.0132 0.0725 0.682 B_Intermediate L2
ENSG00000139350 NEDD1 292495 sc-eQTL 9.34e-01 0.00765 0.0923 0.682 B_Intermediate L2
ENSG00000059758 CDK17 799238 sc-eQTL 7.40e-01 -0.0236 0.0709 0.683 B_Memory L2
ENSG00000139350 NEDD1 292495 sc-eQTL 9.76e-01 -0.00284 0.0943 0.683 B_Memory L2
ENSG00000059758 CDK17 799238 sc-eQTL 3.16e-02 -0.126 0.0581 0.684 B_Naive1 L2
ENSG00000139350 NEDD1 292495 sc-eQTL 4.18e-01 -0.0735 0.0906 0.684 B_Naive1 L2
ENSG00000059758 CDK17 799238 sc-eQTL 4.14e-01 0.0602 0.0735 0.685 B_Naive2 L2
ENSG00000139350 NEDD1 292495 sc-eQTL 3.46e-01 0.0916 0.097 0.685 B_Naive2 L2
ENSG00000059758 CDK17 799238 sc-eQTL 6.02e-01 -0.0366 0.07 0.677 CD4_CTL L2
ENSG00000139350 NEDD1 292495 sc-eQTL 7.10e-01 -0.0375 0.101 0.677 CD4_CTL L2
ENSG00000059758 CDK17 799238 sc-eQTL 5.79e-01 0.0237 0.0426 0.684 CD4_Naive L2
ENSG00000139350 NEDD1 292495 sc-eQTL 1.63e-01 -0.094 0.0671 0.684 CD4_Naive L2
ENSG00000059758 CDK17 799238 sc-eQTL 3.58e-01 0.038 0.0413 0.684 CD4_TCM L2
ENSG00000139350 NEDD1 292495 sc-eQTL 4.35e-01 0.0604 0.0773 0.684 CD4_TCM L2
ENSG00000059758 CDK17 799238 sc-eQTL 9.16e-01 0.00542 0.0514 0.684 CD4_TEM L2
ENSG00000139350 NEDD1 292495 sc-eQTL 5.54e-01 0.0542 0.0915 0.684 CD4_TEM L2
ENSG00000059758 CDK17 799238 sc-eQTL 7.56e-01 -0.0156 0.0502 0.684 CD8_CTL L2
ENSG00000139350 NEDD1 292495 sc-eQTL 7.83e-01 -0.0235 0.0852 0.684 CD8_CTL L2
ENSG00000059758 CDK17 799238 sc-eQTL 2.76e-01 0.0651 0.0596 0.684 CD8_Naive L2
ENSG00000139350 NEDD1 292495 sc-eQTL 7.45e-01 0.0264 0.0811 0.684 CD8_Naive L2
ENSG00000059758 CDK17 799238 sc-eQTL 5.44e-01 0.0398 0.0656 0.683 CD8_TCM L2
ENSG00000139350 NEDD1 292495 sc-eQTL 5.15e-01 0.06 0.092 0.683 CD8_TCM L2
ENSG00000059758 CDK17 799238 sc-eQTL 5.20e-01 0.0547 0.0849 0.683 CD8_TEM L2
ENSG00000139350 NEDD1 292495 sc-eQTL 9.82e-01 -0.00238 0.103 0.683 CD8_TEM L2
ENSG00000059758 CDK17 799238 sc-eQTL 4.77e-01 -0.0388 0.0545 0.682 MAIT L2
ENSG00000139350 NEDD1 292495 sc-eQTL 6.02e-01 0.048 0.092 0.682 MAIT L2
ENSG00000188596 CFAP54 710147 sc-eQTL 1.67e-01 0.126 0.0909 0.682 MAIT L2
ENSG00000059758 CDK17 799238 sc-eQTL 9.30e-02 0.0944 0.056 0.68 NK_CD56bright L2
ENSG00000139350 NEDD1 292495 sc-eQTL 7.93e-01 -0.0245 0.0934 0.68 NK_CD56bright L2
ENSG00000059758 CDK17 799238 sc-eQTL 2.31e-01 0.0575 0.0479 0.681 NK_CD56dim L2
ENSG00000139350 NEDD1 292495 sc-eQTL 3.35e-01 -0.0812 0.0841 0.681 NK_CD56dim L2
ENSG00000059758 CDK17 799238 sc-eQTL 7.84e-01 0.0209 0.0759 0.683 NK_HLA L2
ENSG00000139350 NEDD1 292495 sc-eQTL 8.39e-01 0.0185 0.091 0.683 NK_HLA L2
ENSG00000059758 CDK17 799238 sc-eQTL 2.26e-01 0.0638 0.0524 0.681 NK_cytokine L2
ENSG00000139350 NEDD1 292495 sc-eQTL 8.74e-01 0.0141 0.0892 0.681 NK_cytokine L2
ENSG00000059758 CDK17 799238 sc-eQTL 9.34e-01 -0.00826 0.1 0.689 PB L2
ENSG00000139350 NEDD1 292495 sc-eQTL 7.34e-01 0.0448 0.131 0.689 PB L2
ENSG00000059758 CDK17 799238 sc-eQTL 5.07e-01 0.0395 0.0594 0.685 Pro_T L2
ENSG00000139350 NEDD1 292495 sc-eQTL 9.37e-03 0.224 0.0855 0.685 Pro_T L2
ENSG00000188596 CFAP54 710147 sc-eQTL 6.62e-01 0.0308 0.0703 0.685 Pro_T L2
ENSG00000059758 CDK17 799238 sc-eQTL 5.28e-01 -0.0403 0.0638 0.684 Treg L2
ENSG00000139350 NEDD1 292495 sc-eQTL 3.39e-01 -0.0906 0.0945 0.684 Treg L2
ENSG00000059758 CDK17 799238 sc-eQTL 9.16e-01 0.00844 0.0796 0.661 cDC L2
ENSG00000139350 NEDD1 292495 sc-eQTL 7.49e-01 0.0305 0.0955 0.661 cDC L2
ENSG00000059758 CDK17 799238 sc-eQTL 6.04e-02 0.13 0.069 0.684 cMono_IL1B L2
ENSG00000139350 NEDD1 292495 sc-eQTL 5.23e-02 0.174 0.0889 0.684 cMono_IL1B L2
ENSG00000059758 CDK17 799238 sc-eQTL 3.18e-01 0.0792 0.0791 0.684 cMono_S100A L2
ENSG00000139350 NEDD1 292495 sc-eQTL 8.64e-01 -0.0165 0.0965 0.684 cMono_S100A L2
ENSG00000059758 CDK17 799238 sc-eQTL 7.47e-01 0.0239 0.0739 0.667 gdT L2
ENSG00000139350 NEDD1 292495 sc-eQTL 8.04e-02 0.19 0.108 0.667 gdT L2
ENSG00000188596 CFAP54 710147 sc-eQTL 3.59e-01 0.0877 0.0954 0.667 gdT L2
ENSG00000059758 CDK17 799238 sc-eQTL 3.45e-01 0.0842 0.0889 0.684 intMono L2
ENSG00000139350 NEDD1 292495 sc-eQTL 5.16e-02 0.177 0.0906 0.684 intMono L2
ENSG00000059758 CDK17 799238 sc-eQTL 1.37e-01 -0.104 0.0696 0.674 ncMono L2
ENSG00000139350 NEDD1 292495 sc-eQTL 6.84e-02 0.147 0.0804 0.674 ncMono L2
ENSG00000059758 CDK17 799238 sc-eQTL 2.85e-01 0.099 0.0922 0.672 pDC L2
ENSG00000139350 NEDD1 292495 sc-eQTL 1.68e-01 0.142 0.102 0.672 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 799238 sc-eQTL 9.33e-01 -0.00513 0.0606 0.684 B_Memory LOneK1K
ENSG00000139350 NEDD1 292495 sc-eQTL 8.95e-01 -0.012 0.0914 0.684 B_Memory LOneK1K
ENSG00000059758 CDK17 799238 sc-eQTL 2.21e-01 -0.0642 0.0523 0.684 B_Naive LOneK1K
ENSG00000139350 NEDD1 292495 sc-eQTL 7.18e-01 -0.0323 0.0893 0.684 B_Naive LOneK1K
ENSG00000059758 CDK17 799238 sc-eQTL 4.96e-02 0.123 0.0622 0.684 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 292495 sc-eQTL 2.49e-01 0.105 0.091 0.684 CD14_Mono LOneK1K
ENSG00000059758 CDK17 799238 sc-eQTL 6.04e-01 -0.0336 0.0647 0.683 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 292495 sc-eQTL 3.86e-03 0.238 0.0814 0.683 CD16_Mono LOneK1K
ENSG00000059758 CDK17 799238 sc-eQTL 4.96e-01 0.0308 0.0451 0.681 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 292495 sc-eQTL 4.62e-01 -0.0565 0.0766 0.681 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000258177 \N 975745 2.67e-07 1.3e-07 4.98e-08 1.82e-07 9.79e-08 9.9e-08 1.61e-07 5.53e-08 1.45e-07 5.67e-08 1.52e-07 1.05e-07 1.52e-07 7.13e-08 6.12e-08 7.5e-08 4.09e-08 1.33e-07 5.97e-08 4.31e-08 1.21e-07 1.24e-07 1.45e-07 2.93e-08 1.5e-07 1.25e-07 1.1e-07 9.74e-08 1.16e-07 1.07e-07 9.92e-08 3.66e-08 3.66e-08 8.23e-08 7.02e-08 3.53e-08 4.99e-08 9.3e-08 6.37e-08 3.8e-08 5.43e-08 1.36e-07 5.22e-08 2.4e-08 4.92e-08 1.84e-08 1.19e-07 3.8e-09 4.88e-08