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Genes within 1Mb (chr12:96429209:C:A):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 28729 sc-eQTL 3.26e-01 -0.144 0.147 0.051 CD8_TCM L2
ENSG00000111142 METAP2 955689 sc-eQTL 1.19e-03 0.702 0.213 0.051 CD8_TCM L2
ENSG00000111144 LTA4H 385689 sc-eQTL 3.91e-01 0.185 0.216 0.051 CD8_TCM L2
ENSG00000111145 ELK3 234834 sc-eQTL 6.14e-01 -0.0923 0.183 0.051 CD8_TCM L2
ENSG00000136014 USP44 877733 sc-eQTL 6.05e-01 0.103 0.198 0.051 CD8_TCM L2
ENSG00000139343 SNRPF 570281 sc-eQTL 8.15e-01 0.0494 0.211 0.051 CD8_TCM L2
ENSG00000139350 NEDD1 -478014 sc-eQTL 2.71e-01 0.227 0.206 0.051 CD8_TCM L2
ENSG00000059758 CDK17 28729 sc-eQTL 8.70e-01 -0.0277 0.169 0.05 NK_HLA L2
ENSG00000111142 METAP2 955689 sc-eQTL 9.22e-01 -0.0208 0.212 0.05 NK_HLA L2
ENSG00000111144 LTA4H 385689 sc-eQTL 6.38e-01 -0.104 0.221 0.05 NK_HLA L2
ENSG00000111145 ELK3 234834 sc-eQTL 6.35e-01 -0.0975 0.205 0.05 NK_HLA L2
ENSG00000139343 SNRPF 570281 sc-eQTL 7.14e-01 -0.0783 0.214 0.05 NK_HLA L2
ENSG00000139350 NEDD1 -478014 sc-eQTL 9.71e-01 0.00735 0.202 0.05 NK_HLA L2
ENSG00000059758 CDK17 28729 sc-eQTL 7.60e-01 -0.0401 0.131 0.05 Pro_T L2
ENSG00000074527 NTN4 638057 sc-eQTL 3.91e-01 0.126 0.147 0.05 Pro_T L2
ENSG00000111142 METAP2 955689 sc-eQTL 8.87e-01 0.0247 0.174 0.05 Pro_T L2
ENSG00000111144 LTA4H 385689 sc-eQTL 8.07e-01 0.0423 0.173 0.05 Pro_T L2
ENSG00000111145 ELK3 234834 sc-eQTL 5.56e-01 0.123 0.209 0.05 Pro_T L2
ENSG00000139343 SNRPF 570281 sc-eQTL 4.33e-02 0.266 0.131 0.05 Pro_T L2
ENSG00000139350 NEDD1 -478014 sc-eQTL 3.12e-01 0.194 0.191 0.05 Pro_T L2
ENSG00000188596 CFAP54 -60362 sc-eQTL 7.59e-01 -0.0476 0.155 0.05 Pro_T L2
ENSG00000059758 CDK17 28729 sc-eQTL 1.13e-01 -0.286 0.179 0.051 cDC L2
ENSG00000084110 HAL 432844 sc-eQTL 3.97e-03 0.536 0.184 0.051 cDC L2
ENSG00000111142 METAP2 955689 sc-eQTL 1.20e-01 0.352 0.225 0.051 cDC L2
ENSG00000111144 LTA4H 385689 sc-eQTL 3.47e-02 -0.338 0.159 0.051 cDC L2
ENSG00000111145 ELK3 234834 sc-eQTL 3.54e-01 0.197 0.212 0.051 cDC L2
ENSG00000139343 SNRPF 570281 sc-eQTL 6.27e-02 -0.33 0.176 0.051 cDC L2
ENSG00000139350 NEDD1 -478014 sc-eQTL 1.21e-01 0.336 0.215 0.051 cDC L2
ENSG00000257715 AC007298.1 403886 sc-eQTL 2.03e-01 -0.233 0.182 0.051 cDC L2
ENSG00000059758 CDK17 28729 sc-eQTL 3.70e-01 -0.152 0.169 0.052 gdT L2
ENSG00000074527 NTN4 638057 sc-eQTL 8.08e-01 0.0473 0.194 0.052 gdT L2
ENSG00000111142 METAP2 955689 sc-eQTL 4.21e-01 -0.196 0.242 0.052 gdT L2
ENSG00000111144 LTA4H 385689 sc-eQTL 4.65e-01 0.185 0.253 0.052 gdT L2
ENSG00000111145 ELK3 234834 sc-eQTL 4.47e-01 0.178 0.234 0.052 gdT L2
ENSG00000139343 SNRPF 570281 sc-eQTL 9.65e-01 0.01 0.226 0.052 gdT L2
ENSG00000139350 NEDD1 -478014 sc-eQTL 7.18e-01 0.0901 0.25 0.052 gdT L2
ENSG00000188596 CFAP54 -60362 sc-eQTL 5.99e-01 0.115 0.219 0.052 gdT L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000139350 NEDD1 -478014 eQTL 0.0294 -0.118 0.0539 0.0 0.0 0.0486
ENSG00000257878 AC007298.2 432688 eQTL 0.0368 0.0548 0.0262 0.00146 0.0 0.0486

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina