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Genes within 1Mb (chr12:96463300:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 62820 sc-eQTL 7.53e-01 -0.0159 0.0504 0.656 B L1
ENSG00000111142 METAP2 989780 sc-eQTL 6.81e-01 -0.0294 0.0712 0.656 B L1
ENSG00000111144 LTA4H 419780 sc-eQTL 3.25e-01 0.0616 0.0624 0.656 B L1
ENSG00000111145 ELK3 268925 sc-eQTL 9.39e-01 -0.00513 0.0666 0.656 B L1
ENSG00000136014 USP44 911824 sc-eQTL 2.25e-02 -0.186 0.0811 0.656 B L1
ENSG00000139343 SNRPF 604372 sc-eQTL 6.38e-01 -0.0285 0.0605 0.656 B L1
ENSG00000139350 NEDD1 -443923 sc-eQTL 8.43e-01 -0.0175 0.0883 0.656 B L1
ENSG00000059758 CDK17 62820 sc-eQTL 2.61e-01 -0.0459 0.0407 0.656 CD4T L1
ENSG00000111142 METAP2 989780 sc-eQTL 5.17e-01 -0.0369 0.057 0.656 CD4T L1
ENSG00000111144 LTA4H 419780 sc-eQTL 5.90e-01 0.0303 0.0561 0.656 CD4T L1
ENSG00000111145 ELK3 268925 sc-eQTL 7.68e-01 0.018 0.0608 0.656 CD4T L1
ENSG00000136014 USP44 911824 sc-eQTL 1.64e-01 0.12 0.0863 0.656 CD4T L1
ENSG00000139343 SNRPF 604372 sc-eQTL 6.37e-01 -0.0251 0.0531 0.656 CD4T L1
ENSG00000139350 NEDD1 -443923 sc-eQTL 7.00e-01 0.0253 0.0654 0.656 CD4T L1
ENSG00000059758 CDK17 62820 sc-eQTL 3.90e-02 -0.0858 0.0413 0.656 CD8T L1
ENSG00000111142 METAP2 989780 sc-eQTL 3.37e-01 0.0647 0.0672 0.656 CD8T L1
ENSG00000111144 LTA4H 419780 sc-eQTL 8.60e-01 0.00791 0.0448 0.656 CD8T L1
ENSG00000111145 ELK3 268925 sc-eQTL 2.34e-01 -0.0802 0.0672 0.656 CD8T L1
ENSG00000136014 USP44 911824 sc-eQTL 2.12e-01 0.0956 0.0764 0.656 CD8T L1
ENSG00000139343 SNRPF 604372 sc-eQTL 6.60e-01 0.0243 0.0552 0.656 CD8T L1
ENSG00000139350 NEDD1 -443923 sc-eQTL 8.63e-01 -0.0127 0.0735 0.656 CD8T L1
ENSG00000059758 CDK17 62820 sc-eQTL 1.34e-01 -0.12 0.0795 0.653 DC L1
ENSG00000084110 HAL 466935 sc-eQTL 6.19e-01 0.0452 0.0909 0.653 DC L1
ENSG00000111142 METAP2 989780 sc-eQTL 8.48e-01 -0.0192 0.1 0.653 DC L1
ENSG00000111144 LTA4H 419780 sc-eQTL 3.10e-01 0.0755 0.0742 0.653 DC L1
ENSG00000111145 ELK3 268925 sc-eQTL 9.86e-01 0.00157 0.0911 0.653 DC L1
ENSG00000139343 SNRPF 604372 sc-eQTL 8.14e-01 0.0179 0.0758 0.653 DC L1
ENSG00000139350 NEDD1 -443923 sc-eQTL 1.89e-01 -0.128 0.0969 0.653 DC L1
ENSG00000257715 AC007298.1 437977 sc-eQTL 1.88e-01 -0.116 0.0875 0.653 DC L1
ENSG00000059758 CDK17 62820 sc-eQTL 3.57e-01 -0.0585 0.0634 0.656 Mono L1
ENSG00000084110 HAL 466935 sc-eQTL 9.69e-01 0.00311 0.08 0.656 Mono L1
ENSG00000111142 METAP2 989780 sc-eQTL 5.16e-01 -0.0449 0.0691 0.656 Mono L1
ENSG00000111144 LTA4H 419780 sc-eQTL 3.94e-02 0.185 0.0895 0.656 Mono L1
ENSG00000111145 ELK3 268925 sc-eQTL 7.91e-01 -0.0161 0.0607 0.656 Mono L1
ENSG00000139343 SNRPF 604372 sc-eQTL 5.06e-01 -0.0381 0.0572 0.656 Mono L1
ENSG00000139350 NEDD1 -443923 sc-eQTL 1.65e-02 -0.209 0.0867 0.656 Mono L1
ENSG00000257715 AC007298.1 437977 sc-eQTL 1.62e-01 0.119 0.0848 0.656 Mono L1
ENSG00000059758 CDK17 62820 sc-eQTL 6.79e-01 -0.0196 0.0473 0.655 NK L1
ENSG00000111142 METAP2 989780 sc-eQTL 9.09e-01 0.00798 0.07 0.655 NK L1
ENSG00000111144 LTA4H 419780 sc-eQTL 4.58e-01 0.0597 0.0802 0.655 NK L1
ENSG00000111145 ELK3 268925 sc-eQTL 8.43e-01 0.0151 0.0762 0.655 NK L1
ENSG00000139343 SNRPF 604372 sc-eQTL 2.25e-01 0.0766 0.0629 0.655 NK L1
ENSG00000139350 NEDD1 -443923 sc-eQTL 5.66e-01 -0.0459 0.0799 0.655 NK L1
ENSG00000059758 CDK17 62820 sc-eQTL 4.24e-01 0.0315 0.0393 0.656 Other_T L1
ENSG00000074527 NTN4 672148 sc-eQTL 1.94e-01 -0.0945 0.0725 0.656 Other_T L1
ENSG00000111142 METAP2 989780 sc-eQTL 7.66e-01 0.0224 0.0751 0.656 Other_T L1
ENSG00000111144 LTA4H 419780 sc-eQTL 8.95e-01 0.0108 0.0823 0.656 Other_T L1
ENSG00000111145 ELK3 268925 sc-eQTL 8.24e-01 -0.0143 0.0642 0.656 Other_T L1
ENSG00000139343 SNRPF 604372 sc-eQTL 8.50e-01 -0.0113 0.0597 0.656 Other_T L1
ENSG00000139350 NEDD1 -443923 sc-eQTL 4.14e-02 -0.185 0.0899 0.656 Other_T L1
ENSG00000188596 CFAP54 -26271 sc-eQTL 1.28e-01 0.143 0.0936 0.656 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 62820 sc-eQTL 6.83e-01 0.0374 0.0914 0.64 B_Activated L2
ENSG00000111142 METAP2 989780 sc-eQTL 5.30e-01 0.0723 0.115 0.64 B_Activated L2
ENSG00000111144 LTA4H 419780 sc-eQTL 7.46e-02 0.184 0.103 0.64 B_Activated L2
ENSG00000111145 ELK3 268925 sc-eQTL 6.29e-01 0.053 0.11 0.64 B_Activated L2
ENSG00000136014 USP44 911824 sc-eQTL 5.18e-01 0.0545 0.0841 0.64 B_Activated L2
ENSG00000139343 SNRPF 604372 sc-eQTL 2.40e-01 0.121 0.103 0.64 B_Activated L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 7.28e-01 -0.0377 0.108 0.64 B_Activated L2
ENSG00000059758 CDK17 62820 sc-eQTL 8.04e-01 0.0196 0.0786 0.655 B_Intermediate L2
ENSG00000111142 METAP2 989780 sc-eQTL 7.91e-01 -0.0239 0.0902 0.655 B_Intermediate L2
ENSG00000111144 LTA4H 419780 sc-eQTL 7.46e-01 0.0247 0.0761 0.655 B_Intermediate L2
ENSG00000111145 ELK3 268925 sc-eQTL 1.20e-01 -0.133 0.0854 0.655 B_Intermediate L2
ENSG00000136014 USP44 911824 sc-eQTL 1.06e-03 -0.328 0.0987 0.655 B_Intermediate L2
ENSG00000139343 SNRPF 604372 sc-eQTL 7.44e-01 0.0279 0.0855 0.655 B_Intermediate L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 5.62e-01 0.0581 0.1 0.655 B_Intermediate L2
ENSG00000059758 CDK17 62820 sc-eQTL 4.71e-01 -0.0547 0.0756 0.659 B_Memory L2
ENSG00000111142 METAP2 989780 sc-eQTL 8.81e-01 0.0147 0.0985 0.659 B_Memory L2
ENSG00000111144 LTA4H 419780 sc-eQTL 4.13e-01 -0.0715 0.0873 0.659 B_Memory L2
ENSG00000111145 ELK3 268925 sc-eQTL 4.27e-02 0.173 0.0851 0.659 B_Memory L2
ENSG00000136014 USP44 911824 sc-eQTL 7.37e-02 -0.168 0.0936 0.659 B_Memory L2
ENSG00000139343 SNRPF 604372 sc-eQTL 1.65e-01 -0.126 0.0907 0.659 B_Memory L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 8.95e-02 0.171 0.1 0.659 B_Memory L2
ENSG00000059758 CDK17 62820 sc-eQTL 3.09e-01 -0.0635 0.0622 0.656 B_Naive1 L2
ENSG00000111142 METAP2 989780 sc-eQTL 9.32e-01 -0.00686 0.0807 0.656 B_Naive1 L2
ENSG00000111144 LTA4H 419780 sc-eQTL 9.47e-01 -0.00437 0.0653 0.656 B_Naive1 L2
ENSG00000111145 ELK3 268925 sc-eQTL 5.98e-01 -0.0407 0.0772 0.656 B_Naive1 L2
ENSG00000136014 USP44 911824 sc-eQTL 8.83e-01 -0.0143 0.0971 0.656 B_Naive1 L2
ENSG00000139343 SNRPF 604372 sc-eQTL 9.91e-01 -0.000823 0.0751 0.656 B_Naive1 L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 2.21e-01 0.118 0.096 0.656 B_Naive1 L2
ENSG00000059758 CDK17 62820 sc-eQTL 1.60e-01 0.111 0.0787 0.657 B_Naive2 L2
ENSG00000111142 METAP2 989780 sc-eQTL 3.49e-01 -0.0893 0.0952 0.657 B_Naive2 L2
ENSG00000111144 LTA4H 419780 sc-eQTL 2.72e-01 0.0823 0.0747 0.657 B_Naive2 L2
ENSG00000111145 ELK3 268925 sc-eQTL 3.61e-01 0.0807 0.0881 0.657 B_Naive2 L2
ENSG00000136014 USP44 911824 sc-eQTL 6.34e-01 -0.0455 0.0953 0.657 B_Naive2 L2
ENSG00000139343 SNRPF 604372 sc-eQTL 9.84e-01 -0.00181 0.0877 0.657 B_Naive2 L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 1.59e-01 -0.147 0.104 0.657 B_Naive2 L2
ENSG00000059758 CDK17 62820 sc-eQTL 9.16e-01 0.00763 0.0727 0.655 CD4_CTL L2
ENSG00000111142 METAP2 989780 sc-eQTL 1.02e-01 -0.17 0.103 0.655 CD4_CTL L2
ENSG00000111144 LTA4H 419780 sc-eQTL 7.72e-01 0.0297 0.102 0.655 CD4_CTL L2
ENSG00000111145 ELK3 268925 sc-eQTL 6.61e-01 -0.0455 0.104 0.655 CD4_CTL L2
ENSG00000136014 USP44 911824 sc-eQTL 4.41e-01 0.0639 0.0827 0.655 CD4_CTL L2
ENSG00000139343 SNRPF 604372 sc-eQTL 3.58e-01 0.083 0.09 0.655 CD4_CTL L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 2.61e-02 -0.231 0.103 0.655 CD4_CTL L2
ENSG00000059758 CDK17 62820 sc-eQTL 2.36e-01 -0.0529 0.0445 0.656 CD4_Naive L2
ENSG00000111142 METAP2 989780 sc-eQTL 6.26e-01 -0.0315 0.0644 0.656 CD4_Naive L2
ENSG00000111144 LTA4H 419780 sc-eQTL 3.83e-01 0.0563 0.0645 0.656 CD4_Naive L2
ENSG00000111145 ELK3 268925 sc-eQTL 5.57e-01 -0.038 0.0646 0.656 CD4_Naive L2
ENSG00000136014 USP44 911824 sc-eQTL 2.26e-01 0.11 0.0902 0.656 CD4_Naive L2
ENSG00000139343 SNRPF 604372 sc-eQTL 2.05e-01 -0.0727 0.0572 0.656 CD4_Naive L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 7.59e-01 -0.0217 0.0707 0.656 CD4_Naive L2
ENSG00000059758 CDK17 62820 sc-eQTL 4.32e-01 -0.0346 0.0439 0.656 CD4_TCM L2
ENSG00000111142 METAP2 989780 sc-eQTL 9.72e-01 -0.00262 0.0748 0.656 CD4_TCM L2
ENSG00000111144 LTA4H 419780 sc-eQTL 7.29e-01 0.0259 0.0745 0.656 CD4_TCM L2
ENSG00000111145 ELK3 268925 sc-eQTL 2.30e-01 0.088 0.0731 0.656 CD4_TCM L2
ENSG00000136014 USP44 911824 sc-eQTL 4.23e-01 0.0813 0.101 0.656 CD4_TCM L2
ENSG00000139343 SNRPF 604372 sc-eQTL 2.84e-01 0.0645 0.06 0.656 CD4_TCM L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 1.51e-01 0.118 0.0818 0.656 CD4_TCM L2
ENSG00000059758 CDK17 62820 sc-eQTL 1.71e-01 0.0738 0.0537 0.656 CD4_TEM L2
ENSG00000111142 METAP2 989780 sc-eQTL 7.07e-01 -0.0339 0.0901 0.656 CD4_TEM L2
ENSG00000111144 LTA4H 419780 sc-eQTL 7.06e-01 -0.0315 0.0833 0.656 CD4_TEM L2
ENSG00000111145 ELK3 268925 sc-eQTL 4.20e-01 0.0624 0.0773 0.656 CD4_TEM L2
ENSG00000136014 USP44 911824 sc-eQTL 9.37e-01 -0.00756 0.0952 0.656 CD4_TEM L2
ENSG00000139343 SNRPF 604372 sc-eQTL 3.47e-01 -0.0762 0.0809 0.656 CD4_TEM L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 1.94e-01 -0.125 0.0957 0.656 CD4_TEM L2
ENSG00000059758 CDK17 62820 sc-eQTL 7.85e-01 -0.0143 0.0523 0.656 CD8_CTL L2
ENSG00000111142 METAP2 989780 sc-eQTL 1.42e-01 0.132 0.0899 0.656 CD8_CTL L2
ENSG00000111144 LTA4H 419780 sc-eQTL 6.52e-01 0.0427 0.0943 0.656 CD8_CTL L2
ENSG00000111145 ELK3 268925 sc-eQTL 2.88e-01 0.0914 0.0857 0.656 CD8_CTL L2
ENSG00000136014 USP44 911824 sc-eQTL 3.52e-01 0.0891 0.0956 0.656 CD8_CTL L2
ENSG00000139343 SNRPF 604372 sc-eQTL 7.41e-01 0.0261 0.079 0.656 CD8_CTL L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 8.49e-01 0.0169 0.0886 0.656 CD8_CTL L2
ENSG00000059758 CDK17 62820 sc-eQTL 2.14e-02 -0.144 0.062 0.656 CD8_Naive L2
ENSG00000111142 METAP2 989780 sc-eQTL 7.42e-01 0.0275 0.0834 0.656 CD8_Naive L2
ENSG00000111144 LTA4H 419780 sc-eQTL 5.27e-01 0.0476 0.0752 0.656 CD8_Naive L2
ENSG00000111145 ELK3 268925 sc-eQTL 7.06e-01 -0.0301 0.0796 0.656 CD8_Naive L2
ENSG00000136014 USP44 911824 sc-eQTL 1.52e-01 0.12 0.0832 0.656 CD8_Naive L2
ENSG00000139343 SNRPF 604372 sc-eQTL 7.09e-01 -0.0268 0.0715 0.656 CD8_Naive L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 7.18e-01 0.0308 0.0852 0.656 CD8_Naive L2
ENSG00000059758 CDK17 62820 sc-eQTL 3.48e-01 0.063 0.0669 0.653 CD8_TCM L2
ENSG00000111142 METAP2 989780 sc-eQTL 2.92e-01 -0.106 0.0998 0.653 CD8_TCM L2
ENSG00000111144 LTA4H 419780 sc-eQTL 5.20e-01 0.0636 0.0985 0.653 CD8_TCM L2
ENSG00000111145 ELK3 268925 sc-eQTL 7.43e-02 -0.149 0.0828 0.653 CD8_TCM L2
ENSG00000136014 USP44 911824 sc-eQTL 2.86e-01 -0.0965 0.0902 0.653 CD8_TCM L2
ENSG00000139343 SNRPF 604372 sc-eQTL 6.16e-01 0.0482 0.0961 0.653 CD8_TCM L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 7.04e-01 -0.0358 0.0941 0.653 CD8_TCM L2
ENSG00000059758 CDK17 62820 sc-eQTL 6.39e-01 -0.04 0.0852 0.651 CD8_TEM L2
ENSG00000111142 METAP2 989780 sc-eQTL 7.74e-01 0.0288 0.1 0.651 CD8_TEM L2
ENSG00000111144 LTA4H 419780 sc-eQTL 7.56e-01 0.0325 0.104 0.651 CD8_TEM L2
ENSG00000111145 ELK3 268925 sc-eQTL 6.36e-01 0.0486 0.103 0.651 CD8_TEM L2
ENSG00000136014 USP44 911824 sc-eQTL 6.79e-01 -0.0362 0.0873 0.651 CD8_TEM L2
ENSG00000139343 SNRPF 604372 sc-eQTL 3.22e-01 0.0946 0.0952 0.651 CD8_TEM L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 3.74e-01 -0.0921 0.103 0.651 CD8_TEM L2
ENSG00000059758 CDK17 62820 sc-eQTL 7.06e-01 -0.0214 0.0566 0.654 MAIT L2
ENSG00000074527 NTN4 672148 sc-eQTL 8.64e-02 -0.131 0.0758 0.654 MAIT L2
ENSG00000111142 METAP2 989780 sc-eQTL 1.55e-01 0.137 0.0957 0.654 MAIT L2
ENSG00000111144 LTA4H 419780 sc-eQTL 4.77e-01 0.0622 0.0874 0.654 MAIT L2
ENSG00000111145 ELK3 268925 sc-eQTL 4.25e-01 -0.0587 0.0733 0.654 MAIT L2
ENSG00000139343 SNRPF 604372 sc-eQTL 6.92e-01 -0.0337 0.0851 0.654 MAIT L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 2.04e-01 -0.121 0.0952 0.654 MAIT L2
ENSG00000188596 CFAP54 -26271 sc-eQTL 3.74e-01 0.0842 0.0945 0.654 MAIT L2
ENSG00000059758 CDK17 62820 sc-eQTL 1.11e-02 0.152 0.0592 0.656 NK_CD56bright L2
ENSG00000111142 METAP2 989780 sc-eQTL 3.47e-01 0.0956 0.101 0.656 NK_CD56bright L2
ENSG00000111144 LTA4H 419780 sc-eQTL 3.25e-01 0.0876 0.0888 0.656 NK_CD56bright L2
ENSG00000111145 ELK3 268925 sc-eQTL 8.26e-01 -0.0208 0.0945 0.656 NK_CD56bright L2
ENSG00000139343 SNRPF 604372 sc-eQTL 6.24e-01 0.0485 0.0988 0.656 NK_CD56bright L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 3.72e-01 -0.0891 0.0995 0.656 NK_CD56bright L2
ENSG00000059758 CDK17 62820 sc-eQTL 7.56e-01 -0.0158 0.051 0.655 NK_CD56dim L2
ENSG00000111142 METAP2 989780 sc-eQTL 3.31e-01 0.087 0.0892 0.655 NK_CD56dim L2
ENSG00000111144 LTA4H 419780 sc-eQTL 8.21e-01 -0.0209 0.0921 0.655 NK_CD56dim L2
ENSG00000111145 ELK3 268925 sc-eQTL 7.73e-01 -0.0236 0.0816 0.655 NK_CD56dim L2
ENSG00000139343 SNRPF 604372 sc-eQTL 7.78e-01 0.0219 0.0776 0.655 NK_CD56dim L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 1.71e-01 -0.122 0.089 0.655 NK_CD56dim L2
ENSG00000059758 CDK17 62820 sc-eQTL 2.77e-01 -0.0876 0.0804 0.658 NK_HLA L2
ENSG00000111142 METAP2 989780 sc-eQTL 5.41e-01 -0.0622 0.102 0.658 NK_HLA L2
ENSG00000111144 LTA4H 419780 sc-eQTL 7.65e-01 0.0317 0.106 0.658 NK_HLA L2
ENSG00000111145 ELK3 268925 sc-eQTL 4.88e-01 0.0681 0.098 0.658 NK_HLA L2
ENSG00000139343 SNRPF 604372 sc-eQTL 5.18e-01 0.0661 0.102 0.658 NK_HLA L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 5.70e-01 -0.0549 0.0967 0.658 NK_HLA L2
ENSG00000059758 CDK17 62820 sc-eQTL 2.15e-01 -0.0692 0.0557 0.655 NK_cytokine L2
ENSG00000111142 METAP2 989780 sc-eQTL 7.86e-01 0.0252 0.0928 0.655 NK_cytokine L2
ENSG00000111144 LTA4H 419780 sc-eQTL 2.54e-01 0.108 0.0942 0.655 NK_cytokine L2
ENSG00000111145 ELK3 268925 sc-eQTL 9.28e-01 -0.00816 0.0904 0.655 NK_cytokine L2
ENSG00000139343 SNRPF 604372 sc-eQTL 3.24e-01 0.0756 0.0764 0.655 NK_cytokine L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 1.29e-01 0.144 0.0942 0.655 NK_cytokine L2
ENSG00000059758 CDK17 62820 sc-eQTL 2.34e-01 -0.141 0.118 0.678 PB L2
ENSG00000111142 METAP2 989780 sc-eQTL 8.82e-01 -0.0207 0.139 0.678 PB L2
ENSG00000111144 LTA4H 419780 sc-eQTL 1.44e-01 0.153 0.104 0.678 PB L2
ENSG00000111145 ELK3 268925 sc-eQTL 1.75e-01 0.182 0.133 0.678 PB L2
ENSG00000136014 USP44 911824 sc-eQTL 4.64e-01 0.0913 0.124 0.678 PB L2
ENSG00000139343 SNRPF 604372 sc-eQTL 7.95e-01 -0.0342 0.131 0.678 PB L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 5.37e-01 -0.0965 0.156 0.678 PB L2
ENSG00000059758 CDK17 62820 sc-eQTL 8.70e-01 0.01 0.0615 0.654 Pro_T L2
ENSG00000074527 NTN4 672148 sc-eQTL 9.79e-01 -0.0018 0.0691 0.654 Pro_T L2
ENSG00000111142 METAP2 989780 sc-eQTL 7.72e-01 -0.0237 0.0815 0.654 Pro_T L2
ENSG00000111144 LTA4H 419780 sc-eQTL 1.78e-01 0.109 0.0809 0.654 Pro_T L2
ENSG00000111145 ELK3 268925 sc-eQTL 6.65e-01 0.0426 0.0982 0.654 Pro_T L2
ENSG00000139343 SNRPF 604372 sc-eQTL 4.55e-01 0.0463 0.0619 0.654 Pro_T L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 9.10e-01 -0.0102 0.09 0.654 Pro_T L2
ENSG00000188596 CFAP54 -26271 sc-eQTL 4.94e-01 0.0499 0.0727 0.654 Pro_T L2
ENSG00000059758 CDK17 62820 sc-eQTL 8.01e-01 0.017 0.0673 0.656 Treg L2
ENSG00000111142 METAP2 989780 sc-eQTL 4.09e-01 0.0757 0.0915 0.656 Treg L2
ENSG00000111144 LTA4H 419780 sc-eQTL 8.30e-01 -0.0183 0.0853 0.656 Treg L2
ENSG00000111145 ELK3 268925 sc-eQTL 2.66e-01 -0.0859 0.077 0.656 Treg L2
ENSG00000136014 USP44 911824 sc-eQTL 5.96e-01 0.0461 0.0867 0.656 Treg L2
ENSG00000139343 SNRPF 604372 sc-eQTL 2.70e-01 0.0988 0.0892 0.656 Treg L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 7.14e-01 0.0366 0.0998 0.656 Treg L2
ENSG00000059758 CDK17 62820 sc-eQTL 5.66e-01 -0.049 0.0852 0.654 cDC L2
ENSG00000084110 HAL 466935 sc-eQTL 4.42e-01 0.0682 0.0885 0.654 cDC L2
ENSG00000111142 METAP2 989780 sc-eQTL 7.40e-01 0.0356 0.107 0.654 cDC L2
ENSG00000111144 LTA4H 419780 sc-eQTL 3.07e-01 0.0777 0.0758 0.654 cDC L2
ENSG00000111145 ELK3 268925 sc-eQTL 6.48e-01 0.0459 0.1 0.654 cDC L2
ENSG00000139343 SNRPF 604372 sc-eQTL 8.32e-01 0.0178 0.084 0.654 cDC L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 9.03e-01 -0.0125 0.102 0.654 cDC L2
ENSG00000257715 AC007298.1 437977 sc-eQTL 4.19e-01 -0.0698 0.0861 0.654 cDC L2
ENSG00000059758 CDK17 62820 sc-eQTL 5.22e-02 -0.143 0.073 0.656 cMono_IL1B L2
ENSG00000084110 HAL 466935 sc-eQTL 9.01e-01 -0.00998 0.0804 0.656 cMono_IL1B L2
ENSG00000111142 METAP2 989780 sc-eQTL 8.73e-02 -0.142 0.0828 0.656 cMono_IL1B L2
ENSG00000111144 LTA4H 419780 sc-eQTL 1.61e-02 0.208 0.0856 0.656 cMono_IL1B L2
ENSG00000111145 ELK3 268925 sc-eQTL 4.07e-01 -0.0555 0.0668 0.656 cMono_IL1B L2
ENSG00000139343 SNRPF 604372 sc-eQTL 1.52e-01 -0.0987 0.0687 0.656 cMono_IL1B L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 1.40e-02 -0.232 0.0937 0.656 cMono_IL1B L2
ENSG00000257715 AC007298.1 437977 sc-eQTL 3.71e-01 0.0793 0.0885 0.656 cMono_IL1B L2
ENSG00000059758 CDK17 62820 sc-eQTL 4.36e-01 -0.0644 0.0825 0.656 cMono_S100A L2
ENSG00000084110 HAL 466935 sc-eQTL 1.77e-01 0.125 0.0923 0.656 cMono_S100A L2
ENSG00000111142 METAP2 989780 sc-eQTL 1.37e-01 0.139 0.0933 0.656 cMono_S100A L2
ENSG00000111144 LTA4H 419780 sc-eQTL 2.15e-01 0.115 0.0923 0.656 cMono_S100A L2
ENSG00000111145 ELK3 268925 sc-eQTL 8.53e-01 0.014 0.0754 0.656 cMono_S100A L2
ENSG00000139343 SNRPF 604372 sc-eQTL 7.11e-01 0.0277 0.0745 0.656 cMono_S100A L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 3.56e-02 -0.211 0.0996 0.656 cMono_S100A L2
ENSG00000257715 AC007298.1 437977 sc-eQTL 3.62e-01 0.0863 0.0945 0.656 cMono_S100A L2
ENSG00000059758 CDK17 62820 sc-eQTL 9.20e-02 0.14 0.0823 0.642 gdT L2
ENSG00000074527 NTN4 672148 sc-eQTL 9.67e-01 0.00392 0.0954 0.642 gdT L2
ENSG00000111142 METAP2 989780 sc-eQTL 4.91e-01 0.0822 0.119 0.642 gdT L2
ENSG00000111144 LTA4H 419780 sc-eQTL 8.16e-01 -0.0289 0.124 0.642 gdT L2
ENSG00000111145 ELK3 268925 sc-eQTL 3.95e-01 0.0979 0.115 0.642 gdT L2
ENSG00000139343 SNRPF 604372 sc-eQTL 8.04e-02 0.193 0.11 0.642 gdT L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 3.31e-01 0.119 0.122 0.642 gdT L2
ENSG00000188596 CFAP54 -26271 sc-eQTL 6.57e-01 0.0478 0.107 0.642 gdT L2
ENSG00000059758 CDK17 62820 sc-eQTL 1.20e-01 -0.146 0.0933 0.651 intMono L2
ENSG00000084110 HAL 466935 sc-eQTL 8.31e-01 -0.0203 0.0949 0.651 intMono L2
ENSG00000111142 METAP2 989780 sc-eQTL 4.78e-01 -0.0763 0.107 0.651 intMono L2
ENSG00000111144 LTA4H 419780 sc-eQTL 5.21e-02 0.188 0.0965 0.651 intMono L2
ENSG00000111145 ELK3 268925 sc-eQTL 8.52e-01 0.0162 0.0867 0.651 intMono L2
ENSG00000139343 SNRPF 604372 sc-eQTL 4.17e-01 -0.0753 0.0926 0.651 intMono L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 5.88e-01 -0.0522 0.0963 0.651 intMono L2
ENSG00000257715 AC007298.1 437977 sc-eQTL 1.19e-01 0.151 0.0963 0.651 intMono L2
ENSG00000059758 CDK17 62820 sc-eQTL 5.90e-01 -0.0402 0.0744 0.643 ncMono L2
ENSG00000084110 HAL 466935 sc-eQTL 2.28e-01 -0.1 0.0828 0.643 ncMono L2
ENSG00000111142 METAP2 989780 sc-eQTL 5.32e-01 0.0629 0.1 0.643 ncMono L2
ENSG00000111144 LTA4H 419780 sc-eQTL 1.76e-01 0.125 0.0922 0.643 ncMono L2
ENSG00000111145 ELK3 268925 sc-eQTL 7.05e-01 -0.0301 0.0795 0.643 ncMono L2
ENSG00000139343 SNRPF 604372 sc-eQTL 7.36e-01 0.0275 0.0812 0.643 ncMono L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 5.87e-01 0.0469 0.0862 0.643 ncMono L2
ENSG00000257715 AC007298.1 437977 sc-eQTL 4.40e-01 -0.0761 0.0983 0.643 ncMono L2
ENSG00000059758 CDK17 62820 sc-eQTL 3.56e-02 -0.205 0.0967 0.655 pDC L2
ENSG00000084110 HAL 466935 sc-eQTL 1.73e-01 0.113 0.0823 0.655 pDC L2
ENSG00000111142 METAP2 989780 sc-eQTL 8.50e-01 -0.0212 0.112 0.655 pDC L2
ENSG00000111144 LTA4H 419780 sc-eQTL 3.02e-02 0.2 0.0913 0.655 pDC L2
ENSG00000111145 ELK3 268925 sc-eQTL 6.70e-01 0.0484 0.113 0.655 pDC L2
ENSG00000139343 SNRPF 604372 sc-eQTL 3.30e-01 0.0965 0.0986 0.655 pDC L2
ENSG00000139350 NEDD1 -443923 sc-eQTL 6.19e-01 -0.0543 0.109 0.655 pDC L2
ENSG00000257715 AC007298.1 437977 sc-eQTL 6.55e-01 0.0419 0.0936 0.655 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 62820 sc-eQTL 8.45e-01 -0.013 0.0662 0.656 B_Memory LOneK1K
ENSG00000111142 METAP2 989780 sc-eQTL 7.81e-01 -0.0256 0.0921 0.656 B_Memory LOneK1K
ENSG00000111144 LTA4H 419780 sc-eQTL 5.65e-01 0.0396 0.0687 0.656 B_Memory LOneK1K
ENSG00000111145 ELK3 268925 sc-eQTL 4.29e-01 0.0622 0.0785 0.656 B_Memory LOneK1K
ENSG00000136014 USP44 911824 sc-eQTL 1.43e-03 -0.309 0.0956 0.656 B_Memory LOneK1K
ENSG00000139343 SNRPF 604372 sc-eQTL 3.83e-01 -0.0665 0.076 0.656 B_Memory LOneK1K
ENSG00000139350 NEDD1 -443923 sc-eQTL 3.99e-02 0.204 0.0989 0.656 B_Memory LOneK1K
ENSG00000059758 CDK17 62820 sc-eQTL 8.61e-01 -0.00985 0.0562 0.656 B_Naive LOneK1K
ENSG00000111142 METAP2 989780 sc-eQTL 3.28e-01 -0.0745 0.0759 0.656 B_Naive LOneK1K
ENSG00000111144 LTA4H 419780 sc-eQTL 4.89e-01 0.0437 0.063 0.656 B_Naive LOneK1K
ENSG00000111145 ELK3 268925 sc-eQTL 7.99e-01 -0.0183 0.0718 0.656 B_Naive LOneK1K
ENSG00000136014 USP44 911824 sc-eQTL 6.68e-01 -0.0377 0.0878 0.656 B_Naive LOneK1K
ENSG00000139343 SNRPF 604372 sc-eQTL 8.66e-01 -0.0122 0.0723 0.656 B_Naive LOneK1K
ENSG00000139350 NEDD1 -443923 sc-eQTL 8.64e-01 -0.0164 0.0957 0.656 B_Naive LOneK1K
ENSG00000059758 CDK17 62820 sc-eQTL 3.92e-02 -0.136 0.0658 0.656 CD14_Mono LOneK1K
ENSG00000084110 HAL 466935 sc-eQTL 8.05e-01 0.0199 0.0805 0.656 CD14_Mono LOneK1K
ENSG00000111142 METAP2 989780 sc-eQTL 7.27e-01 -0.0264 0.0758 0.656 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 419780 sc-eQTL 2.10e-02 0.203 0.0872 0.656 CD14_Mono LOneK1K
ENSG00000111145 ELK3 268925 sc-eQTL 7.60e-01 -0.0195 0.0638 0.656 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 604372 sc-eQTL 4.55e-01 -0.0461 0.0615 0.656 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -443923 sc-eQTL 5.81e-03 -0.264 0.0949 0.656 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 437977 sc-eQTL 1.24e-01 0.137 0.089 0.656 CD14_Mono LOneK1K
ENSG00000059758 CDK17 62820 sc-eQTL 2.17e-01 -0.0836 0.0676 0.655 CD16_Mono LOneK1K
ENSG00000084110 HAL 466935 sc-eQTL 3.43e-01 -0.076 0.08 0.655 CD16_Mono LOneK1K
ENSG00000111142 METAP2 989780 sc-eQTL 7.04e-01 -0.0346 0.0909 0.655 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 419780 sc-eQTL 9.53e-02 0.148 0.0883 0.655 CD16_Mono LOneK1K
ENSG00000111145 ELK3 268925 sc-eQTL 9.13e-01 -0.00716 0.0658 0.655 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 604372 sc-eQTL 9.79e-01 -0.00179 0.0678 0.655 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -443923 sc-eQTL 7.06e-01 -0.0328 0.087 0.655 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 437977 sc-eQTL 9.32e-01 0.00781 0.0921 0.655 CD16_Mono LOneK1K
ENSG00000059758 CDK17 62820 sc-eQTL 2.07e-01 -0.0603 0.0477 0.655 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 989780 sc-eQTL 5.62e-01 0.0422 0.0727 0.655 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 419780 sc-eQTL 8.33e-01 0.0176 0.0832 0.655 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 268925 sc-eQTL 9.37e-01 0.006 0.0761 0.655 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 604372 sc-eQTL 4.21e-01 0.0525 0.065 0.655 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -443923 sc-eQTL 6.80e-01 -0.0336 0.0812 0.655 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000139350 NEDD1 -443923 eQTL 7.57e-10 -0.155 0.0249 0.0 0.0 0.343
ENSG00000188596 CFAP54 -26275 eQTL 1.57e-06 -0.101 0.0209 0.0013 0.00115 0.343

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000139350 NEDD1 -443923 1.24e-06 9.01e-07 1.57e-07 4.88e-07 1.18e-07 3.2e-07 7.53e-07 1.45e-07 8.32e-07 3.1e-07 1.1e-06 5.53e-07 1.54e-06 2.57e-07 3.94e-07 4.19e-07 5.41e-07 5.05e-07 2.92e-07 1.9e-07 2.51e-07 5.83e-07 5.77e-07 3.06e-07 1.79e-06 2.54e-07 4.62e-07 2.69e-07 6.19e-07 9.2e-07 4.65e-07 5.77e-08 5.63e-08 2.22e-07 3.29e-07 2.15e-07 1.64e-07 1.1e-07 1.6e-07 2.99e-08 1.04e-07 1.53e-06 7.37e-08 1.07e-08 1.61e-07 1.42e-08 8.24e-08 1.26e-08 6.15e-08
ENSG00000188596 CFAP54 -26275 1.72e-05 2.04e-05 3.46e-06 1.13e-05 2.97e-06 7.88e-06 2.46e-05 2.45e-06 1.73e-05 8.48e-06 2.18e-05 8.43e-06 3.08e-05 8.04e-06 5.16e-06 1.05e-05 9.2e-06 1.54e-05 4.67e-06 4.75e-06 8.57e-06 1.78e-05 1.81e-05 5.76e-06 2.97e-05 5.52e-06 8.02e-06 7.57e-06 1.8e-05 2.15e-05 1.23e-05 1.51e-06 1.66e-06 4.56e-06 7.74e-06 4.48e-06 2.27e-06 2.74e-06 3.64e-06 2.66e-06 1.62e-06 2.39e-05 2.64e-06 2.73e-07 1.91e-06 2.56e-06 2.48e-06 1.26e-06 1.08e-06