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Genes within 1Mb (chr12:96454873:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 54393 sc-eQTL 3.61e-01 -0.0444 0.0485 0.709 B L1
ENSG00000111142 METAP2 981353 sc-eQTL 1.62e-01 -0.096 0.0684 0.709 B L1
ENSG00000111144 LTA4H 411353 sc-eQTL 6.04e-01 0.0313 0.0603 0.709 B L1
ENSG00000111145 ELK3 260498 sc-eQTL 5.88e-01 -0.0348 0.0642 0.709 B L1
ENSG00000136014 USP44 903397 sc-eQTL 1.11e-01 -0.126 0.0787 0.709 B L1
ENSG00000139343 SNRPF 595945 sc-eQTL 6.59e-01 0.0257 0.0583 0.709 B L1
ENSG00000139350 NEDD1 -452350 sc-eQTL 1.68e-01 -0.117 0.0848 0.709 B L1
ENSG00000059758 CDK17 54393 sc-eQTL 2.88e-02 -0.0856 0.0389 0.709 CD4T L1
ENSG00000111142 METAP2 981353 sc-eQTL 9.03e-01 0.00667 0.0549 0.709 CD4T L1
ENSG00000111144 LTA4H 411353 sc-eQTL 9.66e-01 -0.00229 0.054 0.709 CD4T L1
ENSG00000111145 ELK3 260498 sc-eQTL 8.96e-01 0.00765 0.0585 0.709 CD4T L1
ENSG00000136014 USP44 903397 sc-eQTL 2.25e-01 0.101 0.0832 0.709 CD4T L1
ENSG00000139343 SNRPF 595945 sc-eQTL 4.53e-01 -0.0384 0.0511 0.709 CD4T L1
ENSG00000139350 NEDD1 -452350 sc-eQTL 1.37e-01 0.0936 0.0626 0.709 CD4T L1
ENSG00000059758 CDK17 54393 sc-eQTL 1.12e-02 -0.102 0.04 0.709 CD8T L1
ENSG00000111142 METAP2 981353 sc-eQTL 2.05e-01 0.0829 0.0652 0.709 CD8T L1
ENSG00000111144 LTA4H 411353 sc-eQTL 9.30e-01 -0.00385 0.0436 0.709 CD8T L1
ENSG00000111145 ELK3 260498 sc-eQTL 7.71e-01 0.0191 0.0656 0.709 CD8T L1
ENSG00000136014 USP44 903397 sc-eQTL 4.31e-01 0.0588 0.0745 0.709 CD8T L1
ENSG00000139343 SNRPF 595945 sc-eQTL 6.97e-01 0.0209 0.0537 0.709 CD8T L1
ENSG00000139350 NEDD1 -452350 sc-eQTL 7.27e-01 0.0249 0.0714 0.709 CD8T L1
ENSG00000059758 CDK17 54393 sc-eQTL 1.07e-01 -0.123 0.0759 0.705 DC L1
ENSG00000084110 HAL 458508 sc-eQTL 1.00e-01 -0.143 0.0864 0.705 DC L1
ENSG00000111142 METAP2 981353 sc-eQTL 5.93e-01 0.0513 0.0958 0.705 DC L1
ENSG00000111144 LTA4H 411353 sc-eQTL 8.72e-01 0.0115 0.0711 0.705 DC L1
ENSG00000111145 ELK3 260498 sc-eQTL 2.15e-01 -0.108 0.0868 0.705 DC L1
ENSG00000139343 SNRPF 595945 sc-eQTL 8.27e-01 0.0159 0.0725 0.705 DC L1
ENSG00000139350 NEDD1 -452350 sc-eQTL 7.88e-01 -0.0251 0.093 0.705 DC L1
ENSG00000257715 AC007298.1 429550 sc-eQTL 3.32e-01 -0.0816 0.0838 0.705 DC L1
ENSG00000059758 CDK17 54393 sc-eQTL 9.23e-01 0.00584 0.0602 0.709 Mono L1
ENSG00000084110 HAL 458508 sc-eQTL 1.56e-01 -0.107 0.0754 0.709 Mono L1
ENSG00000111142 METAP2 981353 sc-eQTL 9.91e-02 -0.108 0.0651 0.709 Mono L1
ENSG00000111144 LTA4H 411353 sc-eQTL 7.60e-01 -0.0262 0.0855 0.709 Mono L1
ENSG00000111145 ELK3 260498 sc-eQTL 9.31e-01 -0.00499 0.0575 0.709 Mono L1
ENSG00000139343 SNRPF 595945 sc-eQTL 7.54e-01 -0.017 0.0542 0.709 Mono L1
ENSG00000139350 NEDD1 -452350 sc-eQTL 1.95e-01 -0.108 0.0829 0.709 Mono L1
ENSG00000257715 AC007298.1 429550 sc-eQTL 5.22e-01 -0.0517 0.0806 0.709 Mono L1
ENSG00000059758 CDK17 54393 sc-eQTL 3.75e-01 0.0407 0.0458 0.708 NK L1
ENSG00000111142 METAP2 981353 sc-eQTL 9.09e-01 0.00781 0.068 0.708 NK L1
ENSG00000111144 LTA4H 411353 sc-eQTL 7.49e-01 -0.0249 0.0779 0.708 NK L1
ENSG00000111145 ELK3 260498 sc-eQTL 6.85e-01 -0.03 0.0739 0.708 NK L1
ENSG00000139343 SNRPF 595945 sc-eQTL 3.39e-01 -0.0586 0.0612 0.708 NK L1
ENSG00000139350 NEDD1 -452350 sc-eQTL 4.58e-01 -0.0576 0.0775 0.708 NK L1
ENSG00000059758 CDK17 54393 sc-eQTL 1.40e-01 0.0568 0.0383 0.709 Other_T L1
ENSG00000074527 NTN4 663721 sc-eQTL 2.42e-01 -0.0833 0.071 0.709 Other_T L1
ENSG00000111142 METAP2 981353 sc-eQTL 8.48e-01 0.0141 0.0735 0.709 Other_T L1
ENSG00000111144 LTA4H 411353 sc-eQTL 6.87e-01 -0.0325 0.0805 0.709 Other_T L1
ENSG00000111145 ELK3 260498 sc-eQTL 4.49e-01 -0.0476 0.0628 0.709 Other_T L1
ENSG00000139343 SNRPF 595945 sc-eQTL 9.82e-01 -0.00134 0.0584 0.709 Other_T L1
ENSG00000139350 NEDD1 -452350 sc-eQTL 5.65e-01 -0.0512 0.0889 0.709 Other_T L1
ENSG00000188596 CFAP54 -34698 sc-eQTL 8.61e-01 0.0161 0.0921 0.709 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 54393 sc-eQTL 8.82e-01 -0.0129 0.0869 0.702 B_Activated L2
ENSG00000111142 METAP2 981353 sc-eQTL 1.63e-01 0.152 0.109 0.702 B_Activated L2
ENSG00000111144 LTA4H 411353 sc-eQTL 3.76e-01 0.0871 0.0982 0.702 B_Activated L2
ENSG00000111145 ELK3 260498 sc-eQTL 3.60e-01 0.0954 0.104 0.702 B_Activated L2
ENSG00000136014 USP44 903397 sc-eQTL 1.09e-01 0.128 0.0794 0.702 B_Activated L2
ENSG00000139343 SNRPF 595945 sc-eQTL 2.13e-01 0.122 0.0978 0.702 B_Activated L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 5.08e-01 -0.0681 0.103 0.702 B_Activated L2
ENSG00000059758 CDK17 54393 sc-eQTL 4.89e-01 -0.0518 0.0746 0.708 B_Intermediate L2
ENSG00000111142 METAP2 981353 sc-eQTL 9.56e-01 -0.00471 0.0857 0.708 B_Intermediate L2
ENSG00000111144 LTA4H 411353 sc-eQTL 3.64e-01 -0.0657 0.0722 0.708 B_Intermediate L2
ENSG00000111145 ELK3 260498 sc-eQTL 4.92e-02 -0.16 0.0808 0.708 B_Intermediate L2
ENSG00000136014 USP44 903397 sc-eQTL 8.02e-02 -0.168 0.0955 0.708 B_Intermediate L2
ENSG00000139343 SNRPF 595945 sc-eQTL 3.53e-01 -0.0755 0.0811 0.708 B_Intermediate L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 5.04e-01 -0.0636 0.0951 0.708 B_Intermediate L2
ENSG00000059758 CDK17 54393 sc-eQTL 8.78e-01 -0.0112 0.0732 0.713 B_Memory L2
ENSG00000111142 METAP2 981353 sc-eQTL 6.49e-01 0.0434 0.0952 0.713 B_Memory L2
ENSG00000111144 LTA4H 411353 sc-eQTL 2.67e-01 -0.0939 0.0843 0.713 B_Memory L2
ENSG00000111145 ELK3 260498 sc-eQTL 2.46e-01 0.0963 0.0828 0.713 B_Memory L2
ENSG00000136014 USP44 903397 sc-eQTL 3.11e-01 -0.0925 0.091 0.713 B_Memory L2
ENSG00000139343 SNRPF 595945 sc-eQTL 2.11e-01 -0.11 0.0877 0.713 B_Memory L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 8.62e-02 0.167 0.0968 0.713 B_Memory L2
ENSG00000059758 CDK17 54393 sc-eQTL 1.56e-01 -0.0859 0.0604 0.709 B_Naive1 L2
ENSG00000111142 METAP2 981353 sc-eQTL 5.06e-01 -0.0522 0.0784 0.709 B_Naive1 L2
ENSG00000111144 LTA4H 411353 sc-eQTL 4.78e-01 -0.0451 0.0634 0.709 B_Naive1 L2
ENSG00000111145 ELK3 260498 sc-eQTL 9.63e-01 0.00348 0.0751 0.709 B_Naive1 L2
ENSG00000136014 USP44 903397 sc-eQTL 5.78e-01 -0.0526 0.0943 0.709 B_Naive1 L2
ENSG00000139343 SNRPF 595945 sc-eQTL 1.57e-01 0.103 0.0727 0.709 B_Naive1 L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 2.23e-01 0.114 0.0934 0.709 B_Naive1 L2
ENSG00000059758 CDK17 54393 sc-eQTL 6.24e-01 0.0375 0.0764 0.71 B_Naive2 L2
ENSG00000111142 METAP2 981353 sc-eQTL 1.16e-01 -0.145 0.0918 0.71 B_Naive2 L2
ENSG00000111144 LTA4H 411353 sc-eQTL 9.46e-01 -0.00491 0.0725 0.71 B_Naive2 L2
ENSG00000111145 ELK3 260498 sc-eQTL 2.60e-01 -0.0963 0.0852 0.71 B_Naive2 L2
ENSG00000136014 USP44 903397 sc-eQTL 8.00e-01 -0.0234 0.0923 0.71 B_Naive2 L2
ENSG00000139343 SNRPF 595945 sc-eQTL 2.08e-01 0.107 0.0845 0.71 B_Naive2 L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 1.73e-02 -0.239 0.0995 0.71 B_Naive2 L2
ENSG00000059758 CDK17 54393 sc-eQTL 7.83e-01 -0.0192 0.0697 0.711 CD4_CTL L2
ENSG00000111142 METAP2 981353 sc-eQTL 9.82e-02 -0.165 0.0991 0.711 CD4_CTL L2
ENSG00000111144 LTA4H 411353 sc-eQTL 9.81e-02 -0.162 0.0977 0.711 CD4_CTL L2
ENSG00000111145 ELK3 260498 sc-eQTL 9.30e-01 -0.00876 0.0996 0.711 CD4_CTL L2
ENSG00000136014 USP44 903397 sc-eQTL 7.02e-01 0.0305 0.0795 0.711 CD4_CTL L2
ENSG00000139343 SNRPF 595945 sc-eQTL 5.32e-01 -0.0542 0.0865 0.711 CD4_CTL L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 2.02e-01 -0.128 0.0997 0.711 CD4_CTL L2
ENSG00000059758 CDK17 54393 sc-eQTL 4.54e-02 -0.0865 0.043 0.709 CD4_Naive L2
ENSG00000111142 METAP2 981353 sc-eQTL 6.50e-01 0.0284 0.0625 0.709 CD4_Naive L2
ENSG00000111144 LTA4H 411353 sc-eQTL 4.73e-01 -0.045 0.0626 0.709 CD4_Naive L2
ENSG00000111145 ELK3 260498 sc-eQTL 8.09e-01 -0.0151 0.0627 0.709 CD4_Naive L2
ENSG00000136014 USP44 903397 sc-eQTL 1.57e-01 0.124 0.0875 0.709 CD4_Naive L2
ENSG00000139343 SNRPF 595945 sc-eQTL 4.68e-01 -0.0405 0.0557 0.709 CD4_Naive L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 6.37e-01 0.0324 0.0686 0.709 CD4_Naive L2
ENSG00000059758 CDK17 54393 sc-eQTL 5.76e-02 -0.08 0.0419 0.709 CD4_TCM L2
ENSG00000111142 METAP2 981353 sc-eQTL 8.43e-01 0.0143 0.0719 0.709 CD4_TCM L2
ENSG00000111144 LTA4H 411353 sc-eQTL 8.81e-01 -0.0107 0.0717 0.709 CD4_TCM L2
ENSG00000111145 ELK3 260498 sc-eQTL 3.70e-01 0.0632 0.0704 0.709 CD4_TCM L2
ENSG00000136014 USP44 903397 sc-eQTL 5.23e-01 0.0623 0.0974 0.709 CD4_TCM L2
ENSG00000139343 SNRPF 595945 sc-eQTL 9.10e-01 -0.00657 0.0578 0.709 CD4_TCM L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 2.80e-01 0.0853 0.0788 0.709 CD4_TCM L2
ENSG00000059758 CDK17 54393 sc-eQTL 5.14e-01 0.0339 0.0518 0.709 CD4_TEM L2
ENSG00000111142 METAP2 981353 sc-eQTL 2.24e-01 -0.105 0.0864 0.709 CD4_TEM L2
ENSG00000111144 LTA4H 411353 sc-eQTL 5.03e-01 0.0537 0.08 0.709 CD4_TEM L2
ENSG00000111145 ELK3 260498 sc-eQTL 4.77e-01 0.0529 0.0744 0.709 CD4_TEM L2
ENSG00000136014 USP44 903397 sc-eQTL 4.04e-01 0.0764 0.0914 0.709 CD4_TEM L2
ENSG00000139343 SNRPF 595945 sc-eQTL 5.96e-02 -0.146 0.0773 0.709 CD4_TEM L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 4.94e-01 0.0632 0.0923 0.709 CD4_TEM L2
ENSG00000059758 CDK17 54393 sc-eQTL 5.80e-01 0.0279 0.0503 0.709 CD8_CTL L2
ENSG00000111142 METAP2 981353 sc-eQTL 1.68e-01 0.12 0.0866 0.709 CD8_CTL L2
ENSG00000111144 LTA4H 411353 sc-eQTL 2.50e-01 0.104 0.0906 0.709 CD8_CTL L2
ENSG00000111145 ELK3 260498 sc-eQTL 6.22e-02 0.154 0.0821 0.709 CD8_CTL L2
ENSG00000136014 USP44 903397 sc-eQTL 7.50e-01 0.0294 0.0922 0.709 CD8_CTL L2
ENSG00000139343 SNRPF 595945 sc-eQTL 6.23e-01 0.0375 0.076 0.709 CD8_CTL L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 7.23e-01 -0.0303 0.0853 0.709 CD8_CTL L2
ENSG00000059758 CDK17 54393 sc-eQTL 3.96e-02 -0.125 0.0605 0.709 CD8_Naive L2
ENSG00000111142 METAP2 981353 sc-eQTL 7.33e-01 0.0277 0.0812 0.709 CD8_Naive L2
ENSG00000111144 LTA4H 411353 sc-eQTL 9.71e-01 0.00269 0.0732 0.709 CD8_Naive L2
ENSG00000111145 ELK3 260498 sc-eQTL 6.30e-01 -0.0373 0.0774 0.709 CD8_Naive L2
ENSG00000136014 USP44 903397 sc-eQTL 8.02e-01 0.0204 0.0814 0.709 CD8_Naive L2
ENSG00000139343 SNRPF 595945 sc-eQTL 8.75e-01 -0.011 0.0697 0.709 CD8_Naive L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 1.61e-01 0.116 0.0825 0.709 CD8_Naive L2
ENSG00000059758 CDK17 54393 sc-eQTL 8.64e-01 0.0112 0.0652 0.701 CD8_TCM L2
ENSG00000111142 METAP2 981353 sc-eQTL 2.67e-01 0.108 0.097 0.701 CD8_TCM L2
ENSG00000111144 LTA4H 411353 sc-eQTL 8.93e-02 -0.162 0.0951 0.701 CD8_TCM L2
ENSG00000111145 ELK3 260498 sc-eQTL 4.65e-01 0.0593 0.081 0.701 CD8_TCM L2
ENSG00000136014 USP44 903397 sc-eQTL 8.92e-01 0.012 0.0879 0.701 CD8_TCM L2
ENSG00000139343 SNRPF 595945 sc-eQTL 2.76e-01 0.102 0.0932 0.701 CD8_TCM L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 6.29e-01 -0.0443 0.0915 0.701 CD8_TCM L2
ENSG00000059758 CDK17 54393 sc-eQTL 1.36e-01 -0.122 0.0815 0.708 CD8_TEM L2
ENSG00000111142 METAP2 981353 sc-eQTL 4.13e-01 0.0788 0.0961 0.708 CD8_TEM L2
ENSG00000111144 LTA4H 411353 sc-eQTL 9.56e-01 0.00557 0.1 0.708 CD8_TEM L2
ENSG00000111145 ELK3 260498 sc-eQTL 5.07e-01 0.0655 0.0986 0.708 CD8_TEM L2
ENSG00000136014 USP44 903397 sc-eQTL 4.99e-01 -0.0568 0.0839 0.708 CD8_TEM L2
ENSG00000139343 SNRPF 595945 sc-eQTL 8.32e-01 0.0195 0.0917 0.708 CD8_TEM L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 9.53e-01 0.00588 0.0996 0.708 CD8_TEM L2
ENSG00000059758 CDK17 54393 sc-eQTL 7.99e-01 -0.0141 0.055 0.708 MAIT L2
ENSG00000074527 NTN4 663721 sc-eQTL 3.80e-01 -0.0651 0.074 0.708 MAIT L2
ENSG00000111142 METAP2 981353 sc-eQTL 1.37e-01 0.139 0.0929 0.708 MAIT L2
ENSG00000111144 LTA4H 411353 sc-eQTL 3.99e-01 -0.0717 0.0849 0.708 MAIT L2
ENSG00000111145 ELK3 260498 sc-eQTL 4.51e-01 -0.0537 0.0712 0.708 MAIT L2
ENSG00000139343 SNRPF 595945 sc-eQTL 1.38e-01 -0.122 0.0822 0.708 MAIT L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 4.19e-01 0.0751 0.0927 0.708 MAIT L2
ENSG00000188596 CFAP54 -34698 sc-eQTL 1.68e-01 -0.127 0.0916 0.708 MAIT L2
ENSG00000059758 CDK17 54393 sc-eQTL 1.38e-01 0.0878 0.0589 0.707 NK_CD56bright L2
ENSG00000111142 METAP2 981353 sc-eQTL 8.77e-01 0.0155 0.1 0.707 NK_CD56bright L2
ENSG00000111144 LTA4H 411353 sc-eQTL 9.45e-01 -0.00609 0.0876 0.707 NK_CD56bright L2
ENSG00000111145 ELK3 260498 sc-eQTL 3.72e-01 -0.083 0.0928 0.707 NK_CD56bright L2
ENSG00000139343 SNRPF 595945 sc-eQTL 9.22e-01 -0.00953 0.0973 0.707 NK_CD56bright L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 7.09e-01 0.0367 0.0981 0.707 NK_CD56bright L2
ENSG00000059758 CDK17 54393 sc-eQTL 5.67e-01 0.0283 0.0493 0.711 NK_CD56dim L2
ENSG00000111142 METAP2 981353 sc-eQTL 6.59e-01 0.0382 0.0865 0.711 NK_CD56dim L2
ENSG00000111144 LTA4H 411353 sc-eQTL 7.46e-01 0.0289 0.0892 0.711 NK_CD56dim L2
ENSG00000111145 ELK3 260498 sc-eQTL 9.04e-01 -0.00955 0.079 0.711 NK_CD56dim L2
ENSG00000139343 SNRPF 595945 sc-eQTL 1.84e-01 -0.0998 0.0749 0.711 NK_CD56dim L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 3.00e-01 -0.0897 0.0864 0.711 NK_CD56dim L2
ENSG00000059758 CDK17 54393 sc-eQTL 9.95e-01 -0.000491 0.0788 0.715 NK_HLA L2
ENSG00000111142 METAP2 981353 sc-eQTL 2.61e-01 -0.112 0.099 0.715 NK_HLA L2
ENSG00000111144 LTA4H 411353 sc-eQTL 5.01e-01 -0.0696 0.103 0.715 NK_HLA L2
ENSG00000111145 ELK3 260498 sc-eQTL 6.04e-01 -0.0498 0.0958 0.715 NK_HLA L2
ENSG00000139343 SNRPF 595945 sc-eQTL 6.08e-01 0.0513 0.0998 0.715 NK_HLA L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 6.94e-01 -0.0372 0.0945 0.715 NK_HLA L2
ENSG00000059758 CDK17 54393 sc-eQTL 3.92e-01 0.0463 0.054 0.711 NK_cytokine L2
ENSG00000111142 METAP2 981353 sc-eQTL 9.08e-01 0.0104 0.0898 0.711 NK_cytokine L2
ENSG00000111144 LTA4H 411353 sc-eQTL 7.34e-01 0.0311 0.0914 0.711 NK_cytokine L2
ENSG00000111145 ELK3 260498 sc-eQTL 7.45e-01 0.0286 0.0875 0.711 NK_cytokine L2
ENSG00000139343 SNRPF 595945 sc-eQTL 5.09e-01 -0.049 0.0741 0.711 NK_cytokine L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 3.06e-01 0.0938 0.0914 0.711 NK_cytokine L2
ENSG00000059758 CDK17 54393 sc-eQTL 8.81e-01 -0.0161 0.107 0.719 PB L2
ENSG00000111142 METAP2 981353 sc-eQTL 3.49e-01 -0.118 0.125 0.719 PB L2
ENSG00000111144 LTA4H 411353 sc-eQTL 3.45e-01 -0.0895 0.0943 0.719 PB L2
ENSG00000111145 ELK3 260498 sc-eQTL 4.95e-01 -0.0829 0.121 0.719 PB L2
ENSG00000136014 USP44 903397 sc-eQTL 1.25e-01 0.172 0.111 0.719 PB L2
ENSG00000139343 SNRPF 595945 sc-eQTL 5.04e-01 -0.0792 0.118 0.719 PB L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 9.93e-01 -0.00124 0.141 0.719 PB L2
ENSG00000059758 CDK17 54393 sc-eQTL 9.33e-01 0.00505 0.0597 0.707 Pro_T L2
ENSG00000074527 NTN4 663721 sc-eQTL 6.16e-02 -0.125 0.0665 0.707 Pro_T L2
ENSG00000111142 METAP2 981353 sc-eQTL 6.30e-01 0.0382 0.0791 0.707 Pro_T L2
ENSG00000111144 LTA4H 411353 sc-eQTL 9.18e-01 0.00811 0.0788 0.707 Pro_T L2
ENSG00000111145 ELK3 260498 sc-eQTL 8.59e-01 -0.017 0.0953 0.707 Pro_T L2
ENSG00000139343 SNRPF 595945 sc-eQTL 7.81e-01 0.0167 0.0601 0.707 Pro_T L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 3.66e-01 0.0789 0.0872 0.707 Pro_T L2
ENSG00000188596 CFAP54 -34698 sc-eQTL 6.40e-01 0.033 0.0706 0.707 Pro_T L2
ENSG00000059758 CDK17 54393 sc-eQTL 6.58e-01 -0.0289 0.0652 0.709 Treg L2
ENSG00000111142 METAP2 981353 sc-eQTL 2.57e-01 0.101 0.0885 0.709 Treg L2
ENSG00000111144 LTA4H 411353 sc-eQTL 7.44e-01 0.027 0.0826 0.709 Treg L2
ENSG00000111145 ELK3 260498 sc-eQTL 9.51e-02 -0.125 0.0744 0.709 Treg L2
ENSG00000136014 USP44 903397 sc-eQTL 3.40e-01 0.0803 0.0839 0.709 Treg L2
ENSG00000139343 SNRPF 595945 sc-eQTL 2.30e-01 0.104 0.0864 0.709 Treg L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 9.24e-02 0.162 0.0961 0.709 Treg L2
ENSG00000059758 CDK17 54393 sc-eQTL 9.02e-01 -0.00998 0.0813 0.707 cDC L2
ENSG00000084110 HAL 458508 sc-eQTL 6.82e-01 -0.0346 0.0845 0.707 cDC L2
ENSG00000111142 METAP2 981353 sc-eQTL 7.25e-01 -0.036 0.102 0.707 cDC L2
ENSG00000111144 LTA4H 411353 sc-eQTL 4.19e-01 0.0585 0.0723 0.707 cDC L2
ENSG00000111145 ELK3 260498 sc-eQTL 1.49e-01 -0.138 0.095 0.707 cDC L2
ENSG00000139343 SNRPF 595945 sc-eQTL 4.26e-01 0.0637 0.0799 0.707 cDC L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 7.34e-01 0.0332 0.0975 0.707 cDC L2
ENSG00000257715 AC007298.1 429550 sc-eQTL 5.80e-01 -0.0456 0.0821 0.707 cDC L2
ENSG00000059758 CDK17 54393 sc-eQTL 5.15e-01 -0.0455 0.0697 0.709 cMono_IL1B L2
ENSG00000084110 HAL 458508 sc-eQTL 2.23e-01 -0.0927 0.0758 0.709 cMono_IL1B L2
ENSG00000111142 METAP2 981353 sc-eQTL 2.08e-01 -0.0994 0.0786 0.709 cMono_IL1B L2
ENSG00000111144 LTA4H 411353 sc-eQTL 9.03e-01 -0.00998 0.0822 0.709 cMono_IL1B L2
ENSG00000111145 ELK3 260498 sc-eQTL 2.67e-01 -0.0703 0.0631 0.709 cMono_IL1B L2
ENSG00000139343 SNRPF 595945 sc-eQTL 5.12e-01 -0.0428 0.0653 0.709 cMono_IL1B L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 6.69e-02 -0.164 0.0893 0.709 cMono_IL1B L2
ENSG00000257715 AC007298.1 429550 sc-eQTL 4.06e-01 -0.0698 0.0838 0.709 cMono_IL1B L2
ENSG00000059758 CDK17 54393 sc-eQTL 6.44e-01 -0.0367 0.0793 0.709 cMono_S100A L2
ENSG00000084110 HAL 458508 sc-eQTL 9.28e-01 -0.00803 0.089 0.709 cMono_S100A L2
ENSG00000111142 METAP2 981353 sc-eQTL 7.68e-02 -0.159 0.0894 0.709 cMono_S100A L2
ENSG00000111144 LTA4H 411353 sc-eQTL 7.12e-01 -0.0329 0.0889 0.709 cMono_S100A L2
ENSG00000111145 ELK3 260498 sc-eQTL 5.95e-01 0.0386 0.0724 0.709 cMono_S100A L2
ENSG00000139343 SNRPF 595945 sc-eQTL 6.42e-01 0.0333 0.0715 0.709 cMono_S100A L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 5.14e-01 -0.0631 0.0965 0.709 cMono_S100A L2
ENSG00000257715 AC007298.1 429550 sc-eQTL 5.63e-01 -0.0526 0.0909 0.709 cMono_S100A L2
ENSG00000059758 CDK17 54393 sc-eQTL 4.35e-01 0.0607 0.0776 0.7 gdT L2
ENSG00000074527 NTN4 663721 sc-eQTL 9.07e-01 0.0105 0.0892 0.7 gdT L2
ENSG00000111142 METAP2 981353 sc-eQTL 1.66e-01 -0.154 0.111 0.7 gdT L2
ENSG00000111144 LTA4H 411353 sc-eQTL 7.46e-01 0.0378 0.116 0.7 gdT L2
ENSG00000111145 ELK3 260498 sc-eQTL 8.61e-01 0.0189 0.108 0.7 gdT L2
ENSG00000139343 SNRPF 595945 sc-eQTL 4.89e-01 -0.072 0.104 0.7 gdT L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 5.36e-01 -0.0711 0.115 0.7 gdT L2
ENSG00000188596 CFAP54 -34698 sc-eQTL 4.68e-01 0.073 0.1 0.7 gdT L2
ENSG00000059758 CDK17 54393 sc-eQTL 2.59e-01 -0.0991 0.0876 0.702 intMono L2
ENSG00000084110 HAL 458508 sc-eQTL 7.78e-01 -0.025 0.0888 0.702 intMono L2
ENSG00000111142 METAP2 981353 sc-eQTL 7.96e-01 -0.026 0.101 0.702 intMono L2
ENSG00000111144 LTA4H 411353 sc-eQTL 7.26e-01 -0.032 0.0911 0.702 intMono L2
ENSG00000111145 ELK3 260498 sc-eQTL 1.37e-01 0.121 0.0807 0.702 intMono L2
ENSG00000139343 SNRPF 595945 sc-eQTL 6.37e-02 -0.16 0.086 0.702 intMono L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 8.00e-01 -0.0229 0.0901 0.702 intMono L2
ENSG00000257715 AC007298.1 429550 sc-eQTL 6.54e-01 0.0407 0.0906 0.702 intMono L2
ENSG00000059758 CDK17 54393 sc-eQTL 5.44e-01 0.0426 0.0701 0.701 ncMono L2
ENSG00000084110 HAL 458508 sc-eQTL 1.29e-01 -0.119 0.0778 0.701 ncMono L2
ENSG00000111142 METAP2 981353 sc-eQTL 2.91e-01 -0.0999 0.0944 0.701 ncMono L2
ENSG00000111144 LTA4H 411353 sc-eQTL 3.86e-01 -0.0757 0.0871 0.701 ncMono L2
ENSG00000111145 ELK3 260498 sc-eQTL 4.66e-01 0.0546 0.0748 0.701 ncMono L2
ENSG00000139343 SNRPF 595945 sc-eQTL 7.79e-01 -0.0215 0.0765 0.701 ncMono L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 7.26e-01 0.0285 0.0813 0.701 ncMono L2
ENSG00000257715 AC007298.1 429550 sc-eQTL 2.36e-01 -0.11 0.0924 0.701 ncMono L2
ENSG00000059758 CDK17 54393 sc-eQTL 7.66e-02 -0.165 0.0925 0.715 pDC L2
ENSG00000084110 HAL 458508 sc-eQTL 4.78e-01 -0.056 0.0787 0.715 pDC L2
ENSG00000111142 METAP2 981353 sc-eQTL 8.07e-01 0.0261 0.106 0.715 pDC L2
ENSG00000111144 LTA4H 411353 sc-eQTL 1.50e-01 0.127 0.0877 0.715 pDC L2
ENSG00000111145 ELK3 260498 sc-eQTL 6.43e-01 -0.0501 0.108 0.715 pDC L2
ENSG00000139343 SNRPF 595945 sc-eQTL 5.12e-01 -0.0618 0.0941 0.715 pDC L2
ENSG00000139350 NEDD1 -452350 sc-eQTL 5.54e-01 -0.0616 0.104 0.715 pDC L2
ENSG00000257715 AC007298.1 429550 sc-eQTL 6.45e-01 0.0412 0.0891 0.715 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 54393 sc-eQTL 4.51e-01 -0.0471 0.0624 0.709 B_Memory LOneK1K
ENSG00000111142 METAP2 981353 sc-eQTL 9.55e-01 -0.00487 0.087 0.709 B_Memory LOneK1K
ENSG00000111144 LTA4H 411353 sc-eQTL 4.42e-01 -0.05 0.0649 0.709 B_Memory LOneK1K
ENSG00000111145 ELK3 260498 sc-eQTL 8.34e-01 -0.0156 0.0742 0.709 B_Memory LOneK1K
ENSG00000136014 USP44 903397 sc-eQTL 4.43e-02 -0.185 0.0916 0.709 B_Memory LOneK1K
ENSG00000139343 SNRPF 595945 sc-eQTL 1.54e-01 -0.102 0.0716 0.709 B_Memory LOneK1K
ENSG00000139350 NEDD1 -452350 sc-eQTL 3.64e-01 0.0857 0.0942 0.709 B_Memory LOneK1K
ENSG00000059758 CDK17 54393 sc-eQTL 3.31e-01 -0.0529 0.0542 0.709 B_Naive LOneK1K
ENSG00000111142 METAP2 981353 sc-eQTL 3.08e-01 -0.075 0.0734 0.709 B_Naive LOneK1K
ENSG00000111144 LTA4H 411353 sc-eQTL 8.21e-01 -0.0138 0.061 0.709 B_Naive LOneK1K
ENSG00000111145 ELK3 260498 sc-eQTL 2.73e-01 -0.0761 0.0693 0.709 B_Naive LOneK1K
ENSG00000136014 USP44 903397 sc-eQTL 4.07e-01 -0.0705 0.0848 0.709 B_Naive LOneK1K
ENSG00000139343 SNRPF 595945 sc-eQTL 1.77e-01 0.0944 0.0696 0.709 B_Naive LOneK1K
ENSG00000139350 NEDD1 -452350 sc-eQTL 4.56e-01 -0.069 0.0924 0.709 B_Naive LOneK1K
ENSG00000059758 CDK17 54393 sc-eQTL 4.69e-01 -0.0456 0.0628 0.709 CD14_Mono LOneK1K
ENSG00000084110 HAL 458508 sc-eQTL 2.74e-01 -0.0833 0.076 0.709 CD14_Mono LOneK1K
ENSG00000111142 METAP2 981353 sc-eQTL 6.67e-02 -0.131 0.0712 0.709 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 411353 sc-eQTL 9.06e-01 -0.00988 0.0837 0.709 CD14_Mono LOneK1K
ENSG00000111145 ELK3 260498 sc-eQTL 8.70e-01 -0.00991 0.0604 0.709 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 595945 sc-eQTL 8.98e-01 -0.00751 0.0583 0.709 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -452350 sc-eQTL 1.06e-01 -0.148 0.0909 0.709 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 429550 sc-eQTL 5.73e-01 -0.0477 0.0847 0.709 CD14_Mono LOneK1K
ENSG00000059758 CDK17 54393 sc-eQTL 6.57e-01 -0.0288 0.0646 0.707 CD16_Mono LOneK1K
ENSG00000084110 HAL 458508 sc-eQTL 2.14e-01 -0.0948 0.0761 0.707 CD16_Mono LOneK1K
ENSG00000111142 METAP2 981353 sc-eQTL 3.33e-01 -0.0838 0.0864 0.707 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 411353 sc-eQTL 4.78e-01 -0.0602 0.0846 0.707 CD16_Mono LOneK1K
ENSG00000111145 ELK3 260498 sc-eQTL 5.55e-01 0.037 0.0626 0.707 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 595945 sc-eQTL 1.50e-01 -0.093 0.0643 0.707 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -452350 sc-eQTL 9.60e-01 -0.00413 0.0828 0.707 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 429550 sc-eQTL 5.49e-01 -0.0526 0.0876 0.707 CD16_Mono LOneK1K
ENSG00000059758 CDK17 54393 sc-eQTL 7.83e-01 0.0128 0.0463 0.711 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 981353 sc-eQTL 8.48e-01 -0.0135 0.0705 0.711 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 411353 sc-eQTL 9.24e-01 -0.00774 0.0805 0.711 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 260498 sc-eQTL 7.98e-01 -0.0189 0.0737 0.711 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 595945 sc-eQTL 1.72e-01 -0.0861 0.0628 0.711 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -452350 sc-eQTL 6.46e-01 -0.0361 0.0786 0.711 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000139350 NEDD1 -452350 eQTL 5.51e-09 -0.153 0.0261 0.0 0.0 0.292
ENSG00000188596 CFAP54 -34702 eQTL 1.71e-06 -0.105 0.0219 0.00119 0.00107 0.292
ENSG00000257715 AC007298.1 429550 eQTL 0.0145 0.0518 0.0211 0.0 0.0 0.292

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111144 \N 411353 1.05e-06 6.56e-07 1.07e-07 4.04e-07 9.45e-08 2.63e-07 6.19e-07 1.31e-07 4.43e-07 2.37e-07 8.28e-07 3.73e-07 9.65e-07 1.59e-07 2.18e-07 2.14e-07 4.87e-07 4.11e-07 2.25e-07 1.53e-07 2.01e-07 4.11e-07 3.87e-07 1.76e-07 9.71e-07 2.34e-07 2.56e-07 2.44e-07 4.22e-07 7.71e-07 3.43e-07 6.13e-08 5.19e-08 1.49e-07 3.01e-07 6.73e-08 1.18e-07 7.98e-08 6.72e-08 5.32e-08 8.09e-08 7.36e-07 2.47e-08 1.9e-08 1.1e-07 1.81e-08 1.1e-07 3.14e-09 5.52e-08
ENSG00000139350 NEDD1 -452350 8.63e-07 5.33e-07 8.9e-08 3.43e-07 1.1e-07 2.01e-07 5.54e-07 9.26e-08 3.32e-07 2.06e-07 5.93e-07 3.21e-07 7.36e-07 1.23e-07 1.51e-07 1.61e-07 3.13e-07 3.56e-07 1.69e-07 1.08e-07 1.8e-07 3.15e-07 3.11e-07 1.25e-07 7.01e-07 2.29e-07 2.08e-07 1.86e-07 3.27e-07 6.03e-07 2.55e-07 7.4e-08 5.55e-08 1.19e-07 2.61e-07 5.23e-08 8.87e-08 6.46e-08 4.11e-08 7.39e-08 4.36e-08 5.52e-07 1.67e-08 1.74e-08 8.59e-08 9.12e-09 9.73e-08 2.75e-09 4.59e-08
ENSG00000188596 CFAP54 -34702 1.05e-05 1.04e-05 1.35e-06 5.5e-06 2.21e-06 4.6e-06 1.09e-05 1.3e-06 8.69e-06 4.89e-06 1.19e-05 4.92e-06 1.59e-05 3.78e-06 2.34e-06 6.06e-06 4.62e-06 7.14e-06 2.7e-06 2.63e-06 4.7e-06 9.17e-06 7.98e-06 3.24e-06 1.48e-05 3.11e-06 4.46e-06 2.99e-06 1.02e-05 1.1e-05 5.06e-06 5.77e-07 9.77e-07 2.85e-06 3.69e-06 2.05e-06 1.55e-06 1.35e-06 1.98e-06 1.01e-06 8.81e-07 1.3e-05 1.34e-06 1.62e-07 6.99e-07 1.02e-06 9.95e-07 6.92e-07 6.2e-07
ENSG00000257715 AC007298.1 429550 9.39e-07 6.07e-07 1.08e-07 3.87e-07 1.06e-07 2.24e-07 5.9e-07 1.03e-07 4.19e-07 2.26e-07 7.32e-07 3.5e-07 8.6e-07 1.48e-07 1.78e-07 1.96e-07 3.75e-07 3.82e-07 1.93e-07 1.3e-07 1.91e-07 3.87e-07 3.7e-07 1.36e-07 8.33e-07 2.46e-07 2.52e-07 2.13e-07 3.86e-07 6.98e-07 2.93e-07 7.41e-08 5.68e-08 1.36e-07 3e-07 5.7e-08 1.03e-07 7.51e-08 5.67e-08 5.96e-08 5.43e-08 6.27e-07 2.75e-08 1.83e-08 9.79e-08 1.32e-08 7.89e-08 2.94e-09 5.16e-08