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Genes within 1Mb (chr12:97108901:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 708421 sc-eQTL 6.67e-02 -0.0849 0.0461 0.69 B L1
ENSG00000111145 ELK3 914526 sc-eQTL 4.02e-01 -0.0515 0.0613 0.69 B L1
ENSG00000139350 NEDD1 201678 sc-eQTL 4.11e-01 0.0669 0.0813 0.69 B L1
ENSG00000059758 CDK17 708421 sc-eQTL 1.99e-01 -0.049 0.0381 0.69 CD4T L1
ENSG00000111145 ELK3 914526 sc-eQTL 5.73e-01 0.0321 0.0568 0.69 CD4T L1
ENSG00000139350 NEDD1 201678 sc-eQTL 5.00e-01 0.0414 0.0612 0.69 CD4T L1
ENSG00000059758 CDK17 708421 sc-eQTL 4.79e-01 -0.0281 0.0396 0.69 CD8T L1
ENSG00000111145 ELK3 914526 sc-eQTL 1.03e-01 0.104 0.0636 0.69 CD8T L1
ENSG00000139350 NEDD1 201678 sc-eQTL 8.22e-01 0.0157 0.0697 0.69 CD8T L1
ENSG00000059758 CDK17 708421 sc-eQTL 8.51e-01 0.0138 0.0732 0.685 DC L1
ENSG00000111145 ELK3 914526 sc-eQTL 6.66e-01 -0.0361 0.0834 0.685 DC L1
ENSG00000139350 NEDD1 201678 sc-eQTL 3.94e-01 0.076 0.0889 0.685 DC L1
ENSG00000059758 CDK17 708421 sc-eQTL 3.85e-01 0.0519 0.0596 0.69 Mono L1
ENSG00000111145 ELK3 914526 sc-eQTL 4.85e-01 0.0398 0.057 0.69 Mono L1
ENSG00000139350 NEDD1 201678 sc-eQTL 8.28e-04 -0.273 0.0804 0.69 Mono L1
ENSG00000059758 CDK17 708421 sc-eQTL 9.09e-01 0.00495 0.0432 0.689 NK L1
ENSG00000111145 ELK3 914526 sc-eQTL 6.92e-01 0.0276 0.0695 0.689 NK L1
ENSG00000139350 NEDD1 201678 sc-eQTL 6.76e-01 -0.0305 0.073 0.689 NK L1
ENSG00000059758 CDK17 708421 sc-eQTL 3.23e-01 -0.0365 0.0369 0.69 Other_T L1
ENSG00000111145 ELK3 914526 sc-eQTL 3.07e-01 0.0616 0.0601 0.69 Other_T L1
ENSG00000139350 NEDD1 201678 sc-eQTL 2.53e-01 0.0974 0.085 0.69 Other_T L1
ENSG00000188596 CFAP54 619330 sc-eQTL 4.85e-01 -0.0617 0.0882 0.69 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 708421 sc-eQTL 2.90e-01 -0.0907 0.0855 0.694 B_Activated L2
ENSG00000111145 ELK3 914526 sc-eQTL 8.32e-01 0.0218 0.103 0.694 B_Activated L2
ENSG00000139350 NEDD1 201678 sc-eQTL 5.22e-01 -0.065 0.101 0.694 B_Activated L2
ENSG00000059758 CDK17 708421 sc-eQTL 4.28e-01 -0.0571 0.0719 0.691 B_Intermediate L2
ENSG00000111145 ELK3 914526 sc-eQTL 1.41e-01 -0.116 0.0782 0.691 B_Intermediate L2
ENSG00000139350 NEDD1 201678 sc-eQTL 5.98e-01 -0.0484 0.0916 0.691 B_Intermediate L2
ENSG00000059758 CDK17 708421 sc-eQTL 5.11e-01 -0.0463 0.0703 0.692 B_Memory L2
ENSG00000111145 ELK3 914526 sc-eQTL 1.02e-01 -0.13 0.0793 0.692 B_Memory L2
ENSG00000139350 NEDD1 201678 sc-eQTL 9.86e-01 0.00164 0.0936 0.692 B_Memory L2
ENSG00000059758 CDK17 708421 sc-eQTL 7.05e-03 -0.156 0.0573 0.69 B_Naive1 L2
ENSG00000111145 ELK3 914526 sc-eQTL 1.16e-01 -0.113 0.0718 0.69 B_Naive1 L2
ENSG00000139350 NEDD1 201678 sc-eQTL 6.86e-01 0.0364 0.09 0.69 B_Naive1 L2
ENSG00000059758 CDK17 708421 sc-eQTL 3.95e-02 -0.149 0.0719 0.689 B_Naive2 L2
ENSG00000111145 ELK3 914526 sc-eQTL 3.51e-01 -0.0757 0.081 0.689 B_Naive2 L2
ENSG00000139350 NEDD1 201678 sc-eQTL 8.72e-01 -0.0154 0.0958 0.689 B_Naive2 L2
ENSG00000059758 CDK17 708421 sc-eQTL 2.05e-02 -0.155 0.0664 0.689 CD4_CTL L2
ENSG00000111145 ELK3 914526 sc-eQTL 6.82e-01 0.0394 0.0961 0.689 CD4_CTL L2
ENSG00000139350 NEDD1 201678 sc-eQTL 5.87e-01 0.0526 0.0965 0.689 CD4_CTL L2
ENSG00000059758 CDK17 708421 sc-eQTL 3.78e-01 -0.0368 0.0417 0.69 CD4_Naive L2
ENSG00000111145 ELK3 914526 sc-eQTL 3.47e-01 0.0569 0.0603 0.69 CD4_Naive L2
ENSG00000139350 NEDD1 201678 sc-eQTL 8.54e-01 0.0122 0.0662 0.69 CD4_Naive L2
ENSG00000059758 CDK17 708421 sc-eQTL 6.46e-01 -0.0188 0.0408 0.69 CD4_TCM L2
ENSG00000111145 ELK3 914526 sc-eQTL 7.49e-01 0.0219 0.0682 0.69 CD4_TCM L2
ENSG00000139350 NEDD1 201678 sc-eQTL 9.91e-01 -0.000826 0.0764 0.69 CD4_TCM L2
ENSG00000059758 CDK17 708421 sc-eQTL 3.13e-01 -0.0508 0.0502 0.69 CD4_TEM L2
ENSG00000111145 ELK3 914526 sc-eQTL 8.96e-01 0.00948 0.0722 0.69 CD4_TEM L2
ENSG00000139350 NEDD1 201678 sc-eQTL 4.31e-01 0.0706 0.0896 0.69 CD4_TEM L2
ENSG00000059758 CDK17 708421 sc-eQTL 3.21e-01 -0.0484 0.0487 0.69 CD8_CTL L2
ENSG00000111145 ELK3 914526 sc-eQTL 8.35e-02 0.138 0.0796 0.69 CD8_CTL L2
ENSG00000139350 NEDD1 201678 sc-eQTL 4.01e-01 0.0695 0.0826 0.69 CD8_CTL L2
ENSG00000059758 CDK17 708421 sc-eQTL 8.35e-02 -0.102 0.0587 0.69 CD8_Naive L2
ENSG00000111145 ELK3 914526 sc-eQTL 4.07e-01 0.0621 0.0748 0.69 CD8_Naive L2
ENSG00000139350 NEDD1 201678 sc-eQTL 8.89e-01 -0.0112 0.0802 0.69 CD8_Naive L2
ENSG00000059758 CDK17 708421 sc-eQTL 8.93e-01 0.00845 0.0627 0.69 CD8_TCM L2
ENSG00000111145 ELK3 914526 sc-eQTL 6.67e-01 0.0336 0.078 0.69 CD8_TCM L2
ENSG00000139350 NEDD1 201678 sc-eQTL 7.38e-01 -0.0295 0.088 0.69 CD8_TCM L2
ENSG00000059758 CDK17 708421 sc-eQTL 5.70e-01 -0.0457 0.0804 0.692 CD8_TEM L2
ENSG00000111145 ELK3 914526 sc-eQTL 1.73e-01 -0.132 0.0964 0.692 CD8_TEM L2
ENSG00000139350 NEDD1 201678 sc-eQTL 1.92e-01 -0.127 0.0973 0.692 CD8_TEM L2
ENSG00000059758 CDK17 708421 sc-eQTL 5.18e-01 0.0337 0.052 0.693 MAIT L2
ENSG00000111145 ELK3 914526 sc-eQTL 4.56e-01 -0.0503 0.0674 0.693 MAIT L2
ENSG00000139350 NEDD1 201678 sc-eQTL 9.52e-01 0.00535 0.0878 0.693 MAIT L2
ENSG00000188596 CFAP54 619330 sc-eQTL 1.90e-01 -0.114 0.0867 0.693 MAIT L2
ENSG00000059758 CDK17 708421 sc-eQTL 3.85e-01 0.0471 0.0541 0.687 NK_CD56bright L2
ENSG00000111145 ELK3 914526 sc-eQTL 8.27e-01 0.0186 0.085 0.687 NK_CD56bright L2
ENSG00000139350 NEDD1 201678 sc-eQTL 7.30e-03 -0.239 0.0881 0.687 NK_CD56bright L2
ENSG00000059758 CDK17 708421 sc-eQTL 7.60e-01 -0.0143 0.047 0.69 NK_CD56dim L2
ENSG00000111145 ELK3 914526 sc-eQTL 6.32e-01 0.036 0.0751 0.69 NK_CD56dim L2
ENSG00000139350 NEDD1 201678 sc-eQTL 9.92e-01 -0.000854 0.0823 0.69 NK_CD56dim L2
ENSG00000059758 CDK17 708421 sc-eQTL 9.03e-01 -0.00899 0.0738 0.689 NK_HLA L2
ENSG00000111145 ELK3 914526 sc-eQTL 6.36e-01 0.0425 0.0897 0.689 NK_HLA L2
ENSG00000139350 NEDD1 201678 sc-eQTL 9.82e-01 0.00198 0.0885 0.689 NK_HLA L2
ENSG00000059758 CDK17 708421 sc-eQTL 3.65e-01 -0.0463 0.051 0.69 NK_cytokine L2
ENSG00000111145 ELK3 914526 sc-eQTL 6.65e-01 -0.0358 0.0827 0.69 NK_cytokine L2
ENSG00000139350 NEDD1 201678 sc-eQTL 8.40e-01 0.0175 0.0866 0.69 NK_cytokine L2
ENSG00000059758 CDK17 708421 sc-eQTL 3.31e-01 -0.0954 0.0977 0.715 PB L2
ENSG00000111145 ELK3 914526 sc-eQTL 1.52e-01 0.158 0.11 0.715 PB L2
ENSG00000139350 NEDD1 201678 sc-eQTL 9.29e-01 0.0114 0.129 0.715 PB L2
ENSG00000059758 CDK17 708421 sc-eQTL 5.06e-02 -0.114 0.058 0.693 Pro_T L2
ENSG00000111145 ELK3 914526 sc-eQTL 7.61e-02 0.165 0.0928 0.693 Pro_T L2
ENSG00000139350 NEDD1 201678 sc-eQTL 5.71e-01 -0.0486 0.0856 0.693 Pro_T L2
ENSG00000188596 CFAP54 619330 sc-eQTL 1.52e-01 -0.0991 0.069 0.693 Pro_T L2
ENSG00000059758 CDK17 708421 sc-eQTL 3.09e-01 -0.0637 0.0625 0.69 Treg L2
ENSG00000111145 ELK3 914526 sc-eQTL 6.04e-01 -0.0374 0.0719 0.69 Treg L2
ENSG00000139350 NEDD1 201678 sc-eQTL 4.03e-01 0.0777 0.0928 0.69 Treg L2
ENSG00000059758 CDK17 708421 sc-eQTL 1.85e-01 0.104 0.0779 0.68 cDC L2
ENSG00000111145 ELK3 914526 sc-eQTL 1.88e-01 0.121 0.0916 0.68 cDC L2
ENSG00000139350 NEDD1 201678 sc-eQTL 4.45e-01 -0.0717 0.0937 0.68 cDC L2
ENSG00000059758 CDK17 708421 sc-eQTL 7.64e-01 0.0206 0.0688 0.69 cMono_IL1B L2
ENSG00000111145 ELK3 914526 sc-eQTL 5.50e-01 0.0374 0.0624 0.69 cMono_IL1B L2
ENSG00000139350 NEDD1 201678 sc-eQTL 9.30e-03 -0.229 0.0873 0.69 cMono_IL1B L2
ENSG00000059758 CDK17 708421 sc-eQTL 5.82e-01 -0.0428 0.0776 0.69 cMono_S100A L2
ENSG00000111145 ELK3 914526 sc-eQTL 8.09e-01 0.0172 0.0709 0.69 cMono_S100A L2
ENSG00000139350 NEDD1 201678 sc-eQTL 1.04e-02 -0.241 0.0931 0.69 cMono_S100A L2
ENSG00000059758 CDK17 708421 sc-eQTL 9.22e-01 -0.00726 0.0738 0.67 gdT L2
ENSG00000111145 ELK3 914526 sc-eQTL 2.48e-01 0.118 0.102 0.67 gdT L2
ENSG00000139350 NEDD1 201678 sc-eQTL 2.87e-01 0.116 0.108 0.67 gdT L2
ENSG00000188596 CFAP54 619330 sc-eQTL 8.66e-01 0.0161 0.0954 0.67 gdT L2
ENSG00000059758 CDK17 708421 sc-eQTL 9.34e-01 0.00713 0.0864 0.687 intMono L2
ENSG00000111145 ELK3 914526 sc-eQTL 4.98e-01 -0.0541 0.0797 0.687 intMono L2
ENSG00000139350 NEDD1 201678 sc-eQTL 8.04e-01 0.0221 0.0886 0.687 intMono L2
ENSG00000059758 CDK17 708421 sc-eQTL 9.56e-01 -0.00386 0.0696 0.681 ncMono L2
ENSG00000111145 ELK3 914526 sc-eQTL 6.30e-01 0.0358 0.0743 0.681 ncMono L2
ENSG00000139350 NEDD1 201678 sc-eQTL 4.99e-02 -0.158 0.0798 0.681 ncMono L2
ENSG00000059758 CDK17 708421 sc-eQTL 4.47e-01 0.0671 0.088 0.669 pDC L2
ENSG00000111145 ELK3 914526 sc-eQTL 1.26e-01 -0.156 0.101 0.669 pDC L2
ENSG00000139350 NEDD1 201678 sc-eQTL 7.41e-01 0.0325 0.0981 0.669 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 708421 sc-eQTL 1.48e-01 -0.0889 0.0612 0.69 B_Memory LOneK1K
ENSG00000111145 ELK3 914526 sc-eQTL 1.73e-01 -0.0992 0.0726 0.69 B_Memory LOneK1K
ENSG00000139350 NEDD1 201678 sc-eQTL 7.13e-01 -0.0341 0.0927 0.69 B_Memory LOneK1K
ENSG00000059758 CDK17 708421 sc-eQTL 3.19e-03 -0.152 0.051 0.69 B_Naive LOneK1K
ENSG00000111145 ELK3 914526 sc-eQTL 1.12e-01 -0.106 0.0661 0.69 B_Naive LOneK1K
ENSG00000139350 NEDD1 201678 sc-eQTL 4.50e-01 0.067 0.0885 0.69 B_Naive LOneK1K
ENSG00000059758 CDK17 708421 sc-eQTL 9.36e-01 0.00495 0.0621 0.69 CD14_Mono LOneK1K
ENSG00000111145 ELK3 914526 sc-eQTL 4.87e-01 0.0414 0.0596 0.69 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 201678 sc-eQTL 1.06e-03 -0.292 0.088 0.69 CD14_Mono LOneK1K
ENSG00000059758 CDK17 708421 sc-eQTL 8.80e-01 -0.00957 0.0633 0.688 CD16_Mono LOneK1K
ENSG00000111145 ELK3 914526 sc-eQTL 9.14e-01 0.00662 0.0613 0.688 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 201678 sc-eQTL 1.77e-01 -0.11 0.0808 0.688 CD16_Mono LOneK1K
ENSG00000059758 CDK17 708421 sc-eQTL 5.78e-01 -0.0245 0.044 0.69 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 914526 sc-eQTL 6.91e-01 0.0279 0.0701 0.69 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 201678 sc-eQTL 8.52e-01 0.014 0.0748 0.69 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000139350 NEDD1 201678 eQTL 0.0157 -0.0604 0.025 0.0 0.0 0.292

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina