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Genes within 1Mb (chr12:96678177:CT:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 277697 sc-eQTL 7.17e-01 -0.0681 0.187 0.051 B_Activated L2
ENSG00000111144 LTA4H 634657 sc-eQTL 1.66e-01 0.294 0.211 0.051 B_Activated L2
ENSG00000111145 ELK3 483802 sc-eQTL 7.23e-01 0.0799 0.225 0.051 B_Activated L2
ENSG00000139343 SNRPF 819249 sc-eQTL 5.72e-01 0.12 0.212 0.051 B_Activated L2
ENSG00000139350 NEDD1 -229046 sc-eQTL 7.58e-01 0.0685 0.222 0.051 B_Activated L2
ENSG00000059758 CDK17 277697 sc-eQTL 1.08e-01 -0.323 0.2 0.059 PB L2
ENSG00000111144 LTA4H 634657 sc-eQTL 1.91e-02 0.413 0.174 0.059 PB L2
ENSG00000111145 ELK3 483802 sc-eQTL 7.51e-01 -0.0725 0.228 0.059 PB L2
ENSG00000139343 SNRPF 819249 sc-eQTL 3.56e-01 0.206 0.222 0.059 PB L2
ENSG00000139350 NEDD1 -229046 sc-eQTL 7.98e-01 0.0679 0.265 0.059 PB L2
ENSG00000059758 CDK17 277697 sc-eQTL 7.14e-02 -0.233 0.129 0.05 Pro_T L2
ENSG00000074527 NTN4 887025 sc-eQTL 8.87e-01 -0.0207 0.146 0.05 Pro_T L2
ENSG00000111144 LTA4H 634657 sc-eQTL 1.81e-02 0.403 0.169 0.05 Pro_T L2
ENSG00000111145 ELK3 483802 sc-eQTL 7.02e-01 0.0794 0.207 0.05 Pro_T L2
ENSG00000139343 SNRPF 819249 sc-eQTL 6.77e-02 0.238 0.13 0.05 Pro_T L2
ENSG00000139350 NEDD1 -229046 sc-eQTL 9.37e-01 -0.0149 0.19 0.05 Pro_T L2
ENSG00000188596 CFAP54 188606 sc-eQTL 5.72e-01 -0.0868 0.153 0.05 Pro_T L2
ENSG00000059758 CDK17 277697 sc-eQTL 2.06e-01 0.245 0.193 0.051 intMono L2
ENSG00000084110 HAL 681812 sc-eQTL 7.01e-01 0.0753 0.196 0.051 intMono L2
ENSG00000111144 LTA4H 634657 sc-eQTL 8.49e-01 0.0383 0.201 0.051 intMono L2
ENSG00000111145 ELK3 483802 sc-eQTL 5.17e-01 -0.116 0.179 0.051 intMono L2
ENSG00000139343 SNRPF 819249 sc-eQTL 9.42e-02 0.32 0.19 0.051 intMono L2
ENSG00000139350 NEDD1 -229046 sc-eQTL 5.09e-01 -0.132 0.199 0.051 intMono L2
ENSG00000257715 AC007298.1 652854 sc-eQTL 8.29e-01 0.0434 0.2 0.051 intMono L2
ENSG00000059758 CDK17 277697 sc-eQTL 9.81e-01 0.00373 0.16 0.052 ncMono L2
ENSG00000084110 HAL 681812 sc-eQTL 7.02e-01 -0.0685 0.178 0.052 ncMono L2
ENSG00000111144 LTA4H 634657 sc-eQTL 5.85e-01 0.109 0.199 0.052 ncMono L2
ENSG00000111145 ELK3 483802 sc-eQTL 4.78e-01 -0.121 0.171 0.052 ncMono L2
ENSG00000139343 SNRPF 819249 sc-eQTL 7.61e-03 0.462 0.171 0.052 ncMono L2
ENSG00000139350 NEDD1 -229046 sc-eQTL 7.56e-01 0.0577 0.185 0.052 ncMono L2
ENSG00000257715 AC007298.1 652854 sc-eQTL 3.66e-01 0.191 0.211 0.052 ncMono L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000139343 SNRPF 819249 eQTL 0.0197 0.0459 0.0196 0.00143 0.0 0.0486
ENSG00000139350 NEDD1 -229046 eQTL 0.000158 -0.198 0.0523 0.0 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000139350 NEDD1 -229046 2.69e-06 2.42e-06 8.52e-07 3.36e-06 8.58e-07 9.66e-07 2.25e-06 4.25e-07 1.79e-06 8.27e-07 3.2e-06 1.29e-06 3.47e-06 1.38e-06 9.53e-07 1.05e-06 2e-06 2.24e-06 1.33e-06 7.99e-07 1.19e-06 1.96e-06 2.47e-06 6.61e-07 4.05e-06 1.33e-06 1.42e-06 1.78e-06 2.82e-06 3e-06 1.97e-06 4.53e-07 2.84e-07 1.36e-06 2.13e-06 9.59e-07 7.82e-07 3.79e-07 5.09e-07 3.62e-07 2.87e-07 3.49e-06 6.52e-07 2.52e-07 6.74e-07 3.52e-07 3.69e-07 2.64e-07 1.68e-07