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Genes within 1Mb (chr12:96469591:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 69111 sc-eQTL 7.53e-01 -0.0159 0.0504 0.656 B L1
ENSG00000111142 METAP2 996071 sc-eQTL 6.81e-01 -0.0294 0.0712 0.656 B L1
ENSG00000111144 LTA4H 426071 sc-eQTL 3.25e-01 0.0616 0.0624 0.656 B L1
ENSG00000111145 ELK3 275216 sc-eQTL 9.39e-01 -0.00513 0.0666 0.656 B L1
ENSG00000136014 USP44 918115 sc-eQTL 2.25e-02 -0.186 0.0811 0.656 B L1
ENSG00000139343 SNRPF 610663 sc-eQTL 6.38e-01 -0.0285 0.0605 0.656 B L1
ENSG00000139350 NEDD1 -437632 sc-eQTL 8.43e-01 -0.0175 0.0883 0.656 B L1
ENSG00000059758 CDK17 69111 sc-eQTL 2.61e-01 -0.0459 0.0407 0.656 CD4T L1
ENSG00000111142 METAP2 996071 sc-eQTL 5.17e-01 -0.0369 0.057 0.656 CD4T L1
ENSG00000111144 LTA4H 426071 sc-eQTL 5.90e-01 0.0303 0.0561 0.656 CD4T L1
ENSG00000111145 ELK3 275216 sc-eQTL 7.68e-01 0.018 0.0608 0.656 CD4T L1
ENSG00000136014 USP44 918115 sc-eQTL 1.64e-01 0.12 0.0863 0.656 CD4T L1
ENSG00000139343 SNRPF 610663 sc-eQTL 6.37e-01 -0.0251 0.0531 0.656 CD4T L1
ENSG00000139350 NEDD1 -437632 sc-eQTL 7.00e-01 0.0253 0.0654 0.656 CD4T L1
ENSG00000059758 CDK17 69111 sc-eQTL 3.90e-02 -0.0858 0.0413 0.656 CD8T L1
ENSG00000111142 METAP2 996071 sc-eQTL 3.37e-01 0.0647 0.0672 0.656 CD8T L1
ENSG00000111144 LTA4H 426071 sc-eQTL 8.60e-01 0.00791 0.0448 0.656 CD8T L1
ENSG00000111145 ELK3 275216 sc-eQTL 2.34e-01 -0.0802 0.0672 0.656 CD8T L1
ENSG00000136014 USP44 918115 sc-eQTL 2.12e-01 0.0956 0.0764 0.656 CD8T L1
ENSG00000139343 SNRPF 610663 sc-eQTL 6.60e-01 0.0243 0.0552 0.656 CD8T L1
ENSG00000139350 NEDD1 -437632 sc-eQTL 8.63e-01 -0.0127 0.0735 0.656 CD8T L1
ENSG00000059758 CDK17 69111 sc-eQTL 1.34e-01 -0.12 0.0795 0.653 DC L1
ENSG00000084110 HAL 473226 sc-eQTL 6.19e-01 0.0452 0.0909 0.653 DC L1
ENSG00000111142 METAP2 996071 sc-eQTL 8.48e-01 -0.0192 0.1 0.653 DC L1
ENSG00000111144 LTA4H 426071 sc-eQTL 3.10e-01 0.0755 0.0742 0.653 DC L1
ENSG00000111145 ELK3 275216 sc-eQTL 9.86e-01 0.00157 0.0911 0.653 DC L1
ENSG00000139343 SNRPF 610663 sc-eQTL 8.14e-01 0.0179 0.0758 0.653 DC L1
ENSG00000139350 NEDD1 -437632 sc-eQTL 1.89e-01 -0.128 0.0969 0.653 DC L1
ENSG00000257715 AC007298.1 444268 sc-eQTL 1.88e-01 -0.116 0.0875 0.653 DC L1
ENSG00000059758 CDK17 69111 sc-eQTL 3.57e-01 -0.0585 0.0634 0.656 Mono L1
ENSG00000084110 HAL 473226 sc-eQTL 9.69e-01 0.00311 0.08 0.656 Mono L1
ENSG00000111142 METAP2 996071 sc-eQTL 5.16e-01 -0.0449 0.0691 0.656 Mono L1
ENSG00000111144 LTA4H 426071 sc-eQTL 3.94e-02 0.185 0.0895 0.656 Mono L1
ENSG00000111145 ELK3 275216 sc-eQTL 7.91e-01 -0.0161 0.0607 0.656 Mono L1
ENSG00000139343 SNRPF 610663 sc-eQTL 5.06e-01 -0.0381 0.0572 0.656 Mono L1
ENSG00000139350 NEDD1 -437632 sc-eQTL 1.65e-02 -0.209 0.0867 0.656 Mono L1
ENSG00000257715 AC007298.1 444268 sc-eQTL 1.62e-01 0.119 0.0848 0.656 Mono L1
ENSG00000059758 CDK17 69111 sc-eQTL 6.79e-01 -0.0196 0.0473 0.655 NK L1
ENSG00000111142 METAP2 996071 sc-eQTL 9.09e-01 0.00798 0.07 0.655 NK L1
ENSG00000111144 LTA4H 426071 sc-eQTL 4.58e-01 0.0597 0.0802 0.655 NK L1
ENSG00000111145 ELK3 275216 sc-eQTL 8.43e-01 0.0151 0.0762 0.655 NK L1
ENSG00000139343 SNRPF 610663 sc-eQTL 2.25e-01 0.0766 0.0629 0.655 NK L1
ENSG00000139350 NEDD1 -437632 sc-eQTL 5.66e-01 -0.0459 0.0799 0.655 NK L1
ENSG00000059758 CDK17 69111 sc-eQTL 4.24e-01 0.0315 0.0393 0.656 Other_T L1
ENSG00000074527 NTN4 678439 sc-eQTL 1.94e-01 -0.0945 0.0725 0.656 Other_T L1
ENSG00000111142 METAP2 996071 sc-eQTL 7.66e-01 0.0224 0.0751 0.656 Other_T L1
ENSG00000111144 LTA4H 426071 sc-eQTL 8.95e-01 0.0108 0.0823 0.656 Other_T L1
ENSG00000111145 ELK3 275216 sc-eQTL 8.24e-01 -0.0143 0.0642 0.656 Other_T L1
ENSG00000139343 SNRPF 610663 sc-eQTL 8.50e-01 -0.0113 0.0597 0.656 Other_T L1
ENSG00000139350 NEDD1 -437632 sc-eQTL 4.14e-02 -0.185 0.0899 0.656 Other_T L1
ENSG00000188596 CFAP54 -19980 sc-eQTL 1.28e-01 0.143 0.0936 0.656 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 69111 sc-eQTL 6.83e-01 0.0374 0.0914 0.64 B_Activated L2
ENSG00000111142 METAP2 996071 sc-eQTL 5.30e-01 0.0723 0.115 0.64 B_Activated L2
ENSG00000111144 LTA4H 426071 sc-eQTL 7.46e-02 0.184 0.103 0.64 B_Activated L2
ENSG00000111145 ELK3 275216 sc-eQTL 6.29e-01 0.053 0.11 0.64 B_Activated L2
ENSG00000136014 USP44 918115 sc-eQTL 5.18e-01 0.0545 0.0841 0.64 B_Activated L2
ENSG00000139343 SNRPF 610663 sc-eQTL 2.40e-01 0.121 0.103 0.64 B_Activated L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 7.28e-01 -0.0377 0.108 0.64 B_Activated L2
ENSG00000059758 CDK17 69111 sc-eQTL 8.04e-01 0.0196 0.0786 0.655 B_Intermediate L2
ENSG00000111142 METAP2 996071 sc-eQTL 7.91e-01 -0.0239 0.0902 0.655 B_Intermediate L2
ENSG00000111144 LTA4H 426071 sc-eQTL 7.46e-01 0.0247 0.0761 0.655 B_Intermediate L2
ENSG00000111145 ELK3 275216 sc-eQTL 1.20e-01 -0.133 0.0854 0.655 B_Intermediate L2
ENSG00000136014 USP44 918115 sc-eQTL 1.06e-03 -0.328 0.0987 0.655 B_Intermediate L2
ENSG00000139343 SNRPF 610663 sc-eQTL 7.44e-01 0.0279 0.0855 0.655 B_Intermediate L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 5.62e-01 0.0581 0.1 0.655 B_Intermediate L2
ENSG00000059758 CDK17 69111 sc-eQTL 4.71e-01 -0.0547 0.0756 0.659 B_Memory L2
ENSG00000111142 METAP2 996071 sc-eQTL 8.81e-01 0.0147 0.0985 0.659 B_Memory L2
ENSG00000111144 LTA4H 426071 sc-eQTL 4.13e-01 -0.0715 0.0873 0.659 B_Memory L2
ENSG00000111145 ELK3 275216 sc-eQTL 4.27e-02 0.173 0.0851 0.659 B_Memory L2
ENSG00000136014 USP44 918115 sc-eQTL 7.37e-02 -0.168 0.0936 0.659 B_Memory L2
ENSG00000139343 SNRPF 610663 sc-eQTL 1.65e-01 -0.126 0.0907 0.659 B_Memory L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 8.95e-02 0.171 0.1 0.659 B_Memory L2
ENSG00000059758 CDK17 69111 sc-eQTL 3.09e-01 -0.0635 0.0622 0.656 B_Naive1 L2
ENSG00000111142 METAP2 996071 sc-eQTL 9.32e-01 -0.00686 0.0807 0.656 B_Naive1 L2
ENSG00000111144 LTA4H 426071 sc-eQTL 9.47e-01 -0.00437 0.0653 0.656 B_Naive1 L2
ENSG00000111145 ELK3 275216 sc-eQTL 5.98e-01 -0.0407 0.0772 0.656 B_Naive1 L2
ENSG00000136014 USP44 918115 sc-eQTL 8.83e-01 -0.0143 0.0971 0.656 B_Naive1 L2
ENSG00000139343 SNRPF 610663 sc-eQTL 9.91e-01 -0.000823 0.0751 0.656 B_Naive1 L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 2.21e-01 0.118 0.096 0.656 B_Naive1 L2
ENSG00000059758 CDK17 69111 sc-eQTL 1.60e-01 0.111 0.0787 0.657 B_Naive2 L2
ENSG00000111142 METAP2 996071 sc-eQTL 3.49e-01 -0.0893 0.0952 0.657 B_Naive2 L2
ENSG00000111144 LTA4H 426071 sc-eQTL 2.72e-01 0.0823 0.0747 0.657 B_Naive2 L2
ENSG00000111145 ELK3 275216 sc-eQTL 3.61e-01 0.0807 0.0881 0.657 B_Naive2 L2
ENSG00000136014 USP44 918115 sc-eQTL 6.34e-01 -0.0455 0.0953 0.657 B_Naive2 L2
ENSG00000139343 SNRPF 610663 sc-eQTL 9.84e-01 -0.00181 0.0877 0.657 B_Naive2 L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 1.59e-01 -0.147 0.104 0.657 B_Naive2 L2
ENSG00000059758 CDK17 69111 sc-eQTL 9.16e-01 0.00763 0.0727 0.655 CD4_CTL L2
ENSG00000111142 METAP2 996071 sc-eQTL 1.02e-01 -0.17 0.103 0.655 CD4_CTL L2
ENSG00000111144 LTA4H 426071 sc-eQTL 7.72e-01 0.0297 0.102 0.655 CD4_CTL L2
ENSG00000111145 ELK3 275216 sc-eQTL 6.61e-01 -0.0455 0.104 0.655 CD4_CTL L2
ENSG00000136014 USP44 918115 sc-eQTL 4.41e-01 0.0639 0.0827 0.655 CD4_CTL L2
ENSG00000139343 SNRPF 610663 sc-eQTL 3.58e-01 0.083 0.09 0.655 CD4_CTL L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 2.61e-02 -0.231 0.103 0.655 CD4_CTL L2
ENSG00000059758 CDK17 69111 sc-eQTL 2.36e-01 -0.0529 0.0445 0.656 CD4_Naive L2
ENSG00000111142 METAP2 996071 sc-eQTL 6.26e-01 -0.0315 0.0644 0.656 CD4_Naive L2
ENSG00000111144 LTA4H 426071 sc-eQTL 3.83e-01 0.0563 0.0645 0.656 CD4_Naive L2
ENSG00000111145 ELK3 275216 sc-eQTL 5.57e-01 -0.038 0.0646 0.656 CD4_Naive L2
ENSG00000136014 USP44 918115 sc-eQTL 2.26e-01 0.11 0.0902 0.656 CD4_Naive L2
ENSG00000139343 SNRPF 610663 sc-eQTL 2.05e-01 -0.0727 0.0572 0.656 CD4_Naive L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 7.59e-01 -0.0217 0.0707 0.656 CD4_Naive L2
ENSG00000059758 CDK17 69111 sc-eQTL 4.32e-01 -0.0346 0.0439 0.656 CD4_TCM L2
ENSG00000111142 METAP2 996071 sc-eQTL 9.72e-01 -0.00262 0.0748 0.656 CD4_TCM L2
ENSG00000111144 LTA4H 426071 sc-eQTL 7.29e-01 0.0259 0.0745 0.656 CD4_TCM L2
ENSG00000111145 ELK3 275216 sc-eQTL 2.30e-01 0.088 0.0731 0.656 CD4_TCM L2
ENSG00000136014 USP44 918115 sc-eQTL 4.23e-01 0.0813 0.101 0.656 CD4_TCM L2
ENSG00000139343 SNRPF 610663 sc-eQTL 2.84e-01 0.0645 0.06 0.656 CD4_TCM L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 1.51e-01 0.118 0.0818 0.656 CD4_TCM L2
ENSG00000059758 CDK17 69111 sc-eQTL 1.71e-01 0.0738 0.0537 0.656 CD4_TEM L2
ENSG00000111142 METAP2 996071 sc-eQTL 7.07e-01 -0.0339 0.0901 0.656 CD4_TEM L2
ENSG00000111144 LTA4H 426071 sc-eQTL 7.06e-01 -0.0315 0.0833 0.656 CD4_TEM L2
ENSG00000111145 ELK3 275216 sc-eQTL 4.20e-01 0.0624 0.0773 0.656 CD4_TEM L2
ENSG00000136014 USP44 918115 sc-eQTL 9.37e-01 -0.00756 0.0952 0.656 CD4_TEM L2
ENSG00000139343 SNRPF 610663 sc-eQTL 3.47e-01 -0.0762 0.0809 0.656 CD4_TEM L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 1.94e-01 -0.125 0.0957 0.656 CD4_TEM L2
ENSG00000059758 CDK17 69111 sc-eQTL 7.85e-01 -0.0143 0.0523 0.656 CD8_CTL L2
ENSG00000111142 METAP2 996071 sc-eQTL 1.42e-01 0.132 0.0899 0.656 CD8_CTL L2
ENSG00000111144 LTA4H 426071 sc-eQTL 6.52e-01 0.0427 0.0943 0.656 CD8_CTL L2
ENSG00000111145 ELK3 275216 sc-eQTL 2.88e-01 0.0914 0.0857 0.656 CD8_CTL L2
ENSG00000136014 USP44 918115 sc-eQTL 3.52e-01 0.0891 0.0956 0.656 CD8_CTL L2
ENSG00000139343 SNRPF 610663 sc-eQTL 7.41e-01 0.0261 0.079 0.656 CD8_CTL L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 8.49e-01 0.0169 0.0886 0.656 CD8_CTL L2
ENSG00000059758 CDK17 69111 sc-eQTL 2.14e-02 -0.144 0.062 0.656 CD8_Naive L2
ENSG00000111142 METAP2 996071 sc-eQTL 7.42e-01 0.0275 0.0834 0.656 CD8_Naive L2
ENSG00000111144 LTA4H 426071 sc-eQTL 5.27e-01 0.0476 0.0752 0.656 CD8_Naive L2
ENSG00000111145 ELK3 275216 sc-eQTL 7.06e-01 -0.0301 0.0796 0.656 CD8_Naive L2
ENSG00000136014 USP44 918115 sc-eQTL 1.52e-01 0.12 0.0832 0.656 CD8_Naive L2
ENSG00000139343 SNRPF 610663 sc-eQTL 7.09e-01 -0.0268 0.0715 0.656 CD8_Naive L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 7.18e-01 0.0308 0.0852 0.656 CD8_Naive L2
ENSG00000059758 CDK17 69111 sc-eQTL 3.48e-01 0.063 0.0669 0.653 CD8_TCM L2
ENSG00000111142 METAP2 996071 sc-eQTL 2.92e-01 -0.106 0.0998 0.653 CD8_TCM L2
ENSG00000111144 LTA4H 426071 sc-eQTL 5.20e-01 0.0636 0.0985 0.653 CD8_TCM L2
ENSG00000111145 ELK3 275216 sc-eQTL 7.43e-02 -0.149 0.0828 0.653 CD8_TCM L2
ENSG00000136014 USP44 918115 sc-eQTL 2.86e-01 -0.0965 0.0902 0.653 CD8_TCM L2
ENSG00000139343 SNRPF 610663 sc-eQTL 6.16e-01 0.0482 0.0961 0.653 CD8_TCM L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 7.04e-01 -0.0358 0.0941 0.653 CD8_TCM L2
ENSG00000059758 CDK17 69111 sc-eQTL 6.39e-01 -0.04 0.0852 0.651 CD8_TEM L2
ENSG00000111142 METAP2 996071 sc-eQTL 7.74e-01 0.0288 0.1 0.651 CD8_TEM L2
ENSG00000111144 LTA4H 426071 sc-eQTL 7.56e-01 0.0325 0.104 0.651 CD8_TEM L2
ENSG00000111145 ELK3 275216 sc-eQTL 6.36e-01 0.0486 0.103 0.651 CD8_TEM L2
ENSG00000136014 USP44 918115 sc-eQTL 6.79e-01 -0.0362 0.0873 0.651 CD8_TEM L2
ENSG00000139343 SNRPF 610663 sc-eQTL 3.22e-01 0.0946 0.0952 0.651 CD8_TEM L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 3.74e-01 -0.0921 0.103 0.651 CD8_TEM L2
ENSG00000059758 CDK17 69111 sc-eQTL 7.06e-01 -0.0214 0.0566 0.654 MAIT L2
ENSG00000074527 NTN4 678439 sc-eQTL 8.64e-02 -0.131 0.0758 0.654 MAIT L2
ENSG00000111142 METAP2 996071 sc-eQTL 1.55e-01 0.137 0.0957 0.654 MAIT L2
ENSG00000111144 LTA4H 426071 sc-eQTL 4.77e-01 0.0622 0.0874 0.654 MAIT L2
ENSG00000111145 ELK3 275216 sc-eQTL 4.25e-01 -0.0587 0.0733 0.654 MAIT L2
ENSG00000139343 SNRPF 610663 sc-eQTL 6.92e-01 -0.0337 0.0851 0.654 MAIT L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 2.04e-01 -0.121 0.0952 0.654 MAIT L2
ENSG00000188596 CFAP54 -19980 sc-eQTL 3.74e-01 0.0842 0.0945 0.654 MAIT L2
ENSG00000059758 CDK17 69111 sc-eQTL 1.11e-02 0.152 0.0592 0.656 NK_CD56bright L2
ENSG00000111142 METAP2 996071 sc-eQTL 3.47e-01 0.0956 0.101 0.656 NK_CD56bright L2
ENSG00000111144 LTA4H 426071 sc-eQTL 3.25e-01 0.0876 0.0888 0.656 NK_CD56bright L2
ENSG00000111145 ELK3 275216 sc-eQTL 8.26e-01 -0.0208 0.0945 0.656 NK_CD56bright L2
ENSG00000139343 SNRPF 610663 sc-eQTL 6.24e-01 0.0485 0.0988 0.656 NK_CD56bright L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 3.72e-01 -0.0891 0.0995 0.656 NK_CD56bright L2
ENSG00000059758 CDK17 69111 sc-eQTL 7.56e-01 -0.0158 0.051 0.655 NK_CD56dim L2
ENSG00000111142 METAP2 996071 sc-eQTL 3.31e-01 0.087 0.0892 0.655 NK_CD56dim L2
ENSG00000111144 LTA4H 426071 sc-eQTL 8.21e-01 -0.0209 0.0921 0.655 NK_CD56dim L2
ENSG00000111145 ELK3 275216 sc-eQTL 7.73e-01 -0.0236 0.0816 0.655 NK_CD56dim L2
ENSG00000139343 SNRPF 610663 sc-eQTL 7.78e-01 0.0219 0.0776 0.655 NK_CD56dim L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 1.71e-01 -0.122 0.089 0.655 NK_CD56dim L2
ENSG00000059758 CDK17 69111 sc-eQTL 2.77e-01 -0.0876 0.0804 0.658 NK_HLA L2
ENSG00000111142 METAP2 996071 sc-eQTL 5.41e-01 -0.0622 0.102 0.658 NK_HLA L2
ENSG00000111144 LTA4H 426071 sc-eQTL 7.65e-01 0.0317 0.106 0.658 NK_HLA L2
ENSG00000111145 ELK3 275216 sc-eQTL 4.88e-01 0.0681 0.098 0.658 NK_HLA L2
ENSG00000139343 SNRPF 610663 sc-eQTL 5.18e-01 0.0661 0.102 0.658 NK_HLA L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 5.70e-01 -0.0549 0.0967 0.658 NK_HLA L2
ENSG00000059758 CDK17 69111 sc-eQTL 2.15e-01 -0.0692 0.0557 0.655 NK_cytokine L2
ENSG00000111142 METAP2 996071 sc-eQTL 7.86e-01 0.0252 0.0928 0.655 NK_cytokine L2
ENSG00000111144 LTA4H 426071 sc-eQTL 2.54e-01 0.108 0.0942 0.655 NK_cytokine L2
ENSG00000111145 ELK3 275216 sc-eQTL 9.28e-01 -0.00816 0.0904 0.655 NK_cytokine L2
ENSG00000139343 SNRPF 610663 sc-eQTL 3.24e-01 0.0756 0.0764 0.655 NK_cytokine L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 1.29e-01 0.144 0.0942 0.655 NK_cytokine L2
ENSG00000059758 CDK17 69111 sc-eQTL 2.34e-01 -0.141 0.118 0.678 PB L2
ENSG00000111142 METAP2 996071 sc-eQTL 8.82e-01 -0.0207 0.139 0.678 PB L2
ENSG00000111144 LTA4H 426071 sc-eQTL 1.44e-01 0.153 0.104 0.678 PB L2
ENSG00000111145 ELK3 275216 sc-eQTL 1.75e-01 0.182 0.133 0.678 PB L2
ENSG00000136014 USP44 918115 sc-eQTL 4.64e-01 0.0913 0.124 0.678 PB L2
ENSG00000139343 SNRPF 610663 sc-eQTL 7.95e-01 -0.0342 0.131 0.678 PB L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 5.37e-01 -0.0965 0.156 0.678 PB L2
ENSG00000059758 CDK17 69111 sc-eQTL 8.70e-01 0.01 0.0615 0.654 Pro_T L2
ENSG00000074527 NTN4 678439 sc-eQTL 9.79e-01 -0.0018 0.0691 0.654 Pro_T L2
ENSG00000111142 METAP2 996071 sc-eQTL 7.72e-01 -0.0237 0.0815 0.654 Pro_T L2
ENSG00000111144 LTA4H 426071 sc-eQTL 1.78e-01 0.109 0.0809 0.654 Pro_T L2
ENSG00000111145 ELK3 275216 sc-eQTL 6.65e-01 0.0426 0.0982 0.654 Pro_T L2
ENSG00000139343 SNRPF 610663 sc-eQTL 4.55e-01 0.0463 0.0619 0.654 Pro_T L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 9.10e-01 -0.0102 0.09 0.654 Pro_T L2
ENSG00000188596 CFAP54 -19980 sc-eQTL 4.94e-01 0.0499 0.0727 0.654 Pro_T L2
ENSG00000059758 CDK17 69111 sc-eQTL 8.01e-01 0.017 0.0673 0.656 Treg L2
ENSG00000111142 METAP2 996071 sc-eQTL 4.09e-01 0.0757 0.0915 0.656 Treg L2
ENSG00000111144 LTA4H 426071 sc-eQTL 8.30e-01 -0.0183 0.0853 0.656 Treg L2
ENSG00000111145 ELK3 275216 sc-eQTL 2.66e-01 -0.0859 0.077 0.656 Treg L2
ENSG00000136014 USP44 918115 sc-eQTL 5.96e-01 0.0461 0.0867 0.656 Treg L2
ENSG00000139343 SNRPF 610663 sc-eQTL 2.70e-01 0.0988 0.0892 0.656 Treg L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 7.14e-01 0.0366 0.0998 0.656 Treg L2
ENSG00000059758 CDK17 69111 sc-eQTL 5.66e-01 -0.049 0.0852 0.654 cDC L2
ENSG00000084110 HAL 473226 sc-eQTL 4.42e-01 0.0682 0.0885 0.654 cDC L2
ENSG00000111142 METAP2 996071 sc-eQTL 7.40e-01 0.0356 0.107 0.654 cDC L2
ENSG00000111144 LTA4H 426071 sc-eQTL 3.07e-01 0.0777 0.0758 0.654 cDC L2
ENSG00000111145 ELK3 275216 sc-eQTL 6.48e-01 0.0459 0.1 0.654 cDC L2
ENSG00000139343 SNRPF 610663 sc-eQTL 8.32e-01 0.0178 0.084 0.654 cDC L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 9.03e-01 -0.0125 0.102 0.654 cDC L2
ENSG00000257715 AC007298.1 444268 sc-eQTL 4.19e-01 -0.0698 0.0861 0.654 cDC L2
ENSG00000059758 CDK17 69111 sc-eQTL 5.22e-02 -0.143 0.073 0.656 cMono_IL1B L2
ENSG00000084110 HAL 473226 sc-eQTL 9.01e-01 -0.00998 0.0804 0.656 cMono_IL1B L2
ENSG00000111142 METAP2 996071 sc-eQTL 8.73e-02 -0.142 0.0828 0.656 cMono_IL1B L2
ENSG00000111144 LTA4H 426071 sc-eQTL 1.61e-02 0.208 0.0856 0.656 cMono_IL1B L2
ENSG00000111145 ELK3 275216 sc-eQTL 4.07e-01 -0.0555 0.0668 0.656 cMono_IL1B L2
ENSG00000139343 SNRPF 610663 sc-eQTL 1.52e-01 -0.0987 0.0687 0.656 cMono_IL1B L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 1.40e-02 -0.232 0.0937 0.656 cMono_IL1B L2
ENSG00000257715 AC007298.1 444268 sc-eQTL 3.71e-01 0.0793 0.0885 0.656 cMono_IL1B L2
ENSG00000059758 CDK17 69111 sc-eQTL 4.36e-01 -0.0644 0.0825 0.656 cMono_S100A L2
ENSG00000084110 HAL 473226 sc-eQTL 1.77e-01 0.125 0.0923 0.656 cMono_S100A L2
ENSG00000111142 METAP2 996071 sc-eQTL 1.37e-01 0.139 0.0933 0.656 cMono_S100A L2
ENSG00000111144 LTA4H 426071 sc-eQTL 2.15e-01 0.115 0.0923 0.656 cMono_S100A L2
ENSG00000111145 ELK3 275216 sc-eQTL 8.53e-01 0.014 0.0754 0.656 cMono_S100A L2
ENSG00000139343 SNRPF 610663 sc-eQTL 7.11e-01 0.0277 0.0745 0.656 cMono_S100A L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 3.56e-02 -0.211 0.0996 0.656 cMono_S100A L2
ENSG00000257715 AC007298.1 444268 sc-eQTL 3.62e-01 0.0863 0.0945 0.656 cMono_S100A L2
ENSG00000059758 CDK17 69111 sc-eQTL 9.20e-02 0.14 0.0823 0.642 gdT L2
ENSG00000074527 NTN4 678439 sc-eQTL 9.67e-01 0.00392 0.0954 0.642 gdT L2
ENSG00000111142 METAP2 996071 sc-eQTL 4.91e-01 0.0822 0.119 0.642 gdT L2
ENSG00000111144 LTA4H 426071 sc-eQTL 8.16e-01 -0.0289 0.124 0.642 gdT L2
ENSG00000111145 ELK3 275216 sc-eQTL 3.95e-01 0.0979 0.115 0.642 gdT L2
ENSG00000139343 SNRPF 610663 sc-eQTL 8.04e-02 0.193 0.11 0.642 gdT L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 3.31e-01 0.119 0.122 0.642 gdT L2
ENSG00000188596 CFAP54 -19980 sc-eQTL 6.57e-01 0.0478 0.107 0.642 gdT L2
ENSG00000059758 CDK17 69111 sc-eQTL 1.20e-01 -0.146 0.0933 0.651 intMono L2
ENSG00000084110 HAL 473226 sc-eQTL 8.31e-01 -0.0203 0.0949 0.651 intMono L2
ENSG00000111142 METAP2 996071 sc-eQTL 4.78e-01 -0.0763 0.107 0.651 intMono L2
ENSG00000111144 LTA4H 426071 sc-eQTL 5.21e-02 0.188 0.0965 0.651 intMono L2
ENSG00000111145 ELK3 275216 sc-eQTL 8.52e-01 0.0162 0.0867 0.651 intMono L2
ENSG00000139343 SNRPF 610663 sc-eQTL 4.17e-01 -0.0753 0.0926 0.651 intMono L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 5.88e-01 -0.0522 0.0963 0.651 intMono L2
ENSG00000257715 AC007298.1 444268 sc-eQTL 1.19e-01 0.151 0.0963 0.651 intMono L2
ENSG00000059758 CDK17 69111 sc-eQTL 5.90e-01 -0.0402 0.0744 0.643 ncMono L2
ENSG00000084110 HAL 473226 sc-eQTL 2.28e-01 -0.1 0.0828 0.643 ncMono L2
ENSG00000111142 METAP2 996071 sc-eQTL 5.32e-01 0.0629 0.1 0.643 ncMono L2
ENSG00000111144 LTA4H 426071 sc-eQTL 1.76e-01 0.125 0.0922 0.643 ncMono L2
ENSG00000111145 ELK3 275216 sc-eQTL 7.05e-01 -0.0301 0.0795 0.643 ncMono L2
ENSG00000139343 SNRPF 610663 sc-eQTL 7.36e-01 0.0275 0.0812 0.643 ncMono L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 5.87e-01 0.0469 0.0862 0.643 ncMono L2
ENSG00000257715 AC007298.1 444268 sc-eQTL 4.40e-01 -0.0761 0.0983 0.643 ncMono L2
ENSG00000059758 CDK17 69111 sc-eQTL 3.56e-02 -0.205 0.0967 0.655 pDC L2
ENSG00000084110 HAL 473226 sc-eQTL 1.73e-01 0.113 0.0823 0.655 pDC L2
ENSG00000111142 METAP2 996071 sc-eQTL 8.50e-01 -0.0212 0.112 0.655 pDC L2
ENSG00000111144 LTA4H 426071 sc-eQTL 3.02e-02 0.2 0.0913 0.655 pDC L2
ENSG00000111145 ELK3 275216 sc-eQTL 6.70e-01 0.0484 0.113 0.655 pDC L2
ENSG00000139343 SNRPF 610663 sc-eQTL 3.30e-01 0.0965 0.0986 0.655 pDC L2
ENSG00000139350 NEDD1 -437632 sc-eQTL 6.19e-01 -0.0543 0.109 0.655 pDC L2
ENSG00000257715 AC007298.1 444268 sc-eQTL 6.55e-01 0.0419 0.0936 0.655 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 69111 sc-eQTL 8.45e-01 -0.013 0.0662 0.656 B_Memory LOneK1K
ENSG00000111142 METAP2 996071 sc-eQTL 7.81e-01 -0.0256 0.0921 0.656 B_Memory LOneK1K
ENSG00000111144 LTA4H 426071 sc-eQTL 5.65e-01 0.0396 0.0687 0.656 B_Memory LOneK1K
ENSG00000111145 ELK3 275216 sc-eQTL 4.29e-01 0.0622 0.0785 0.656 B_Memory LOneK1K
ENSG00000136014 USP44 918115 sc-eQTL 1.43e-03 -0.309 0.0956 0.656 B_Memory LOneK1K
ENSG00000139343 SNRPF 610663 sc-eQTL 3.83e-01 -0.0665 0.076 0.656 B_Memory LOneK1K
ENSG00000139350 NEDD1 -437632 sc-eQTL 3.99e-02 0.204 0.0989 0.656 B_Memory LOneK1K
ENSG00000059758 CDK17 69111 sc-eQTL 8.61e-01 -0.00985 0.0562 0.656 B_Naive LOneK1K
ENSG00000111142 METAP2 996071 sc-eQTL 3.28e-01 -0.0745 0.0759 0.656 B_Naive LOneK1K
ENSG00000111144 LTA4H 426071 sc-eQTL 4.89e-01 0.0437 0.063 0.656 B_Naive LOneK1K
ENSG00000111145 ELK3 275216 sc-eQTL 7.99e-01 -0.0183 0.0718 0.656 B_Naive LOneK1K
ENSG00000136014 USP44 918115 sc-eQTL 6.68e-01 -0.0377 0.0878 0.656 B_Naive LOneK1K
ENSG00000139343 SNRPF 610663 sc-eQTL 8.66e-01 -0.0122 0.0723 0.656 B_Naive LOneK1K
ENSG00000139350 NEDD1 -437632 sc-eQTL 8.64e-01 -0.0164 0.0957 0.656 B_Naive LOneK1K
ENSG00000059758 CDK17 69111 sc-eQTL 3.92e-02 -0.136 0.0658 0.656 CD14_Mono LOneK1K
ENSG00000084110 HAL 473226 sc-eQTL 8.05e-01 0.0199 0.0805 0.656 CD14_Mono LOneK1K
ENSG00000111142 METAP2 996071 sc-eQTL 7.27e-01 -0.0264 0.0758 0.656 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 426071 sc-eQTL 2.10e-02 0.203 0.0872 0.656 CD14_Mono LOneK1K
ENSG00000111145 ELK3 275216 sc-eQTL 7.60e-01 -0.0195 0.0638 0.656 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 610663 sc-eQTL 4.55e-01 -0.0461 0.0615 0.656 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -437632 sc-eQTL 5.81e-03 -0.264 0.0949 0.656 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 444268 sc-eQTL 1.24e-01 0.137 0.089 0.656 CD14_Mono LOneK1K
ENSG00000059758 CDK17 69111 sc-eQTL 2.17e-01 -0.0836 0.0676 0.655 CD16_Mono LOneK1K
ENSG00000084110 HAL 473226 sc-eQTL 3.43e-01 -0.076 0.08 0.655 CD16_Mono LOneK1K
ENSG00000111142 METAP2 996071 sc-eQTL 7.04e-01 -0.0346 0.0909 0.655 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 426071 sc-eQTL 9.53e-02 0.148 0.0883 0.655 CD16_Mono LOneK1K
ENSG00000111145 ELK3 275216 sc-eQTL 9.13e-01 -0.00716 0.0658 0.655 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 610663 sc-eQTL 9.79e-01 -0.00179 0.0678 0.655 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -437632 sc-eQTL 7.06e-01 -0.0328 0.087 0.655 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 444268 sc-eQTL 9.32e-01 0.00781 0.0921 0.655 CD16_Mono LOneK1K
ENSG00000059758 CDK17 69111 sc-eQTL 2.07e-01 -0.0603 0.0477 0.655 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 996071 sc-eQTL 5.62e-01 0.0422 0.0727 0.655 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 426071 sc-eQTL 8.33e-01 0.0176 0.0832 0.655 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 275216 sc-eQTL 9.37e-01 0.006 0.0761 0.655 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 610663 sc-eQTL 4.21e-01 0.0525 0.065 0.655 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -437632 sc-eQTL 6.80e-01 -0.0336 0.0812 0.655 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000139350 NEDD1 -437632 eQTL 7.91e-10 -0.154 0.0248 0.0 0.0 0.344
ENSG00000188596 CFAP54 -19984 eQTL 9.24e-07 -0.103 0.0209 0.002 0.00185 0.344

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000139350 NEDD1 -437632 5.59e-07 3.77e-07 8.83e-08 2.58e-07 1.05e-07 1.28e-07 4.14e-07 7.12e-08 2.35e-07 1.11e-07 3.25e-07 1.91e-07 5.09e-07 9.48e-08 8.45e-08 1.14e-07 1.62e-07 2.75e-07 8.93e-08 7.29e-08 1.33e-07 2.3e-07 2.48e-07 4.91e-08 4.88e-07 1.86e-07 1.37e-07 1.48e-07 2.19e-07 3.93e-07 1.71e-07 5.32e-08 5.09e-08 1.03e-07 1.01e-07 5.04e-08 6.57e-08 7.25e-08 4.99e-08 6.67e-08 5.09e-08 3.26e-07 3.13e-08 2.07e-08 3.4e-08 9.65e-09 9.07e-08 2.23e-09 4.98e-08
ENSG00000188596 CFAP54 -19984 1.41e-05 1.96e-05 2.53e-06 9.4e-06 2.38e-06 6.55e-06 2.04e-05 2.18e-06 1.48e-05 6.52e-06 1.91e-05 7.21e-06 2.89e-05 6.24e-06 4.19e-06 7.34e-06 8.25e-06 1.14e-05 3.84e-06 3.61e-06 6.46e-06 1.31e-05 1.4e-05 3.81e-06 2.54e-05 4.53e-06 6.81e-06 5.32e-06 1.61e-05 1.55e-05 1.03e-05 1.02e-06 1.28e-06 3.52e-06 6.02e-06 2.84e-06 1.77e-06 1.98e-06 2.22e-06 1.26e-06 9.79e-07 2.02e-05 1.68e-06 1.73e-07 7.75e-07 1.71e-06 1.82e-06 7.04e-07 4.72e-07