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Genes within 1Mb (chr12:96420177:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 19697 sc-eQTL 2.74e-01 -0.0561 0.0512 0.731 B L1
ENSG00000111142 METAP2 946657 sc-eQTL 9.53e-01 -0.00427 0.0727 0.731 B L1
ENSG00000111144 LTA4H 376657 sc-eQTL 6.68e-01 -0.0274 0.0638 0.731 B L1
ENSG00000111145 ELK3 225802 sc-eQTL 7.95e-01 -0.0176 0.0679 0.731 B L1
ENSG00000136014 USP44 868701 sc-eQTL 1.63e-03 -0.261 0.0818 0.731 B L1
ENSG00000139343 SNRPF 561249 sc-eQTL 4.01e-01 -0.0519 0.0616 0.731 B L1
ENSG00000139350 NEDD1 -487046 sc-eQTL 6.95e-01 -0.0353 0.0901 0.731 B L1
ENSG00000059758 CDK17 19697 sc-eQTL 7.95e-01 0.0109 0.0419 0.731 CD4T L1
ENSG00000111142 METAP2 946657 sc-eQTL 4.58e-01 -0.0434 0.0584 0.731 CD4T L1
ENSG00000111144 LTA4H 376657 sc-eQTL 7.67e-01 0.0171 0.0576 0.731 CD4T L1
ENSG00000111145 ELK3 225802 sc-eQTL 1.40e-01 -0.0919 0.0621 0.731 CD4T L1
ENSG00000136014 USP44 868701 sc-eQTL 1.89e-01 0.117 0.0886 0.731 CD4T L1
ENSG00000139343 SNRPF 561249 sc-eQTL 5.53e-01 -0.0324 0.0545 0.731 CD4T L1
ENSG00000139350 NEDD1 -487046 sc-eQTL 8.53e-02 0.115 0.0667 0.731 CD4T L1
ENSG00000059758 CDK17 19697 sc-eQTL 3.01e-01 -0.0445 0.043 0.731 CD8T L1
ENSG00000111142 METAP2 946657 sc-eQTL 2.75e-01 0.0759 0.0693 0.731 CD8T L1
ENSG00000111144 LTA4H 376657 sc-eQTL 9.67e-01 -0.00189 0.0462 0.731 CD8T L1
ENSG00000111145 ELK3 225802 sc-eQTL 2.52e-02 -0.155 0.0688 0.731 CD8T L1
ENSG00000136014 USP44 868701 sc-eQTL 9.19e-01 0.00806 0.0791 0.731 CD8T L1
ENSG00000139343 SNRPF 561249 sc-eQTL 4.38e-01 0.0443 0.0569 0.731 CD8T L1
ENSG00000139350 NEDD1 -487046 sc-eQTL 6.92e-01 0.03 0.0758 0.731 CD8T L1
ENSG00000059758 CDK17 19697 sc-eQTL 1.01e-01 -0.132 0.0799 0.732 DC L1
ENSG00000084110 HAL 423812 sc-eQTL 9.76e-01 -0.00271 0.0916 0.732 DC L1
ENSG00000111142 METAP2 946657 sc-eQTL 8.51e-01 0.019 0.101 0.732 DC L1
ENSG00000111144 LTA4H 376657 sc-eQTL 3.71e-01 -0.0671 0.0747 0.732 DC L1
ENSG00000111145 ELK3 225802 sc-eQTL 6.25e-01 -0.0448 0.0916 0.732 DC L1
ENSG00000139343 SNRPF 561249 sc-eQTL 8.14e-01 -0.018 0.0763 0.732 DC L1
ENSG00000139350 NEDD1 -487046 sc-eQTL 7.12e-01 -0.0362 0.0979 0.732 DC L1
ENSG00000257715 AC007298.1 394854 sc-eQTL 1.94e-01 -0.115 0.088 0.732 DC L1
ENSG00000059758 CDK17 19697 sc-eQTL 1.39e-02 -0.16 0.0646 0.731 Mono L1
ENSG00000084110 HAL 423812 sc-eQTL 7.19e-01 -0.0297 0.0825 0.731 Mono L1
ENSG00000111142 METAP2 946657 sc-eQTL 5.75e-01 -0.0401 0.0713 0.731 Mono L1
ENSG00000111144 LTA4H 376657 sc-eQTL 8.69e-01 0.0154 0.0932 0.731 Mono L1
ENSG00000111145 ELK3 225802 sc-eQTL 8.00e-01 0.0159 0.0626 0.731 Mono L1
ENSG00000139343 SNRPF 561249 sc-eQTL 5.46e-01 -0.0356 0.059 0.731 Mono L1
ENSG00000139350 NEDD1 -487046 sc-eQTL 9.16e-02 -0.153 0.09 0.731 Mono L1
ENSG00000257715 AC007298.1 394854 sc-eQTL 4.22e-01 0.0705 0.0877 0.731 Mono L1
ENSG00000059758 CDK17 19697 sc-eQTL 7.37e-02 0.0849 0.0472 0.732 NK L1
ENSG00000111142 METAP2 946657 sc-eQTL 6.46e-01 0.0324 0.0704 0.732 NK L1
ENSG00000111144 LTA4H 376657 sc-eQTL 8.25e-03 0.212 0.0795 0.732 NK L1
ENSG00000111145 ELK3 225802 sc-eQTL 6.22e-01 0.0378 0.0766 0.732 NK L1
ENSG00000139343 SNRPF 561249 sc-eQTL 1.02e-01 -0.104 0.0632 0.732 NK L1
ENSG00000139350 NEDD1 -487046 sc-eQTL 3.38e-01 -0.0772 0.0803 0.732 NK L1
ENSG00000059758 CDK17 19697 sc-eQTL 3.18e-02 0.087 0.0403 0.731 Other_T L1
ENSG00000074527 NTN4 629025 sc-eQTL 2.05e-01 -0.0953 0.075 0.731 Other_T L1
ENSG00000111142 METAP2 946657 sc-eQTL 5.50e-02 0.149 0.077 0.731 Other_T L1
ENSG00000111144 LTA4H 376657 sc-eQTL 9.39e-01 0.0065 0.085 0.731 Other_T L1
ENSG00000111145 ELK3 225802 sc-eQTL 8.79e-01 0.0101 0.0664 0.731 Other_T L1
ENSG00000139343 SNRPF 561249 sc-eQTL 5.24e-01 -0.0393 0.0616 0.731 Other_T L1
ENSG00000139350 NEDD1 -487046 sc-eQTL 4.06e-01 -0.0781 0.0938 0.731 Other_T L1
ENSG00000188596 CFAP54 -69394 sc-eQTL 8.80e-01 -0.0147 0.0973 0.731 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 19697 sc-eQTL 8.42e-01 -0.0185 0.0924 0.735 B_Activated L2
ENSG00000111142 METAP2 946657 sc-eQTL 2.04e-01 0.148 0.116 0.735 B_Activated L2
ENSG00000111144 LTA4H 376657 sc-eQTL 9.55e-01 0.00592 0.105 0.735 B_Activated L2
ENSG00000111145 ELK3 225802 sc-eQTL 3.14e-01 0.112 0.111 0.735 B_Activated L2
ENSG00000136014 USP44 868701 sc-eQTL 6.65e-01 -0.0368 0.0851 0.735 B_Activated L2
ENSG00000139343 SNRPF 561249 sc-eQTL 3.86e-01 0.0906 0.104 0.735 B_Activated L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 6.47e-01 0.0501 0.109 0.735 B_Activated L2
ENSG00000059758 CDK17 19697 sc-eQTL 4.31e-01 -0.0627 0.0793 0.73 B_Intermediate L2
ENSG00000111142 METAP2 946657 sc-eQTL 9.00e-01 -0.0115 0.0911 0.73 B_Intermediate L2
ENSG00000111144 LTA4H 376657 sc-eQTL 6.95e-01 -0.0302 0.0769 0.73 B_Intermediate L2
ENSG00000111145 ELK3 225802 sc-eQTL 5.30e-01 -0.0546 0.0867 0.73 B_Intermediate L2
ENSG00000136014 USP44 868701 sc-eQTL 2.85e-02 -0.223 0.101 0.73 B_Intermediate L2
ENSG00000139343 SNRPF 561249 sc-eQTL 7.22e-01 0.0308 0.0864 0.73 B_Intermediate L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 1.55e-01 -0.144 0.101 0.73 B_Intermediate L2
ENSG00000059758 CDK17 19697 sc-eQTL 9.16e-01 -0.00803 0.0764 0.733 B_Memory L2
ENSG00000111142 METAP2 946657 sc-eQTL 9.99e-01 0.000147 0.0993 0.733 B_Memory L2
ENSG00000111144 LTA4H 376657 sc-eQTL 4.21e-01 -0.0709 0.088 0.733 B_Memory L2
ENSG00000111145 ELK3 225802 sc-eQTL 5.19e-01 0.0559 0.0866 0.733 B_Memory L2
ENSG00000136014 USP44 868701 sc-eQTL 4.81e-01 -0.0671 0.095 0.733 B_Memory L2
ENSG00000139343 SNRPF 561249 sc-eQTL 7.01e-01 0.0353 0.0918 0.733 B_Memory L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 3.46e-01 0.0958 0.101 0.733 B_Memory L2
ENSG00000059758 CDK17 19697 sc-eQTL 5.43e-01 0.0391 0.0641 0.731 B_Naive1 L2
ENSG00000111142 METAP2 946657 sc-eQTL 6.40e-01 0.0389 0.083 0.731 B_Naive1 L2
ENSG00000111144 LTA4H 376657 sc-eQTL 2.22e-01 -0.082 0.067 0.731 B_Naive1 L2
ENSG00000111145 ELK3 225802 sc-eQTL 8.44e-01 -0.0157 0.0795 0.731 B_Naive1 L2
ENSG00000136014 USP44 868701 sc-eQTL 2.23e-02 -0.227 0.0987 0.731 B_Naive1 L2
ENSG00000139343 SNRPF 561249 sc-eQTL 7.47e-01 0.025 0.0773 0.731 B_Naive1 L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 8.16e-01 0.0231 0.0991 0.731 B_Naive1 L2
ENSG00000059758 CDK17 19697 sc-eQTL 9.18e-02 -0.135 0.0795 0.732 B_Naive2 L2
ENSG00000111142 METAP2 946657 sc-eQTL 6.84e-01 0.0394 0.0966 0.732 B_Naive2 L2
ENSG00000111144 LTA4H 376657 sc-eQTL 3.87e-01 -0.0656 0.0757 0.732 B_Naive2 L2
ENSG00000111145 ELK3 225802 sc-eQTL 3.34e-01 -0.0864 0.0892 0.732 B_Naive2 L2
ENSG00000136014 USP44 868701 sc-eQTL 5.83e-01 -0.053 0.0965 0.732 B_Naive2 L2
ENSG00000139343 SNRPF 561249 sc-eQTL 3.23e-01 -0.0877 0.0886 0.732 B_Naive2 L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 9.08e-01 -0.0122 0.106 0.732 B_Naive2 L2
ENSG00000059758 CDK17 19697 sc-eQTL 1.70e-01 -0.101 0.0733 0.73 CD4_CTL L2
ENSG00000111142 METAP2 946657 sc-eQTL 8.03e-01 -0.0263 0.105 0.73 CD4_CTL L2
ENSG00000111144 LTA4H 376657 sc-eQTL 4.77e-01 -0.074 0.104 0.73 CD4_CTL L2
ENSG00000111145 ELK3 225802 sc-eQTL 2.01e-02 0.243 0.104 0.73 CD4_CTL L2
ENSG00000136014 USP44 868701 sc-eQTL 7.88e-01 -0.0226 0.084 0.73 CD4_CTL L2
ENSG00000139343 SNRPF 561249 sc-eQTL 1.34e-01 -0.137 0.0909 0.73 CD4_CTL L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 2.91e-02 -0.23 0.104 0.73 CD4_CTL L2
ENSG00000059758 CDK17 19697 sc-eQTL 9.65e-01 -0.00205 0.0461 0.731 CD4_Naive L2
ENSG00000111142 METAP2 946657 sc-eQTL 5.96e-01 -0.0353 0.0665 0.731 CD4_Naive L2
ENSG00000111144 LTA4H 376657 sc-eQTL 8.73e-01 0.0107 0.0667 0.731 CD4_Naive L2
ENSG00000111145 ELK3 225802 sc-eQTL 2.79e-01 -0.0722 0.0665 0.731 CD4_Naive L2
ENSG00000136014 USP44 868701 sc-eQTL 1.04e-01 0.152 0.0929 0.731 CD4_Naive L2
ENSG00000139343 SNRPF 561249 sc-eQTL 7.12e-01 -0.0219 0.0593 0.731 CD4_Naive L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 3.27e-01 0.0715 0.0728 0.731 CD4_Naive L2
ENSG00000059758 CDK17 19697 sc-eQTL 9.53e-01 0.00266 0.0447 0.731 CD4_TCM L2
ENSG00000111142 METAP2 946657 sc-eQTL 5.25e-01 -0.0485 0.0761 0.731 CD4_TCM L2
ENSG00000111144 LTA4H 376657 sc-eQTL 5.23e-01 0.0484 0.0758 0.731 CD4_TCM L2
ENSG00000111145 ELK3 225802 sc-eQTL 1.06e-01 -0.12 0.0741 0.731 CD4_TCM L2
ENSG00000136014 USP44 868701 sc-eQTL 2.59e-01 0.116 0.103 0.731 CD4_TCM L2
ENSG00000139343 SNRPF 561249 sc-eQTL 7.01e-01 -0.0236 0.0612 0.731 CD4_TCM L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 4.43e-02 0.168 0.0828 0.731 CD4_TCM L2
ENSG00000059758 CDK17 19697 sc-eQTL 6.84e-02 0.1 0.0548 0.731 CD4_TEM L2
ENSG00000111142 METAP2 946657 sc-eQTL 5.03e-01 -0.0618 0.0922 0.731 CD4_TEM L2
ENSG00000111144 LTA4H 376657 sc-eQTL 3.01e-01 0.0882 0.085 0.731 CD4_TEM L2
ENSG00000111145 ELK3 225802 sc-eQTL 2.48e-01 -0.0915 0.0789 0.731 CD4_TEM L2
ENSG00000136014 USP44 868701 sc-eQTL 3.04e-01 0.1 0.0972 0.731 CD4_TEM L2
ENSG00000139343 SNRPF 561249 sc-eQTL 2.56e-01 -0.0942 0.0827 0.731 CD4_TEM L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 3.84e-01 0.0856 0.0981 0.731 CD4_TEM L2
ENSG00000059758 CDK17 19697 sc-eQTL 7.88e-01 0.0146 0.0544 0.731 CD8_CTL L2
ENSG00000111142 METAP2 946657 sc-eQTL 4.81e-01 0.0664 0.094 0.731 CD8_CTL L2
ENSG00000111144 LTA4H 376657 sc-eQTL 9.90e-01 -0.00118 0.0983 0.731 CD8_CTL L2
ENSG00000111145 ELK3 225802 sc-eQTL 4.62e-01 0.0659 0.0894 0.731 CD8_CTL L2
ENSG00000136014 USP44 868701 sc-eQTL 8.02e-01 0.025 0.0997 0.731 CD8_CTL L2
ENSG00000139343 SNRPF 561249 sc-eQTL 6.05e-01 0.0426 0.0822 0.731 CD8_CTL L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 3.28e-01 -0.0902 0.092 0.731 CD8_CTL L2
ENSG00000059758 CDK17 19697 sc-eQTL 1.11e-01 -0.102 0.0639 0.731 CD8_Naive L2
ENSG00000111142 METAP2 946657 sc-eQTL 4.81e-01 0.0603 0.0853 0.731 CD8_Naive L2
ENSG00000111144 LTA4H 376657 sc-eQTL 6.81e-01 0.0316 0.077 0.731 CD8_Naive L2
ENSG00000111145 ELK3 225802 sc-eQTL 8.28e-03 -0.214 0.0801 0.731 CD8_Naive L2
ENSG00000136014 USP44 868701 sc-eQTL 9.32e-01 -0.00727 0.0855 0.731 CD8_Naive L2
ENSG00000139343 SNRPF 561249 sc-eQTL 6.69e-01 0.0313 0.0732 0.731 CD8_Naive L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 1.66e-01 0.121 0.0868 0.731 CD8_Naive L2
ENSG00000059758 CDK17 19697 sc-eQTL 9.74e-01 -0.00226 0.0689 0.72 CD8_TCM L2
ENSG00000111142 METAP2 946657 sc-eQTL 3.52e-01 -0.0957 0.103 0.72 CD8_TCM L2
ENSG00000111144 LTA4H 376657 sc-eQTL 9.81e-01 0.00242 0.101 0.72 CD8_TCM L2
ENSG00000111145 ELK3 225802 sc-eQTL 9.72e-02 -0.142 0.0852 0.72 CD8_TCM L2
ENSG00000136014 USP44 868701 sc-eQTL 8.72e-01 0.015 0.0929 0.72 CD8_TCM L2
ENSG00000139343 SNRPF 561249 sc-eQTL 3.81e-01 -0.0865 0.0986 0.72 CD8_TCM L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 7.68e-01 -0.0285 0.0967 0.72 CD8_TCM L2
ENSG00000059758 CDK17 19697 sc-eQTL 7.96e-01 -0.0229 0.0883 0.731 CD8_TEM L2
ENSG00000111142 METAP2 946657 sc-eQTL 2.20e-02 0.236 0.102 0.731 CD8_TEM L2
ENSG00000111144 LTA4H 376657 sc-eQTL 4.86e-01 0.0754 0.108 0.731 CD8_TEM L2
ENSG00000111145 ELK3 225802 sc-eQTL 3.00e-01 0.11 0.106 0.731 CD8_TEM L2
ENSG00000136014 USP44 868701 sc-eQTL 1.12e-01 -0.144 0.09 0.731 CD8_TEM L2
ENSG00000139343 SNRPF 561249 sc-eQTL 9.75e-01 -0.00307 0.0989 0.731 CD8_TEM L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 7.51e-01 -0.0341 0.107 0.731 CD8_TEM L2
ENSG00000059758 CDK17 19697 sc-eQTL 7.00e-01 0.0226 0.0585 0.729 MAIT L2
ENSG00000074527 NTN4 629025 sc-eQTL 5.12e-01 -0.0517 0.0788 0.729 MAIT L2
ENSG00000111142 METAP2 946657 sc-eQTL 6.73e-02 0.181 0.0985 0.729 MAIT L2
ENSG00000111144 LTA4H 376657 sc-eQTL 7.88e-01 0.0244 0.0904 0.729 MAIT L2
ENSG00000111145 ELK3 225802 sc-eQTL 8.17e-01 -0.0176 0.0759 0.729 MAIT L2
ENSG00000139343 SNRPF 561249 sc-eQTL 3.73e-01 -0.0783 0.0877 0.729 MAIT L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 9.09e-01 -0.0113 0.0987 0.729 MAIT L2
ENSG00000188596 CFAP54 -69394 sc-eQTL 3.57e-01 -0.09 0.0976 0.729 MAIT L2
ENSG00000059758 CDK17 19697 sc-eQTL 2.43e-02 0.136 0.06 0.727 NK_CD56bright L2
ENSG00000111142 METAP2 946657 sc-eQTL 5.56e-01 -0.0604 0.103 0.727 NK_CD56bright L2
ENSG00000111144 LTA4H 376657 sc-eQTL 3.71e-01 0.0806 0.0898 0.727 NK_CD56bright L2
ENSG00000111145 ELK3 225802 sc-eQTL 6.68e-01 0.0409 0.0954 0.727 NK_CD56bright L2
ENSG00000139343 SNRPF 561249 sc-eQTL 8.50e-01 -0.0189 0.0998 0.727 NK_CD56bright L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 4.05e-01 0.0838 0.101 0.727 NK_CD56bright L2
ENSG00000059758 CDK17 19697 sc-eQTL 3.25e-02 0.109 0.0507 0.733 NK_CD56dim L2
ENSG00000111142 METAP2 946657 sc-eQTL 1.39e-01 0.133 0.0894 0.733 NK_CD56dim L2
ENSG00000111144 LTA4H 376657 sc-eQTL 1.03e-02 0.236 0.0912 0.733 NK_CD56dim L2
ENSG00000111145 ELK3 225802 sc-eQTL 4.19e-01 -0.0664 0.0819 0.733 NK_CD56dim L2
ENSG00000139343 SNRPF 561249 sc-eQTL 1.19e-02 -0.195 0.0769 0.733 NK_CD56dim L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 4.23e-01 -0.0721 0.0898 0.733 NK_CD56dim L2
ENSG00000059758 CDK17 19697 sc-eQTL 7.82e-01 0.0224 0.0808 0.731 NK_HLA L2
ENSG00000111142 METAP2 946657 sc-eQTL 5.60e-01 -0.0594 0.102 0.731 NK_HLA L2
ENSG00000111144 LTA4H 376657 sc-eQTL 8.61e-01 0.0186 0.106 0.731 NK_HLA L2
ENSG00000111145 ELK3 225802 sc-eQTL 5.55e-01 0.0581 0.0982 0.731 NK_HLA L2
ENSG00000139343 SNRPF 561249 sc-eQTL 5.96e-01 0.0543 0.102 0.731 NK_HLA L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 1.32e-01 -0.146 0.0963 0.731 NK_HLA L2
ENSG00000059758 CDK17 19697 sc-eQTL 6.45e-01 0.0261 0.0565 0.733 NK_cytokine L2
ENSG00000111142 METAP2 946657 sc-eQTL 6.54e-01 -0.0421 0.0938 0.733 NK_cytokine L2
ENSG00000111144 LTA4H 376657 sc-eQTL 2.48e-01 0.11 0.0953 0.733 NK_cytokine L2
ENSG00000111145 ELK3 225802 sc-eQTL 1.69e-01 0.126 0.0911 0.733 NK_cytokine L2
ENSG00000139343 SNRPF 561249 sc-eQTL 8.23e-01 0.0174 0.0775 0.733 NK_cytokine L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 5.02e-01 -0.0644 0.0957 0.733 NK_cytokine L2
ENSG00000059758 CDK17 19697 sc-eQTL 1.68e-01 -0.16 0.115 0.756 PB L2
ENSG00000111142 METAP2 946657 sc-eQTL 1.13e-01 0.215 0.134 0.756 PB L2
ENSG00000111144 LTA4H 376657 sc-eQTL 5.83e-01 0.0564 0.102 0.756 PB L2
ENSG00000111145 ELK3 225802 sc-eQTL 4.52e-01 0.099 0.131 0.756 PB L2
ENSG00000136014 USP44 868701 sc-eQTL 7.20e-01 -0.0436 0.122 0.756 PB L2
ENSG00000139343 SNRPF 561249 sc-eQTL 4.65e-01 -0.0937 0.128 0.756 PB L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 5.13e-01 0.0999 0.152 0.756 PB L2
ENSG00000059758 CDK17 19697 sc-eQTL 5.87e-01 0.0346 0.0635 0.726 Pro_T L2
ENSG00000074527 NTN4 629025 sc-eQTL 5.17e-01 -0.0463 0.0713 0.726 Pro_T L2
ENSG00000111142 METAP2 946657 sc-eQTL 7.41e-01 0.0279 0.0843 0.726 Pro_T L2
ENSG00000111144 LTA4H 376657 sc-eQTL 1.98e-01 -0.108 0.0836 0.726 Pro_T L2
ENSG00000111145 ELK3 225802 sc-eQTL 1.81e-01 -0.136 0.101 0.726 Pro_T L2
ENSG00000139343 SNRPF 561249 sc-eQTL 7.03e-01 -0.0244 0.064 0.726 Pro_T L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 5.50e-01 -0.0556 0.0929 0.726 Pro_T L2
ENSG00000188596 CFAP54 -69394 sc-eQTL 9.29e-01 -0.00669 0.0752 0.726 Pro_T L2
ENSG00000059758 CDK17 19697 sc-eQTL 2.17e-01 0.0868 0.0701 0.731 Treg L2
ENSG00000111142 METAP2 946657 sc-eQTL 4.38e-01 -0.0744 0.0956 0.731 Treg L2
ENSG00000111144 LTA4H 376657 sc-eQTL 8.96e-01 0.0117 0.0891 0.731 Treg L2
ENSG00000111145 ELK3 225802 sc-eQTL 9.06e-01 -0.00959 0.0808 0.731 Treg L2
ENSG00000136014 USP44 868701 sc-eQTL 5.81e-01 0.05 0.0906 0.731 Treg L2
ENSG00000139343 SNRPF 561249 sc-eQTL 6.90e-01 0.0373 0.0935 0.731 Treg L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 3.09e-01 0.106 0.104 0.731 Treg L2
ENSG00000059758 CDK17 19697 sc-eQTL 9.63e-01 -0.00393 0.0851 0.734 cDC L2
ENSG00000084110 HAL 423812 sc-eQTL 3.61e-01 0.0807 0.0882 0.734 cDC L2
ENSG00000111142 METAP2 946657 sc-eQTL 3.31e-01 0.104 0.106 0.734 cDC L2
ENSG00000111144 LTA4H 376657 sc-eQTL 7.54e-01 0.0238 0.0758 0.734 cDC L2
ENSG00000111145 ELK3 225802 sc-eQTL 7.48e-01 -0.0322 0.1 0.734 cDC L2
ENSG00000139343 SNRPF 561249 sc-eQTL 2.31e-01 -0.1 0.0834 0.734 cDC L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 2.19e-01 0.125 0.102 0.734 cDC L2
ENSG00000257715 AC007298.1 394854 sc-eQTL 9.58e-01 0.0045 0.086 0.734 cDC L2
ENSG00000059758 CDK17 19697 sc-eQTL 5.30e-04 -0.254 0.0723 0.731 cMono_IL1B L2
ENSG00000084110 HAL 423812 sc-eQTL 8.37e-01 -0.0168 0.0811 0.731 cMono_IL1B L2
ENSG00000111142 METAP2 946657 sc-eQTL 9.86e-01 -0.00149 0.0841 0.731 cMono_IL1B L2
ENSG00000111144 LTA4H 376657 sc-eQTL 7.95e-01 -0.0228 0.0876 0.731 cMono_IL1B L2
ENSG00000111145 ELK3 225802 sc-eQTL 4.26e-01 -0.0538 0.0674 0.731 cMono_IL1B L2
ENSG00000139343 SNRPF 561249 sc-eQTL 1.85e-01 -0.0922 0.0694 0.731 cMono_IL1B L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 3.09e-01 -0.0976 0.0957 0.731 cMono_IL1B L2
ENSG00000257715 AC007298.1 394854 sc-eQTL 6.65e-01 0.0388 0.0895 0.731 cMono_IL1B L2
ENSG00000059758 CDK17 19697 sc-eQTL 1.30e-01 -0.129 0.0848 0.731 cMono_S100A L2
ENSG00000084110 HAL 423812 sc-eQTL 6.26e-01 0.0467 0.0956 0.731 cMono_S100A L2
ENSG00000111142 METAP2 946657 sc-eQTL 7.41e-01 0.0321 0.0968 0.731 cMono_S100A L2
ENSG00000111144 LTA4H 376657 sc-eQTL 8.47e-01 0.0184 0.0956 0.731 cMono_S100A L2
ENSG00000111145 ELK3 225802 sc-eQTL 8.36e-02 0.134 0.0773 0.731 cMono_S100A L2
ENSG00000139343 SNRPF 561249 sc-eQTL 5.01e-01 -0.0518 0.0769 0.731 cMono_S100A L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 1.39e-01 -0.154 0.103 0.731 cMono_S100A L2
ENSG00000257715 AC007298.1 394854 sc-eQTL 5.22e-01 0.0626 0.0977 0.731 cMono_S100A L2
ENSG00000059758 CDK17 19697 sc-eQTL 3.84e-01 0.0699 0.08 0.709 gdT L2
ENSG00000074527 NTN4 629025 sc-eQTL 7.22e-01 -0.0328 0.092 0.709 gdT L2
ENSG00000111142 METAP2 946657 sc-eQTL 7.05e-01 0.0437 0.115 0.709 gdT L2
ENSG00000111144 LTA4H 376657 sc-eQTL 8.81e-01 -0.018 0.12 0.709 gdT L2
ENSG00000111145 ELK3 225802 sc-eQTL 1.92e-01 0.145 0.11 0.709 gdT L2
ENSG00000139343 SNRPF 561249 sc-eQTL 4.49e-01 0.0812 0.107 0.709 gdT L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 3.77e-01 -0.105 0.118 0.709 gdT L2
ENSG00000188596 CFAP54 -69394 sc-eQTL 8.09e-02 0.18 0.103 0.709 gdT L2
ENSG00000059758 CDK17 19697 sc-eQTL 7.50e-01 -0.0303 0.0951 0.733 intMono L2
ENSG00000084110 HAL 423812 sc-eQTL 3.67e-01 -0.0868 0.096 0.733 intMono L2
ENSG00000111142 METAP2 946657 sc-eQTL 7.17e-02 -0.196 0.108 0.733 intMono L2
ENSG00000111144 LTA4H 376657 sc-eQTL 6.70e-01 0.0421 0.0986 0.733 intMono L2
ENSG00000111145 ELK3 225802 sc-eQTL 2.50e-01 0.101 0.0876 0.733 intMono L2
ENSG00000139343 SNRPF 561249 sc-eQTL 3.20e-01 -0.0935 0.0937 0.733 intMono L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 6.00e-01 0.0512 0.0976 0.733 intMono L2
ENSG00000257715 AC007298.1 394854 sc-eQTL 7.80e-01 0.0275 0.0982 0.733 intMono L2
ENSG00000059758 CDK17 19697 sc-eQTL 6.76e-01 0.0321 0.0767 0.733 ncMono L2
ENSG00000084110 HAL 423812 sc-eQTL 7.98e-02 -0.15 0.085 0.733 ncMono L2
ENSG00000111142 METAP2 946657 sc-eQTL 1.81e-01 -0.138 0.103 0.733 ncMono L2
ENSG00000111144 LTA4H 376657 sc-eQTL 9.76e-01 -0.00286 0.0955 0.733 ncMono L2
ENSG00000111145 ELK3 225802 sc-eQTL 4.87e-01 0.057 0.0819 0.733 ncMono L2
ENSG00000139343 SNRPF 561249 sc-eQTL 4.76e-01 0.0598 0.0836 0.733 ncMono L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 2.39e-01 -0.105 0.0886 0.733 ncMono L2
ENSG00000257715 AC007298.1 394854 sc-eQTL 2.72e-01 -0.112 0.101 0.733 ncMono L2
ENSG00000059758 CDK17 19697 sc-eQTL 9.94e-02 -0.164 0.0988 0.734 pDC L2
ENSG00000084110 HAL 423812 sc-eQTL 8.27e-01 -0.0184 0.0841 0.734 pDC L2
ENSG00000111142 METAP2 946657 sc-eQTL 2.49e-01 -0.131 0.113 0.734 pDC L2
ENSG00000111144 LTA4H 376657 sc-eQTL 5.80e-01 -0.0521 0.0941 0.734 pDC L2
ENSG00000111145 ELK3 225802 sc-eQTL 6.70e-01 0.0491 0.115 0.734 pDC L2
ENSG00000139343 SNRPF 561249 sc-eQTL 7.56e-01 -0.0312 0.101 0.734 pDC L2
ENSG00000139350 NEDD1 -487046 sc-eQTL 9.10e-01 0.0126 0.111 0.734 pDC L2
ENSG00000257715 AC007298.1 394854 sc-eQTL 1.94e-01 -0.123 0.0946 0.734 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 19697 sc-eQTL 3.38e-01 -0.0638 0.0664 0.731 B_Memory LOneK1K
ENSG00000111142 METAP2 946657 sc-eQTL 8.77e-01 0.0143 0.0925 0.731 B_Memory LOneK1K
ENSG00000111144 LTA4H 376657 sc-eQTL 6.21e-01 -0.0342 0.0691 0.731 B_Memory LOneK1K
ENSG00000111145 ELK3 225802 sc-eQTL 9.33e-01 0.00665 0.079 0.731 B_Memory LOneK1K
ENSG00000136014 USP44 868701 sc-eQTL 5.07e-02 -0.192 0.0975 0.731 B_Memory LOneK1K
ENSG00000139343 SNRPF 561249 sc-eQTL 6.34e-01 0.0365 0.0765 0.731 B_Memory LOneK1K
ENSG00000139350 NEDD1 -487046 sc-eQTL 8.48e-01 -0.0192 0.1 0.731 B_Memory LOneK1K
ENSG00000059758 CDK17 19697 sc-eQTL 8.83e-01 -0.00845 0.0575 0.731 B_Naive LOneK1K
ENSG00000111142 METAP2 946657 sc-eQTL 5.69e-01 0.0444 0.0778 0.731 B_Naive LOneK1K
ENSG00000111144 LTA4H 376657 sc-eQTL 4.30e-01 -0.051 0.0645 0.731 B_Naive LOneK1K
ENSG00000111145 ELK3 225802 sc-eQTL 3.95e-01 -0.0625 0.0734 0.731 B_Naive LOneK1K
ENSG00000136014 USP44 868701 sc-eQTL 4.33e-02 -0.181 0.089 0.731 B_Naive LOneK1K
ENSG00000139343 SNRPF 561249 sc-eQTL 5.50e-01 -0.0443 0.0739 0.731 B_Naive LOneK1K
ENSG00000139350 NEDD1 -487046 sc-eQTL 8.81e-01 0.0147 0.0979 0.731 B_Naive LOneK1K
ENSG00000059758 CDK17 19697 sc-eQTL 7.72e-04 -0.225 0.0661 0.731 CD14_Mono LOneK1K
ENSG00000084110 HAL 423812 sc-eQTL 9.73e-01 0.00281 0.0822 0.731 CD14_Mono LOneK1K
ENSG00000111142 METAP2 946657 sc-eQTL 9.58e-01 -0.00411 0.0774 0.731 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 376657 sc-eQTL 9.83e-01 0.00197 0.0902 0.731 CD14_Mono LOneK1K
ENSG00000111145 ELK3 225802 sc-eQTL 6.59e-01 0.0288 0.0652 0.731 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 561249 sc-eQTL 2.76e-01 -0.0685 0.0627 0.731 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -487046 sc-eQTL 1.38e-01 -0.146 0.0982 0.731 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 394854 sc-eQTL 5.91e-01 0.0491 0.0913 0.731 CD14_Mono LOneK1K
ENSG00000059758 CDK17 19697 sc-eQTL 8.91e-01 0.00962 0.07 0.733 CD16_Mono LOneK1K
ENSG00000084110 HAL 423812 sc-eQTL 1.76e-01 -0.112 0.0824 0.733 CD16_Mono LOneK1K
ENSG00000111142 METAP2 946657 sc-eQTL 2.27e-01 -0.113 0.0936 0.733 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 376657 sc-eQTL 9.05e-01 0.0109 0.0917 0.733 CD16_Mono LOneK1K
ENSG00000111145 ELK3 225802 sc-eQTL 3.54e-01 0.0629 0.0677 0.733 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 561249 sc-eQTL 5.55e-01 0.0414 0.0699 0.733 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -487046 sc-eQTL 2.83e-01 -0.0965 0.0895 0.733 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 394854 sc-eQTL 9.65e-01 -0.00416 0.095 0.733 CD16_Mono LOneK1K
ENSG00000059758 CDK17 19697 sc-eQTL 1.55e-01 0.0686 0.0481 0.733 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 946657 sc-eQTL 7.38e-01 0.0246 0.0735 0.733 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 376657 sc-eQTL 1.58e-02 0.202 0.0829 0.733 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 225802 sc-eQTL 9.84e-01 -0.00158 0.0769 0.733 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 561249 sc-eQTL 3.27e-02 -0.14 0.0651 0.733 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -487046 sc-eQTL 2.57e-01 -0.093 0.0818 0.733 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000188596 CFAP54 -69398 eQTL 0.000183 -0.0814 0.0217 0.00102 0.0 0.274

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000139343 \N 561249 3.71e-07 1.59e-07 6.42e-08 2.27e-07 1.05e-07 8.37e-08 1.9e-07 5.85e-08 1.44e-07 8.53e-08 1.61e-07 1.05e-07 2.13e-07 8.55e-08 5.62e-08 7.89e-08 4.24e-08 1.77e-07 7.42e-08 6.02e-08 1.22e-07 1.39e-07 1.58e-07 3.4e-08 2.28e-07 1.26e-07 1.22e-07 1.12e-07 1.34e-07 1.05e-07 1.14e-07 3.93e-08 3.38e-08 9.72e-08 5.16e-08 3.18e-08 3.91e-08 8.68e-08 6.41e-08 4.24e-08 5.13e-08 2e-07 2.62e-08 1.05e-08 4.36e-08 8.76e-09 9.96e-08 2.13e-09 4.61e-08
ENSG00000188596 CFAP54 -69398 5.07e-06 5.79e-06 8.35e-07 3.21e-06 1.33e-06 1.54e-06 5.37e-06 1.09e-06 4.91e-06 2.81e-06 6.7e-06 3.27e-06 9.25e-06 2.24e-06 1.11e-06 3.83e-06 1.82e-06 3.69e-06 1.61e-06 1.13e-06 2.9e-06 4.91e-06 4.13e-06 1.4e-06 8.25e-06 1.62e-06 2.42e-06 1.77e-06 4.44e-06 5.03e-06 2.59e-06 3.98e-07 7.92e-07 1.52e-06 2.05e-06 1.18e-06 9.27e-07 5.45e-07 9.31e-07 6.06e-07 2.14e-07 8.34e-06 4.73e-07 1.89e-07 3.46e-07 9.16e-07 7.75e-07 4.25e-07 3.74e-07
ENSG00000257878 \N 423656 8.35e-07 3.77e-07 8.99e-08 3.48e-07 9.93e-08 1.5e-07 3.57e-07 7.65e-08 2.53e-07 1.65e-07 3.92e-07 1.57e-07 5.09e-07 1.1e-07 1.26e-07 1.33e-07 6.81e-08 3.02e-07 1.56e-07 9.17e-08 1.39e-07 2.3e-07 2.2e-07 6.52e-08 5.75e-07 1.94e-07 1.97e-07 1.85e-07 1.98e-07 2.75e-07 1.93e-07 5.32e-08 4.93e-08 1.23e-07 2.7e-07 6.18e-08 7.74e-08 6.11e-08 4.72e-08 7.77e-08 5.71e-08 5.29e-07 4.71e-08 1.25e-08 1.08e-07 1.48e-08 9.26e-08 3.04e-09 5.65e-08