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Genes within 1Mb (chr12:96451970:G:GA):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 51490 sc-eQTL 7.90e-01 0.0123 0.0461 0.635 B L1
ENSG00000111142 METAP2 978450 sc-eQTL 5.12e-01 -0.0428 0.0651 0.635 B L1
ENSG00000111144 LTA4H 408450 sc-eQTL 5.72e-01 0.0323 0.0572 0.635 B L1
ENSG00000111145 ELK3 257595 sc-eQTL 9.44e-01 0.00428 0.0609 0.635 B L1
ENSG00000136014 USP44 900494 sc-eQTL 7.96e-03 -0.198 0.0739 0.635 B L1
ENSG00000139343 SNRPF 593042 sc-eQTL 2.95e-01 0.058 0.0552 0.635 B L1
ENSG00000139350 NEDD1 -455253 sc-eQTL 1.08e-01 -0.13 0.0803 0.635 B L1
ENSG00000059758 CDK17 51490 sc-eQTL 2.57e-01 -0.0426 0.0375 0.635 CD4T L1
ENSG00000111142 METAP2 978450 sc-eQTL 3.81e-01 0.0459 0.0523 0.635 CD4T L1
ENSG00000111144 LTA4H 408450 sc-eQTL 7.74e-01 -0.0148 0.0516 0.635 CD4T L1
ENSG00000111145 ELK3 257595 sc-eQTL 5.26e-01 -0.0355 0.0558 0.635 CD4T L1
ENSG00000136014 USP44 900494 sc-eQTL 1.33e-01 0.12 0.0793 0.635 CD4T L1
ENSG00000139343 SNRPF 593042 sc-eQTL 6.00e-01 -0.0256 0.0488 0.635 CD4T L1
ENSG00000139350 NEDD1 -455253 sc-eQTL 8.93e-01 0.0081 0.0602 0.635 CD4T L1
ENSG00000059758 CDK17 51490 sc-eQTL 3.22e-01 -0.0384 0.0387 0.635 CD8T L1
ENSG00000111142 METAP2 978450 sc-eQTL 9.78e-02 0.104 0.0623 0.635 CD8T L1
ENSG00000111144 LTA4H 408450 sc-eQTL 5.87e-01 -0.0227 0.0417 0.635 CD8T L1
ENSG00000111145 ELK3 257595 sc-eQTL 8.45e-01 -0.0123 0.0627 0.635 CD8T L1
ENSG00000136014 USP44 900494 sc-eQTL 4.15e-01 0.0582 0.0712 0.635 CD8T L1
ENSG00000139343 SNRPF 593042 sc-eQTL 3.54e-01 0.0477 0.0513 0.635 CD8T L1
ENSG00000139350 NEDD1 -455253 sc-eQTL 6.35e-01 -0.0325 0.0683 0.635 CD8T L1
ENSG00000059758 CDK17 51490 sc-eQTL 7.65e-01 -0.0217 0.0725 0.628 DC L1
ENSG00000084110 HAL 455605 sc-eQTL 1.04e-01 -0.134 0.082 0.628 DC L1
ENSG00000111142 METAP2 978450 sc-eQTL 4.33e-01 0.0714 0.0909 0.628 DC L1
ENSG00000111144 LTA4H 408450 sc-eQTL 3.24e-01 0.0666 0.0674 0.628 DC L1
ENSG00000111145 ELK3 257595 sc-eQTL 1.78e-01 -0.111 0.0823 0.628 DC L1
ENSG00000139343 SNRPF 593042 sc-eQTL 6.19e-01 0.0342 0.0687 0.628 DC L1
ENSG00000139350 NEDD1 -455253 sc-eQTL 6.33e-01 -0.0423 0.0882 0.628 DC L1
ENSG00000257715 AC007298.1 426647 sc-eQTL 7.64e-01 -0.024 0.0797 0.628 DC L1
ENSG00000059758 CDK17 51490 sc-eQTL 9.87e-01 -0.000908 0.0577 0.635 Mono L1
ENSG00000084110 HAL 455605 sc-eQTL 5.20e-01 -0.0469 0.0727 0.635 Mono L1
ENSG00000111142 METAP2 978450 sc-eQTL 2.69e-01 -0.0695 0.0627 0.635 Mono L1
ENSG00000111144 LTA4H 408450 sc-eQTL 9.24e-01 0.00781 0.0821 0.635 Mono L1
ENSG00000111145 ELK3 257595 sc-eQTL 7.57e-01 -0.0171 0.0552 0.635 Mono L1
ENSG00000139343 SNRPF 593042 sc-eQTL 4.82e-01 -0.0366 0.052 0.635 Mono L1
ENSG00000139350 NEDD1 -455253 sc-eQTL 7.52e-01 -0.0253 0.0798 0.635 Mono L1
ENSG00000257715 AC007298.1 426647 sc-eQTL 9.05e-01 -0.00923 0.0774 0.635 Mono L1
ENSG00000059758 CDK17 51490 sc-eQTL 4.21e-02 0.0888 0.0434 0.635 NK L1
ENSG00000111142 METAP2 978450 sc-eQTL 9.60e-01 -0.00325 0.0649 0.635 NK L1
ENSG00000111144 LTA4H 408450 sc-eQTL 4.89e-01 -0.0515 0.0743 0.635 NK L1
ENSG00000111145 ELK3 257595 sc-eQTL 9.79e-01 -0.0019 0.0706 0.635 NK L1
ENSG00000139343 SNRPF 593042 sc-eQTL 7.82e-01 -0.0162 0.0585 0.635 NK L1
ENSG00000139350 NEDD1 -455253 sc-eQTL 9.63e-01 -0.0034 0.0741 0.635 NK L1
ENSG00000059758 CDK17 51490 sc-eQTL 5.11e-02 0.0716 0.0365 0.635 Other_T L1
ENSG00000074527 NTN4 660818 sc-eQTL 2.78e-01 -0.0739 0.0679 0.635 Other_T L1
ENSG00000111142 METAP2 978450 sc-eQTL 7.72e-01 0.0204 0.0703 0.635 Other_T L1
ENSG00000111144 LTA4H 408450 sc-eQTL 4.60e-01 -0.0569 0.0769 0.635 Other_T L1
ENSG00000111145 ELK3 257595 sc-eQTL 4.97e-01 -0.0408 0.06 0.635 Other_T L1
ENSG00000139343 SNRPF 593042 sc-eQTL 9.22e-01 0.00548 0.0558 0.635 Other_T L1
ENSG00000139350 NEDD1 -455253 sc-eQTL 3.74e-01 -0.0757 0.0849 0.635 Other_T L1
ENSG00000188596 CFAP54 -37601 sc-eQTL 9.60e-01 0.00439 0.088 0.635 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 51490 sc-eQTL 7.64e-01 0.0255 0.0849 0.635 B_Activated L2
ENSG00000111142 METAP2 978450 sc-eQTL 1.10e-01 0.17 0.106 0.635 B_Activated L2
ENSG00000111144 LTA4H 408450 sc-eQTL 1.79e-01 0.129 0.0956 0.635 B_Activated L2
ENSG00000111145 ELK3 257595 sc-eQTL 3.14e-01 0.102 0.102 0.635 B_Activated L2
ENSG00000136014 USP44 900494 sc-eQTL 8.74e-02 0.133 0.0775 0.635 B_Activated L2
ENSG00000139343 SNRPF 593042 sc-eQTL 2.10e-01 0.12 0.0955 0.635 B_Activated L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 2.82e-01 -0.108 0.1 0.635 B_Activated L2
ENSG00000059758 CDK17 51490 sc-eQTL 3.31e-01 0.0697 0.0715 0.633 B_Intermediate L2
ENSG00000111142 METAP2 978450 sc-eQTL 5.08e-01 0.0545 0.0821 0.633 B_Intermediate L2
ENSG00000111144 LTA4H 408450 sc-eQTL 9.08e-01 0.00807 0.0694 0.633 B_Intermediate L2
ENSG00000111145 ELK3 257595 sc-eQTL 6.76e-02 -0.143 0.0777 0.633 B_Intermediate L2
ENSG00000136014 USP44 900494 sc-eQTL 1.28e-02 -0.228 0.091 0.633 B_Intermediate L2
ENSG00000139343 SNRPF 593042 sc-eQTL 2.05e-01 -0.0987 0.0777 0.633 B_Intermediate L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 9.68e-01 0.00367 0.0914 0.633 B_Intermediate L2
ENSG00000059758 CDK17 51490 sc-eQTL 9.80e-01 0.00176 0.0707 0.638 B_Memory L2
ENSG00000111142 METAP2 978450 sc-eQTL 9.74e-01 0.00296 0.092 0.638 B_Memory L2
ENSG00000111144 LTA4H 408450 sc-eQTL 8.36e-01 -0.0169 0.0816 0.638 B_Memory L2
ENSG00000111145 ELK3 257595 sc-eQTL 3.15e-01 0.0806 0.0801 0.638 B_Memory L2
ENSG00000136014 USP44 900494 sc-eQTL 9.03e-02 -0.149 0.0875 0.638 B_Memory L2
ENSG00000139343 SNRPF 593042 sc-eQTL 2.76e-01 -0.0926 0.0848 0.638 B_Memory L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 8.56e-02 0.161 0.0935 0.638 B_Memory L2
ENSG00000059758 CDK17 51490 sc-eQTL 7.80e-01 -0.0161 0.0576 0.635 B_Naive1 L2
ENSG00000111142 METAP2 978450 sc-eQTL 8.56e-01 0.0135 0.0746 0.635 B_Naive1 L2
ENSG00000111144 LTA4H 408450 sc-eQTL 8.40e-01 -0.0122 0.0604 0.635 B_Naive1 L2
ENSG00000111145 ELK3 257595 sc-eQTL 1.98e-01 0.0918 0.0711 0.635 B_Naive1 L2
ENSG00000136014 USP44 900494 sc-eQTL 4.29e-02 -0.181 0.0888 0.635 B_Naive1 L2
ENSG00000139343 SNRPF 593042 sc-eQTL 6.72e-03 0.187 0.0682 0.635 B_Naive1 L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 7.15e-01 0.0325 0.089 0.635 B_Naive1 L2
ENSG00000059758 CDK17 51490 sc-eQTL 4.84e-01 0.0513 0.0731 0.635 B_Naive2 L2
ENSG00000111142 METAP2 978450 sc-eQTL 4.24e-01 -0.0707 0.0883 0.635 B_Naive2 L2
ENSG00000111144 LTA4H 408450 sc-eQTL 9.12e-01 -0.00765 0.0694 0.635 B_Naive2 L2
ENSG00000111145 ELK3 257595 sc-eQTL 4.73e-01 -0.0587 0.0817 0.635 B_Naive2 L2
ENSG00000136014 USP44 900494 sc-eQTL 8.03e-01 -0.0221 0.0884 0.635 B_Naive2 L2
ENSG00000139343 SNRPF 593042 sc-eQTL 1.45e-01 0.118 0.0808 0.635 B_Naive2 L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 1.99e-02 -0.224 0.0954 0.635 B_Naive2 L2
ENSG00000059758 CDK17 51490 sc-eQTL 6.42e-01 0.0312 0.067 0.641 CD4_CTL L2
ENSG00000111142 METAP2 978450 sc-eQTL 1.90e-01 -0.126 0.0955 0.641 CD4_CTL L2
ENSG00000111144 LTA4H 408450 sc-eQTL 1.44e-02 -0.23 0.0931 0.641 CD4_CTL L2
ENSG00000111145 ELK3 257595 sc-eQTL 8.32e-01 0.0203 0.0956 0.641 CD4_CTL L2
ENSG00000136014 USP44 900494 sc-eQTL 8.49e-01 0.0146 0.0763 0.641 CD4_CTL L2
ENSG00000139343 SNRPF 593042 sc-eQTL 5.14e-01 -0.0544 0.0831 0.641 CD4_CTL L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 4.87e-01 -0.0668 0.096 0.641 CD4_CTL L2
ENSG00000059758 CDK17 51490 sc-eQTL 2.14e-01 -0.0511 0.0411 0.635 CD4_Naive L2
ENSG00000111142 METAP2 978450 sc-eQTL 3.59e-01 0.0545 0.0593 0.635 CD4_Naive L2
ENSG00000111144 LTA4H 408450 sc-eQTL 3.71e-01 -0.0534 0.0595 0.635 CD4_Naive L2
ENSG00000111145 ELK3 257595 sc-eQTL 3.46e-01 -0.0562 0.0595 0.635 CD4_Naive L2
ENSG00000136014 USP44 900494 sc-eQTL 6.45e-02 0.154 0.0829 0.635 CD4_Naive L2
ENSG00000139343 SNRPF 593042 sc-eQTL 7.98e-01 -0.0136 0.053 0.635 CD4_Naive L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 4.88e-01 -0.0453 0.0652 0.635 CD4_Naive L2
ENSG00000059758 CDK17 51490 sc-eQTL 4.79e-01 -0.0286 0.0404 0.635 CD4_TCM L2
ENSG00000111142 METAP2 978450 sc-eQTL 3.15e-01 0.0691 0.0687 0.635 CD4_TCM L2
ENSG00000111144 LTA4H 408450 sc-eQTL 5.84e-01 -0.0376 0.0685 0.635 CD4_TCM L2
ENSG00000111145 ELK3 257595 sc-eQTL 8.14e-01 -0.0159 0.0675 0.635 CD4_TCM L2
ENSG00000136014 USP44 900494 sc-eQTL 6.29e-01 0.0451 0.0932 0.635 CD4_TCM L2
ENSG00000139343 SNRPF 593042 sc-eQTL 5.81e-01 -0.0306 0.0553 0.635 CD4_TCM L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 3.98e-01 0.0639 0.0755 0.635 CD4_TCM L2
ENSG00000059758 CDK17 51490 sc-eQTL 1.44e-01 0.0724 0.0494 0.635 CD4_TEM L2
ENSG00000111142 METAP2 978450 sc-eQTL 4.47e-01 -0.0631 0.0829 0.635 CD4_TEM L2
ENSG00000111144 LTA4H 408450 sc-eQTL 4.79e-01 0.0543 0.0766 0.635 CD4_TEM L2
ENSG00000111145 ELK3 257595 sc-eQTL 6.75e-01 0.0299 0.0712 0.635 CD4_TEM L2
ENSG00000136014 USP44 900494 sc-eQTL 4.01e-01 0.0736 0.0875 0.635 CD4_TEM L2
ENSG00000139343 SNRPF 593042 sc-eQTL 2.51e-01 -0.0857 0.0744 0.635 CD4_TEM L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 6.13e-01 0.0448 0.0884 0.635 CD4_TEM L2
ENSG00000059758 CDK17 51490 sc-eQTL 8.46e-02 0.0835 0.0482 0.635 CD8_CTL L2
ENSG00000111142 METAP2 978450 sc-eQTL 1.10e-01 0.134 0.0834 0.635 CD8_CTL L2
ENSG00000111144 LTA4H 408450 sc-eQTL 3.55e-01 0.081 0.0874 0.635 CD8_CTL L2
ENSG00000111145 ELK3 257595 sc-eQTL 3.32e-01 0.0774 0.0796 0.635 CD8_CTL L2
ENSG00000136014 USP44 900494 sc-eQTL 6.78e-01 0.0369 0.0889 0.635 CD8_CTL L2
ENSG00000139343 SNRPF 593042 sc-eQTL 8.07e-01 0.0179 0.0733 0.635 CD8_CTL L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 2.25e-01 -0.0996 0.082 0.635 CD8_CTL L2
ENSG00000059758 CDK17 51490 sc-eQTL 3.10e-01 -0.0594 0.0583 0.635 CD8_Naive L2
ENSG00000111142 METAP2 978450 sc-eQTL 5.58e-01 0.0455 0.0776 0.635 CD8_Naive L2
ENSG00000111144 LTA4H 408450 sc-eQTL 5.31e-01 -0.0439 0.07 0.635 CD8_Naive L2
ENSG00000111145 ELK3 257595 sc-eQTL 4.34e-01 -0.058 0.074 0.635 CD8_Naive L2
ENSG00000136014 USP44 900494 sc-eQTL 6.64e-01 0.0338 0.0778 0.635 CD8_Naive L2
ENSG00000139343 SNRPF 593042 sc-eQTL 4.05e-01 0.0555 0.0665 0.635 CD8_Naive L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 5.71e-01 0.0449 0.0792 0.635 CD8_Naive L2
ENSG00000059758 CDK17 51490 sc-eQTL 6.03e-01 0.033 0.0633 0.625 CD8_TCM L2
ENSG00000111142 METAP2 978450 sc-eQTL 9.28e-01 -0.0085 0.0945 0.625 CD8_TCM L2
ENSG00000111144 LTA4H 408450 sc-eQTL 1.54e-01 -0.132 0.0926 0.625 CD8_TCM L2
ENSG00000111145 ELK3 257595 sc-eQTL 2.89e-01 0.0835 0.0786 0.625 CD8_TCM L2
ENSG00000136014 USP44 900494 sc-eQTL 9.31e-01 -0.00742 0.0854 0.625 CD8_TCM L2
ENSG00000139343 SNRPF 593042 sc-eQTL 2.64e-01 0.101 0.0905 0.625 CD8_TCM L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 3.45e-01 -0.084 0.0887 0.625 CD8_TCM L2
ENSG00000059758 CDK17 51490 sc-eQTL 7.29e-01 -0.028 0.0807 0.632 CD8_TEM L2
ENSG00000111142 METAP2 978450 sc-eQTL 3.06e-01 0.097 0.0945 0.632 CD8_TEM L2
ENSG00000111144 LTA4H 408450 sc-eQTL 9.06e-01 0.0117 0.0988 0.632 CD8_TEM L2
ENSG00000111145 ELK3 257595 sc-eQTL 8.29e-01 -0.021 0.0972 0.632 CD8_TEM L2
ENSG00000136014 USP44 900494 sc-eQTL 6.33e-01 -0.0396 0.0827 0.632 CD8_TEM L2
ENSG00000139343 SNRPF 593042 sc-eQTL 6.60e-01 -0.0397 0.0903 0.632 CD8_TEM L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 6.92e-01 -0.0388 0.098 0.632 CD8_TEM L2
ENSG00000059758 CDK17 51490 sc-eQTL 8.45e-01 -0.0103 0.0527 0.634 MAIT L2
ENSG00000074527 NTN4 660818 sc-eQTL 5.76e-01 -0.0398 0.0709 0.634 MAIT L2
ENSG00000111142 METAP2 978450 sc-eQTL 5.51e-01 0.0534 0.0893 0.634 MAIT L2
ENSG00000111144 LTA4H 408450 sc-eQTL 1.38e-01 -0.12 0.0809 0.634 MAIT L2
ENSG00000111145 ELK3 257595 sc-eQTL 6.88e-01 -0.0274 0.0682 0.634 MAIT L2
ENSG00000139343 SNRPF 593042 sc-eQTL 1.46e-01 -0.115 0.0787 0.634 MAIT L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 9.43e-01 0.00633 0.0888 0.634 MAIT L2
ENSG00000188596 CFAP54 -37601 sc-eQTL 3.83e-01 -0.0768 0.0879 0.634 MAIT L2
ENSG00000059758 CDK17 51490 sc-eQTL 2.13e-02 0.13 0.0559 0.631 NK_CD56bright L2
ENSG00000111142 METAP2 978450 sc-eQTL 4.15e-01 -0.078 0.0955 0.631 NK_CD56bright L2
ENSG00000111144 LTA4H 408450 sc-eQTL 5.09e-01 -0.0554 0.0838 0.631 NK_CD56bright L2
ENSG00000111145 ELK3 257595 sc-eQTL 5.15e-01 -0.058 0.0889 0.631 NK_CD56bright L2
ENSG00000139343 SNRPF 593042 sc-eQTL 2.08e-01 0.117 0.0927 0.631 NK_CD56bright L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 1.78e-01 0.127 0.0935 0.631 NK_CD56bright L2
ENSG00000059758 CDK17 51490 sc-eQTL 1.23e-01 0.0727 0.047 0.638 NK_CD56dim L2
ENSG00000111142 METAP2 978450 sc-eQTL 5.63e-01 0.0479 0.0827 0.638 NK_CD56dim L2
ENSG00000111144 LTA4H 408450 sc-eQTL 6.01e-01 0.0447 0.0853 0.638 NK_CD56dim L2
ENSG00000111145 ELK3 257595 sc-eQTL 5.50e-01 0.0453 0.0755 0.638 NK_CD56dim L2
ENSG00000139343 SNRPF 593042 sc-eQTL 8.02e-02 -0.126 0.0714 0.638 NK_CD56dim L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 7.98e-01 -0.0212 0.0828 0.638 NK_CD56dim L2
ENSG00000059758 CDK17 51490 sc-eQTL 8.99e-01 0.00948 0.0749 0.639 NK_HLA L2
ENSG00000111142 METAP2 978450 sc-eQTL 4.92e-02 -0.185 0.0934 0.639 NK_HLA L2
ENSG00000111144 LTA4H 408450 sc-eQTL 4.54e-01 -0.0736 0.098 0.639 NK_HLA L2
ENSG00000111145 ELK3 257595 sc-eQTL 3.89e-01 -0.0785 0.0909 0.639 NK_HLA L2
ENSG00000139343 SNRPF 593042 sc-eQTL 4.90e-01 0.0655 0.0948 0.639 NK_HLA L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 9.79e-01 -0.00237 0.0898 0.639 NK_HLA L2
ENSG00000059758 CDK17 51490 sc-eQTL 1.11e-01 0.0827 0.0516 0.638 NK_cytokine L2
ENSG00000111142 METAP2 978450 sc-eQTL 5.48e-01 0.0519 0.0862 0.638 NK_cytokine L2
ENSG00000111144 LTA4H 408450 sc-eQTL 5.08e-01 -0.0582 0.0877 0.638 NK_cytokine L2
ENSG00000111145 ELK3 257595 sc-eQTL 7.45e-01 -0.0273 0.0841 0.638 NK_cytokine L2
ENSG00000139343 SNRPF 593042 sc-eQTL 5.83e-01 0.0392 0.0712 0.638 NK_cytokine L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 4.56e-01 0.0657 0.0879 0.638 NK_cytokine L2
ENSG00000059758 CDK17 51490 sc-eQTL 9.88e-01 -0.00145 0.0975 0.648 PB L2
ENSG00000111142 METAP2 978450 sc-eQTL 3.31e-01 -0.111 0.114 0.648 PB L2
ENSG00000111144 LTA4H 408450 sc-eQTL 2.06e-01 -0.109 0.0854 0.648 PB L2
ENSG00000111145 ELK3 257595 sc-eQTL 9.44e-01 -0.00779 0.11 0.648 PB L2
ENSG00000136014 USP44 900494 sc-eQTL 2.23e-01 0.124 0.101 0.648 PB L2
ENSG00000139343 SNRPF 593042 sc-eQTL 3.94e-01 -0.0917 0.107 0.648 PB L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 7.31e-01 -0.044 0.128 0.648 PB L2
ENSG00000059758 CDK17 51490 sc-eQTL 5.76e-01 0.0322 0.0574 0.63 Pro_T L2
ENSG00000074527 NTN4 660818 sc-eQTL 9.26e-02 -0.108 0.0641 0.63 Pro_T L2
ENSG00000111142 METAP2 978450 sc-eQTL 2.68e-01 0.0843 0.076 0.63 Pro_T L2
ENSG00000111144 LTA4H 408450 sc-eQTL 7.92e-01 0.02 0.0759 0.63 Pro_T L2
ENSG00000111145 ELK3 257595 sc-eQTL 6.78e-01 -0.0381 0.0917 0.63 Pro_T L2
ENSG00000139343 SNRPF 593042 sc-eQTL 8.16e-01 -0.0135 0.0579 0.63 Pro_T L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 4.51e-01 0.0634 0.0839 0.63 Pro_T L2
ENSG00000188596 CFAP54 -37601 sc-eQTL 7.22e-01 0.0242 0.068 0.63 Pro_T L2
ENSG00000059758 CDK17 51490 sc-eQTL 8.24e-01 -0.0141 0.063 0.635 Treg L2
ENSG00000111142 METAP2 978450 sc-eQTL 1.74e-01 0.117 0.0854 0.635 Treg L2
ENSG00000111144 LTA4H 408450 sc-eQTL 8.65e-01 0.0136 0.0799 0.635 Treg L2
ENSG00000111145 ELK3 257595 sc-eQTL 5.73e-01 -0.0408 0.0723 0.635 Treg L2
ENSG00000136014 USP44 900494 sc-eQTL 5.67e-01 0.0465 0.0812 0.635 Treg L2
ENSG00000139343 SNRPF 593042 sc-eQTL 9.95e-02 0.138 0.0832 0.635 Treg L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 3.56e-01 0.0863 0.0933 0.635 Treg L2
ENSG00000059758 CDK17 51490 sc-eQTL 2.92e-01 0.082 0.0776 0.627 cDC L2
ENSG00000084110 HAL 455605 sc-eQTL 3.33e-01 -0.0784 0.0807 0.627 cDC L2
ENSG00000111142 METAP2 978450 sc-eQTL 2.58e-01 -0.111 0.0974 0.627 cDC L2
ENSG00000111144 LTA4H 408450 sc-eQTL 1.10e-01 0.111 0.0689 0.627 cDC L2
ENSG00000111145 ELK3 257595 sc-eQTL 5.67e-02 -0.174 0.0906 0.627 cDC L2
ENSG00000139343 SNRPF 593042 sc-eQTL 2.64e-01 0.0856 0.0764 0.627 cDC L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 8.42e-01 -0.0187 0.0934 0.627 cDC L2
ENSG00000257715 AC007298.1 426647 sc-eQTL 9.64e-01 0.00353 0.0787 0.627 cDC L2
ENSG00000059758 CDK17 51490 sc-eQTL 5.27e-01 -0.0424 0.0669 0.635 cMono_IL1B L2
ENSG00000084110 HAL 455605 sc-eQTL 2.91e-01 -0.0772 0.0729 0.635 cMono_IL1B L2
ENSG00000111142 METAP2 978450 sc-eQTL 2.83e-01 -0.0813 0.0755 0.635 cMono_IL1B L2
ENSG00000111144 LTA4H 408450 sc-eQTL 6.59e-01 0.0349 0.0789 0.635 cMono_IL1B L2
ENSG00000111145 ELK3 257595 sc-eQTL 8.59e-02 -0.104 0.0604 0.635 cMono_IL1B L2
ENSG00000139343 SNRPF 593042 sc-eQTL 5.80e-01 -0.0347 0.0627 0.635 cMono_IL1B L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 2.06e-01 -0.109 0.086 0.635 cMono_IL1B L2
ENSG00000257715 AC007298.1 426647 sc-eQTL 9.08e-01 0.00937 0.0806 0.635 cMono_IL1B L2
ENSG00000059758 CDK17 51490 sc-eQTL 7.10e-01 -0.0283 0.076 0.635 cMono_S100A L2
ENSG00000084110 HAL 455605 sc-eQTL 3.55e-01 0.079 0.0851 0.635 cMono_S100A L2
ENSG00000111142 METAP2 978450 sc-eQTL 9.79e-02 -0.143 0.0857 0.635 cMono_S100A L2
ENSG00000111144 LTA4H 408450 sc-eQTL 9.39e-01 -0.00653 0.0852 0.635 cMono_S100A L2
ENSG00000111145 ELK3 257595 sc-eQTL 4.56e-01 0.0518 0.0693 0.635 cMono_S100A L2
ENSG00000139343 SNRPF 593042 sc-eQTL 8.29e-01 -0.0148 0.0686 0.635 cMono_S100A L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 7.98e-01 0.0238 0.0926 0.635 cMono_S100A L2
ENSG00000257715 AC007298.1 426647 sc-eQTL 6.93e-01 -0.0344 0.0871 0.635 cMono_S100A L2
ENSG00000059758 CDK17 51490 sc-eQTL 3.53e-01 0.0694 0.0745 0.621 gdT L2
ENSG00000074527 NTN4 660818 sc-eQTL 6.98e-01 0.0334 0.0857 0.621 gdT L2
ENSG00000111142 METAP2 978450 sc-eQTL 5.21e-01 -0.0688 0.107 0.621 gdT L2
ENSG00000111144 LTA4H 408450 sc-eQTL 8.74e-01 -0.0178 0.112 0.621 gdT L2
ENSG00000111145 ELK3 257595 sc-eQTL 6.72e-01 -0.0439 0.103 0.621 gdT L2
ENSG00000139343 SNRPF 593042 sc-eQTL 9.20e-01 0.01 0.0999 0.621 gdT L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 3.03e-01 -0.113 0.11 0.621 gdT L2
ENSG00000188596 CFAP54 -37601 sc-eQTL 2.60e-01 0.109 0.0962 0.621 gdT L2
ENSG00000059758 CDK17 51490 sc-eQTL 2.67e-01 -0.0935 0.084 0.627 intMono L2
ENSG00000084110 HAL 455605 sc-eQTL 6.42e-01 0.0396 0.0852 0.627 intMono L2
ENSG00000111142 METAP2 978450 sc-eQTL 2.53e-01 0.11 0.0962 0.627 intMono L2
ENSG00000111144 LTA4H 408450 sc-eQTL 8.71e-01 -0.0142 0.0874 0.627 intMono L2
ENSG00000111145 ELK3 257595 sc-eQTL 2.22e-01 0.0951 0.0776 0.627 intMono L2
ENSG00000139343 SNRPF 593042 sc-eQTL 4.68e-01 -0.0605 0.0831 0.627 intMono L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 7.42e-01 -0.0285 0.0865 0.627 intMono L2
ENSG00000257715 AC007298.1 426647 sc-eQTL 3.85e-01 0.0755 0.0868 0.627 intMono L2
ENSG00000059758 CDK17 51490 sc-eQTL 7.65e-01 0.0203 0.0679 0.624 ncMono L2
ENSG00000084110 HAL 455605 sc-eQTL 1.32e-01 -0.114 0.0754 0.624 ncMono L2
ENSG00000111142 METAP2 978450 sc-eQTL 5.69e-01 -0.0522 0.0916 0.624 ncMono L2
ENSG00000111144 LTA4H 408450 sc-eQTL 3.81e-01 -0.0741 0.0844 0.624 ncMono L2
ENSG00000111145 ELK3 257595 sc-eQTL 1.23e-01 0.112 0.0722 0.624 ncMono L2
ENSG00000139343 SNRPF 593042 sc-eQTL 3.57e-01 -0.0683 0.074 0.624 ncMono L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 7.03e-01 0.03 0.0787 0.624 ncMono L2
ENSG00000257715 AC007298.1 426647 sc-eQTL 4.11e-01 -0.074 0.0897 0.624 ncMono L2
ENSG00000059758 CDK17 51490 sc-eQTL 3.40e-01 -0.0846 0.0885 0.636 pDC L2
ENSG00000084110 HAL 455605 sc-eQTL 5.84e-01 -0.0411 0.0749 0.636 pDC L2
ENSG00000111142 METAP2 978450 sc-eQTL 2.04e-01 0.128 0.101 0.636 pDC L2
ENSG00000111144 LTA4H 408450 sc-eQTL 1.60e-01 0.118 0.0834 0.636 pDC L2
ENSG00000111145 ELK3 257595 sc-eQTL 6.68e-01 -0.0441 0.103 0.636 pDC L2
ENSG00000139343 SNRPF 593042 sc-eQTL 7.73e-01 -0.0258 0.0895 0.636 pDC L2
ENSG00000139350 NEDD1 -455253 sc-eQTL 6.42e-01 -0.046 0.0987 0.636 pDC L2
ENSG00000257715 AC007298.1 426647 sc-eQTL 5.61e-01 0.0493 0.0846 0.636 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 51490 sc-eQTL 4.26e-01 0.0479 0.0601 0.635 B_Memory LOneK1K
ENSG00000111142 METAP2 978450 sc-eQTL 4.30e-01 0.0661 0.0836 0.635 B_Memory LOneK1K
ENSG00000111144 LTA4H 408450 sc-eQTL 8.86e-01 0.00895 0.0625 0.635 B_Memory LOneK1K
ENSG00000111145 ELK3 257595 sc-eQTL 5.45e-01 -0.0433 0.0714 0.635 B_Memory LOneK1K
ENSG00000136014 USP44 900494 sc-eQTL 8.65e-03 -0.232 0.0876 0.635 B_Memory LOneK1K
ENSG00000139343 SNRPF 593042 sc-eQTL 2.77e-01 -0.0753 0.069 0.635 B_Memory LOneK1K
ENSG00000139350 NEDD1 -455253 sc-eQTL 3.45e-01 0.0858 0.0906 0.635 B_Memory LOneK1K
ENSG00000059758 CDK17 51490 sc-eQTL 9.50e-01 0.00321 0.0515 0.635 B_Naive LOneK1K
ENSG00000111142 METAP2 978450 sc-eQTL 9.71e-01 -0.00254 0.0697 0.635 B_Naive LOneK1K
ENSG00000111144 LTA4H 408450 sc-eQTL 8.53e-01 0.0107 0.0578 0.635 B_Naive LOneK1K
ENSG00000111145 ELK3 257595 sc-eQTL 9.36e-01 0.00533 0.0658 0.635 B_Naive LOneK1K
ENSG00000136014 USP44 900494 sc-eQTL 7.22e-02 -0.144 0.0799 0.635 B_Naive LOneK1K
ENSG00000139343 SNRPF 593042 sc-eQTL 2.61e-02 0.147 0.0655 0.635 B_Naive LOneK1K
ENSG00000139350 NEDD1 -455253 sc-eQTL 2.19e-01 -0.108 0.0874 0.635 B_Naive LOneK1K
ENSG00000059758 CDK17 51490 sc-eQTL 5.40e-01 -0.037 0.0603 0.635 CD14_Mono LOneK1K
ENSG00000084110 HAL 455605 sc-eQTL 6.85e-01 -0.0297 0.0731 0.635 CD14_Mono LOneK1K
ENSG00000111142 METAP2 978450 sc-eQTL 9.55e-02 -0.115 0.0684 0.635 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 408450 sc-eQTL 8.05e-01 0.0198 0.0802 0.635 CD14_Mono LOneK1K
ENSG00000111145 ELK3 257595 sc-eQTL 6.31e-01 -0.0278 0.0579 0.635 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 593042 sc-eQTL 5.62e-01 -0.0324 0.0559 0.635 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -455253 sc-eQTL 4.85e-01 -0.0614 0.0876 0.635 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 426647 sc-eQTL 9.27e-01 -0.00742 0.0813 0.635 CD14_Mono LOneK1K
ENSG00000059758 CDK17 51490 sc-eQTL 3.53e-01 -0.0577 0.062 0.634 CD16_Mono LOneK1K
ENSG00000084110 HAL 455605 sc-eQTL 3.75e-01 -0.0651 0.0733 0.634 CD16_Mono LOneK1K
ENSG00000111142 METAP2 978450 sc-eQTL 7.67e-01 0.0247 0.0833 0.634 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 408450 sc-eQTL 5.59e-01 -0.0476 0.0814 0.634 CD16_Mono LOneK1K
ENSG00000111145 ELK3 257595 sc-eQTL 3.60e-01 0.0552 0.0602 0.634 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 593042 sc-eQTL 2.70e-01 -0.0686 0.062 0.634 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -455253 sc-eQTL 9.77e-01 -0.00229 0.0797 0.634 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 426647 sc-eQTL 7.06e-01 -0.0319 0.0843 0.634 CD16_Mono LOneK1K
ENSG00000059758 CDK17 51490 sc-eQTL 1.43e-01 0.0649 0.0441 0.638 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 978450 sc-eQTL 9.46e-01 -0.00455 0.0675 0.638 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 408450 sc-eQTL 6.86e-01 -0.0312 0.0771 0.638 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 257595 sc-eQTL 9.99e-01 -0.000116 0.0706 0.638 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 593042 sc-eQTL 3.48e-01 -0.0567 0.0602 0.638 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -455253 sc-eQTL 9.56e-01 0.00415 0.0753 0.638 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000139343 SNRPF 593042 eQTL 0.0293 0.0208 0.00954 0.00105 0.0 0.361
ENSG00000139344 AMDHD1 508639 eQTL 0.0437 -0.0715 0.0354 0.0 0.0 0.361
ENSG00000139350 NEDD1 -455253 eQTL 3.73e-06 -0.118 0.0253 0.0 0.0 0.361
ENSG00000188596 CFAP54 -37605 eQTL 0.00094 -0.0705 0.0212 0.0 0.0 0.361
ENSG00000257715 AC007298.1 426647 eQTL 0.0416 0.0417 0.0204 0.0 0.0 0.361

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000139350 NEDD1 -455253 1.29e-06 1.01e-06 2.72e-07 1.28e-06 3.69e-07 6.02e-07 1.51e-06 3.34e-07 1.29e-06 6.14e-07 1.84e-06 6.43e-07 2.57e-06 3.31e-07 4.14e-07 8.48e-07 9.23e-07 7.89e-07 6.4e-07 4.68e-07 7.8e-07 1.38e-06 1.35e-06 5.61e-07 2.35e-06 7.43e-07 6.85e-07 7.51e-07 1.49e-06 1.28e-06 5.77e-07 1.54e-07 4e-07 1.71e-06 6.86e-07 6.3e-07 8.21e-07 2.54e-07 5e-07 3.64e-07 2.56e-07 2.39e-06 3.83e-07 1.91e-07 1.69e-07 3.26e-07 1.87e-07 2.24e-07 2.89e-07
ENSG00000188596 CFAP54 -37605 3.54e-05 3.1e-05 6.39e-06 1.28e-05 4.31e-06 1.32e-05 4.33e-05 3.8e-06 2.53e-05 1.04e-05 3.69e-05 1.42e-05 4.95e-05 1.17e-05 5.99e-06 1.56e-05 1.61e-05 1.98e-05 7.36e-06 5.37e-06 1.04e-05 2.66e-05 3.45e-05 7.65e-06 4.15e-05 5.98e-06 1.25e-05 9e-06 3.09e-05 1.68e-05 1.55e-05 1.66e-06 1.92e-06 5.34e-06 9.3e-06 4.55e-06 2.37e-06 2.74e-06 4.29e-06 3.3e-06 1.63e-06 4.61e-05 4.31e-06 2.8e-07 2.1e-06 3.72e-06 3.07e-06 1.49e-06 1.54e-06