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Genes within 1Mb (chr12:96420129:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 19649 sc-eQTL 7.63e-04 -0.19 0.0555 0.803 B L1
ENSG00000111142 METAP2 946609 sc-eQTL 9.39e-01 -0.00617 0.0807 0.803 B L1
ENSG00000111144 LTA4H 376609 sc-eQTL 9.11e-01 -0.00791 0.0708 0.803 B L1
ENSG00000111145 ELK3 225754 sc-eQTL 3.37e-01 -0.0724 0.0753 0.803 B L1
ENSG00000136014 USP44 868653 sc-eQTL 4.34e-03 -0.263 0.0912 0.803 B L1
ENSG00000139343 SNRPF 561201 sc-eQTL 1.88e-01 -0.0901 0.0682 0.803 B L1
ENSG00000139350 NEDD1 -487094 sc-eQTL 9.61e-01 -0.00488 0.1 0.803 B L1
ENSG00000059758 CDK17 19649 sc-eQTL 5.16e-01 -0.03 0.0461 0.803 CD4T L1
ENSG00000111142 METAP2 946609 sc-eQTL 7.72e-01 -0.0186 0.0643 0.803 CD4T L1
ENSG00000111144 LTA4H 376609 sc-eQTL 9.93e-01 -0.000594 0.0634 0.803 CD4T L1
ENSG00000111145 ELK3 225754 sc-eQTL 3.83e-01 -0.0598 0.0685 0.803 CD4T L1
ENSG00000136014 USP44 868653 sc-eQTL 2.32e-01 0.117 0.0976 0.803 CD4T L1
ENSG00000139343 SNRPF 561201 sc-eQTL 4.52e-01 -0.0451 0.0599 0.803 CD4T L1
ENSG00000139350 NEDD1 -487094 sc-eQTL 7.16e-02 0.133 0.0733 0.803 CD4T L1
ENSG00000059758 CDK17 19649 sc-eQTL 7.57e-02 -0.0843 0.0472 0.803 CD8T L1
ENSG00000111142 METAP2 946609 sc-eQTL 1.72e-01 0.105 0.0764 0.803 CD8T L1
ENSG00000111144 LTA4H 376609 sc-eQTL 6.59e-01 0.0226 0.0511 0.803 CD8T L1
ENSG00000111145 ELK3 225754 sc-eQTL 3.92e-02 -0.158 0.0761 0.803 CD8T L1
ENSG00000136014 USP44 868653 sc-eQTL 9.45e-01 0.00605 0.0874 0.803 CD8T L1
ENSG00000139343 SNRPF 561201 sc-eQTL 4.48e-01 0.0479 0.0629 0.803 CD8T L1
ENSG00000139350 NEDD1 -487094 sc-eQTL 8.88e-01 0.0118 0.0837 0.803 CD8T L1
ENSG00000059758 CDK17 19649 sc-eQTL 1.81e-02 -0.209 0.0879 0.8 DC L1
ENSG00000084110 HAL 423764 sc-eQTL 7.93e-01 -0.0266 0.101 0.8 DC L1
ENSG00000111142 METAP2 946609 sc-eQTL 9.12e-01 -0.0124 0.112 0.8 DC L1
ENSG00000111144 LTA4H 376609 sc-eQTL 3.20e-01 -0.0824 0.0827 0.8 DC L1
ENSG00000111145 ELK3 225754 sc-eQTL 7.88e-01 -0.0273 0.102 0.8 DC L1
ENSG00000139343 SNRPF 561201 sc-eQTL 9.63e-01 -0.00394 0.0845 0.8 DC L1
ENSG00000139350 NEDD1 -487094 sc-eQTL 7.65e-01 -0.0324 0.108 0.8 DC L1
ENSG00000257715 AC007298.1 394806 sc-eQTL 1.08e-01 -0.157 0.0973 0.8 DC L1
ENSG00000059758 CDK17 19649 sc-eQTL 8.00e-02 -0.126 0.0714 0.803 Mono L1
ENSG00000084110 HAL 423764 sc-eQTL 4.97e-01 -0.0615 0.0905 0.803 Mono L1
ENSG00000111142 METAP2 946609 sc-eQTL 5.28e-01 -0.0495 0.0782 0.803 Mono L1
ENSG00000111144 LTA4H 376609 sc-eQTL 8.64e-01 -0.0175 0.102 0.803 Mono L1
ENSG00000111145 ELK3 225754 sc-eQTL 8.43e-01 -0.0136 0.0687 0.803 Mono L1
ENSG00000139343 SNRPF 561201 sc-eQTL 5.79e-01 -0.0359 0.0647 0.803 Mono L1
ENSG00000139350 NEDD1 -487094 sc-eQTL 1.76e-02 -0.235 0.0981 0.803 Mono L1
ENSG00000257715 AC007298.1 394806 sc-eQTL 5.35e-01 0.0598 0.0963 0.803 Mono L1
ENSG00000059758 CDK17 19649 sc-eQTL 2.37e-01 0.0622 0.0524 0.803 NK L1
ENSG00000111142 METAP2 946609 sc-eQTL 4.78e-01 0.0553 0.0778 0.803 NK L1
ENSG00000111144 LTA4H 376609 sc-eQTL 1.20e-01 0.139 0.0888 0.803 NK L1
ENSG00000111145 ELK3 225754 sc-eQTL 7.72e-01 0.0246 0.0847 0.803 NK L1
ENSG00000139343 SNRPF 561201 sc-eQTL 4.57e-01 -0.0523 0.0701 0.803 NK L1
ENSG00000139350 NEDD1 -487094 sc-eQTL 1.50e-01 -0.128 0.0885 0.803 NK L1
ENSG00000059758 CDK17 19649 sc-eQTL 2.60e-01 0.0502 0.0445 0.803 Other_T L1
ENSG00000074527 NTN4 628977 sc-eQTL 8.26e-02 -0.143 0.0819 0.803 Other_T L1
ENSG00000111142 METAP2 946609 sc-eQTL 7.40e-01 0.0283 0.0851 0.803 Other_T L1
ENSG00000111144 LTA4H 376609 sc-eQTL 9.31e-01 -0.00813 0.0932 0.803 Other_T L1
ENSG00000111145 ELK3 225754 sc-eQTL 4.94e-01 0.0497 0.0726 0.803 Other_T L1
ENSG00000139343 SNRPF 561201 sc-eQTL 5.29e-01 -0.0426 0.0675 0.803 Other_T L1
ENSG00000139350 NEDD1 -487094 sc-eQTL 1.54e-01 -0.147 0.102 0.803 Other_T L1
ENSG00000188596 CFAP54 -69442 sc-eQTL 4.48e-01 0.0809 0.106 0.803 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 19649 sc-eQTL 9.63e-01 -0.00473 0.103 0.806 B_Activated L2
ENSG00000111142 METAP2 946609 sc-eQTL 2.49e-01 0.149 0.129 0.806 B_Activated L2
ENSG00000111144 LTA4H 376609 sc-eQTL 7.76e-01 0.0331 0.116 0.806 B_Activated L2
ENSG00000111145 ELK3 225754 sc-eQTL 6.60e-01 0.0542 0.123 0.806 B_Activated L2
ENSG00000136014 USP44 868653 sc-eQTL 2.14e-01 -0.117 0.0941 0.806 B_Activated L2
ENSG00000139343 SNRPF 561201 sc-eQTL 1.34e-01 0.173 0.115 0.806 B_Activated L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 7.13e-01 0.0447 0.121 0.806 B_Activated L2
ENSG00000059758 CDK17 19649 sc-eQTL 6.43e-02 -0.164 0.0881 0.803 B_Intermediate L2
ENSG00000111142 METAP2 946609 sc-eQTL 4.80e-01 -0.0719 0.102 0.803 B_Intermediate L2
ENSG00000111144 LTA4H 376609 sc-eQTL 8.17e-01 -0.02 0.086 0.803 B_Intermediate L2
ENSG00000111145 ELK3 225754 sc-eQTL 3.33e-01 -0.0939 0.0968 0.803 B_Intermediate L2
ENSG00000136014 USP44 868653 sc-eQTL 5.74e-02 -0.217 0.113 0.803 B_Intermediate L2
ENSG00000139343 SNRPF 561201 sc-eQTL 6.02e-01 -0.0505 0.0966 0.803 B_Intermediate L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 1.65e-01 -0.157 0.113 0.803 B_Intermediate L2
ENSG00000059758 CDK17 19649 sc-eQTL 1.29e-01 -0.129 0.0846 0.806 B_Memory L2
ENSG00000111142 METAP2 946609 sc-eQTL 3.69e-01 0.0995 0.11 0.806 B_Memory L2
ENSG00000111144 LTA4H 376609 sc-eQTL 6.29e-01 -0.0475 0.0981 0.806 B_Memory L2
ENSG00000111145 ELK3 225754 sc-eQTL 4.13e-01 0.0791 0.0964 0.806 B_Memory L2
ENSG00000136014 USP44 868653 sc-eQTL 2.96e-01 -0.111 0.106 0.806 B_Memory L2
ENSG00000139343 SNRPF 561201 sc-eQTL 2.52e-01 -0.117 0.102 0.806 B_Memory L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 1.38e-01 0.168 0.113 0.806 B_Memory L2
ENSG00000059758 CDK17 19649 sc-eQTL 5.13e-01 -0.0472 0.0719 0.803 B_Naive1 L2
ENSG00000111142 METAP2 946609 sc-eQTL 7.16e-01 0.0339 0.0931 0.803 B_Naive1 L2
ENSG00000111144 LTA4H 376609 sc-eQTL 4.59e-01 -0.0559 0.0753 0.803 B_Naive1 L2
ENSG00000111145 ELK3 225754 sc-eQTL 3.45e-01 -0.0841 0.0889 0.803 B_Naive1 L2
ENSG00000136014 USP44 868653 sc-eQTL 4.38e-01 -0.0869 0.112 0.803 B_Naive1 L2
ENSG00000139343 SNRPF 561201 sc-eQTL 2.79e-01 0.0939 0.0864 0.803 B_Naive1 L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 5.16e-01 0.0723 0.111 0.803 B_Naive1 L2
ENSG00000059758 CDK17 19649 sc-eQTL 2.08e-02 -0.206 0.0886 0.805 B_Naive2 L2
ENSG00000111142 METAP2 946609 sc-eQTL 5.23e-01 0.0693 0.108 0.805 B_Naive2 L2
ENSG00000111144 LTA4H 376609 sc-eQTL 3.51e-01 -0.0792 0.0848 0.805 B_Naive2 L2
ENSG00000111145 ELK3 225754 sc-eQTL 6.39e-01 -0.0471 0.1 0.805 B_Naive2 L2
ENSG00000136014 USP44 868653 sc-eQTL 1.23e-01 -0.167 0.108 0.805 B_Naive2 L2
ENSG00000139343 SNRPF 561201 sc-eQTL 2.25e-01 -0.121 0.0992 0.805 B_Naive2 L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 3.45e-01 -0.112 0.118 0.805 B_Naive2 L2
ENSG00000059758 CDK17 19649 sc-eQTL 1.26e-01 -0.126 0.0818 0.802 CD4_CTL L2
ENSG00000111142 METAP2 946609 sc-eQTL 8.76e-01 -0.0185 0.118 0.802 CD4_CTL L2
ENSG00000111144 LTA4H 376609 sc-eQTL 5.72e-01 -0.0657 0.116 0.802 CD4_CTL L2
ENSG00000111145 ELK3 225754 sc-eQTL 2.60e-02 0.26 0.116 0.802 CD4_CTL L2
ENSG00000136014 USP44 868653 sc-eQTL 4.89e-01 -0.0649 0.0936 0.802 CD4_CTL L2
ENSG00000139343 SNRPF 561201 sc-eQTL 4.24e-01 -0.0816 0.102 0.802 CD4_CTL L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 1.87e-02 -0.276 0.116 0.802 CD4_CTL L2
ENSG00000059758 CDK17 19649 sc-eQTL 2.56e-01 -0.0575 0.0505 0.803 CD4_Naive L2
ENSG00000111142 METAP2 946609 sc-eQTL 9.61e-01 0.00354 0.073 0.803 CD4_Naive L2
ENSG00000111144 LTA4H 376609 sc-eQTL 6.09e-01 -0.0374 0.0732 0.803 CD4_Naive L2
ENSG00000111145 ELK3 225754 sc-eQTL 2.61e-01 -0.0822 0.073 0.803 CD4_Naive L2
ENSG00000136014 USP44 868653 sc-eQTL 1.20e-01 0.159 0.102 0.803 CD4_Naive L2
ENSG00000139343 SNRPF 561201 sc-eQTL 5.13e-01 -0.0426 0.065 0.803 CD4_Naive L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 2.74e-01 0.0876 0.0799 0.803 CD4_Naive L2
ENSG00000059758 CDK17 19649 sc-eQTL 8.21e-01 -0.0112 0.0493 0.803 CD4_TCM L2
ENSG00000111142 METAP2 946609 sc-eQTL 7.44e-01 -0.0275 0.084 0.803 CD4_TCM L2
ENSG00000111144 LTA4H 376609 sc-eQTL 3.21e-01 0.0831 0.0835 0.803 CD4_TCM L2
ENSG00000111145 ELK3 225754 sc-eQTL 6.36e-01 -0.039 0.0823 0.803 CD4_TCM L2
ENSG00000136014 USP44 868653 sc-eQTL 7.71e-01 0.0332 0.114 0.803 CD4_TCM L2
ENSG00000139343 SNRPF 561201 sc-eQTL 8.55e-01 -0.0124 0.0676 0.803 CD4_TCM L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 7.10e-02 0.166 0.0916 0.803 CD4_TCM L2
ENSG00000059758 CDK17 19649 sc-eQTL 8.67e-01 0.0103 0.0613 0.803 CD4_TEM L2
ENSG00000111142 METAP2 946609 sc-eQTL 7.75e-01 -0.0294 0.102 0.803 CD4_TEM L2
ENSG00000111144 LTA4H 376609 sc-eQTL 4.96e-01 0.0644 0.0945 0.803 CD4_TEM L2
ENSG00000111145 ELK3 225754 sc-eQTL 4.30e-01 -0.0694 0.0878 0.803 CD4_TEM L2
ENSG00000136014 USP44 868653 sc-eQTL 8.97e-01 0.014 0.108 0.803 CD4_TEM L2
ENSG00000139343 SNRPF 561201 sc-eQTL 6.66e-01 -0.0397 0.092 0.803 CD4_TEM L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 9.21e-01 -0.0108 0.109 0.803 CD4_TEM L2
ENSG00000059758 CDK17 19649 sc-eQTL 4.47e-01 -0.0464 0.0609 0.803 CD8_CTL L2
ENSG00000111142 METAP2 946609 sc-eQTL 6.46e-02 0.194 0.105 0.803 CD8_CTL L2
ENSG00000111144 LTA4H 376609 sc-eQTL 5.77e-01 0.0615 0.11 0.803 CD8_CTL L2
ENSG00000111145 ELK3 225754 sc-eQTL 3.87e-01 0.0867 0.1 0.803 CD8_CTL L2
ENSG00000136014 USP44 868653 sc-eQTL 9.25e-01 0.0106 0.112 0.803 CD8_CTL L2
ENSG00000139343 SNRPF 561201 sc-eQTL 9.44e-01 -0.00647 0.0921 0.803 CD8_CTL L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 5.63e-01 -0.0598 0.103 0.803 CD8_CTL L2
ENSG00000059758 CDK17 19649 sc-eQTL 7.38e-03 -0.188 0.0696 0.803 CD8_Naive L2
ENSG00000111142 METAP2 946609 sc-eQTL 7.15e-01 0.0344 0.094 0.803 CD8_Naive L2
ENSG00000111144 LTA4H 376609 sc-eQTL 4.56e-01 0.0632 0.0847 0.803 CD8_Naive L2
ENSG00000111145 ELK3 225754 sc-eQTL 2.16e-02 -0.205 0.0886 0.803 CD8_Naive L2
ENSG00000136014 USP44 868653 sc-eQTL 6.40e-01 0.0441 0.0942 0.803 CD8_Naive L2
ENSG00000139343 SNRPF 561201 sc-eQTL 4.33e-01 0.0632 0.0805 0.803 CD8_Naive L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 3.09e-01 0.0978 0.0958 0.803 CD8_Naive L2
ENSG00000059758 CDK17 19649 sc-eQTL 5.82e-01 0.0419 0.0761 0.796 CD8_TCM L2
ENSG00000111142 METAP2 946609 sc-eQTL 9.08e-01 -0.0131 0.114 0.796 CD8_TCM L2
ENSG00000111144 LTA4H 376609 sc-eQTL 9.20e-01 0.0112 0.112 0.796 CD8_TCM L2
ENSG00000111145 ELK3 225754 sc-eQTL 3.32e-02 -0.201 0.0936 0.796 CD8_TCM L2
ENSG00000136014 USP44 868653 sc-eQTL 8.40e-01 0.0207 0.103 0.796 CD8_TCM L2
ENSG00000139343 SNRPF 561201 sc-eQTL 8.39e-01 -0.0222 0.109 0.796 CD8_TCM L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 3.27e-01 -0.105 0.107 0.796 CD8_TCM L2
ENSG00000059758 CDK17 19649 sc-eQTL 8.56e-01 -0.0179 0.0985 0.808 CD8_TEM L2
ENSG00000111142 METAP2 946609 sc-eQTL 5.90e-03 0.316 0.113 0.808 CD8_TEM L2
ENSG00000111144 LTA4H 376609 sc-eQTL 8.16e-01 0.0281 0.121 0.808 CD8_TEM L2
ENSG00000111145 ELK3 225754 sc-eQTL 3.73e-01 0.106 0.118 0.808 CD8_TEM L2
ENSG00000136014 USP44 868653 sc-eQTL 5.61e-02 -0.192 0.1 0.808 CD8_TEM L2
ENSG00000139343 SNRPF 561201 sc-eQTL 1.60e-01 0.155 0.11 0.808 CD8_TEM L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 6.70e-01 -0.0511 0.12 0.808 CD8_TEM L2
ENSG00000059758 CDK17 19649 sc-eQTL 9.11e-01 -0.00719 0.0641 0.803 MAIT L2
ENSG00000074527 NTN4 628977 sc-eQTL 1.58e-01 -0.122 0.086 0.803 MAIT L2
ENSG00000111142 METAP2 946609 sc-eQTL 5.40e-01 0.0667 0.109 0.803 MAIT L2
ENSG00000111144 LTA4H 376609 sc-eQTL 7.31e-01 0.0341 0.0991 0.803 MAIT L2
ENSG00000111145 ELK3 225754 sc-eQTL 9.12e-01 0.00923 0.0832 0.803 MAIT L2
ENSG00000139343 SNRPF 561201 sc-eQTL 5.13e-01 -0.0631 0.0963 0.803 MAIT L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 4.57e-01 -0.0805 0.108 0.803 MAIT L2
ENSG00000188596 CFAP54 -69442 sc-eQTL 4.86e-01 -0.0747 0.107 0.803 MAIT L2
ENSG00000059758 CDK17 19649 sc-eQTL 7.79e-03 0.178 0.0664 0.8 NK_CD56bright L2
ENSG00000111142 METAP2 946609 sc-eQTL 8.24e-01 -0.0255 0.114 0.8 NK_CD56bright L2
ENSG00000111144 LTA4H 376609 sc-eQTL 4.81e-01 0.0705 0.0999 0.8 NK_CD56bright L2
ENSG00000111145 ELK3 225754 sc-eQTL 2.94e-01 0.111 0.106 0.8 NK_CD56bright L2
ENSG00000139343 SNRPF 561201 sc-eQTL 8.98e-01 -0.0142 0.111 0.8 NK_CD56bright L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 7.24e-01 -0.0396 0.112 0.8 NK_CD56bright L2
ENSG00000059758 CDK17 19649 sc-eQTL 4.72e-02 0.112 0.0562 0.804 NK_CD56dim L2
ENSG00000111142 METAP2 946609 sc-eQTL 1.51e-01 0.143 0.099 0.804 NK_CD56dim L2
ENSG00000111144 LTA4H 376609 sc-eQTL 1.08e-01 0.165 0.102 0.804 NK_CD56dim L2
ENSG00000111145 ELK3 225754 sc-eQTL 3.24e-01 -0.0896 0.0906 0.804 NK_CD56dim L2
ENSG00000139343 SNRPF 561201 sc-eQTL 1.68e-01 -0.119 0.086 0.804 NK_CD56dim L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 4.39e-01 -0.077 0.0993 0.804 NK_CD56dim L2
ENSG00000059758 CDK17 19649 sc-eQTL 2.10e-01 -0.112 0.0889 0.801 NK_HLA L2
ENSG00000111142 METAP2 946609 sc-eQTL 9.13e-01 -0.0123 0.112 0.801 NK_HLA L2
ENSG00000111144 LTA4H 376609 sc-eQTL 5.28e-01 -0.074 0.117 0.801 NK_HLA L2
ENSG00000111145 ELK3 225754 sc-eQTL 7.52e-01 0.0343 0.109 0.801 NK_HLA L2
ENSG00000139343 SNRPF 561201 sc-eQTL 8.96e-01 -0.0147 0.113 0.801 NK_HLA L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 4.87e-02 -0.21 0.106 0.801 NK_HLA L2
ENSG00000059758 CDK17 19649 sc-eQTL 8.30e-01 -0.0133 0.062 0.804 NK_cytokine L2
ENSG00000111142 METAP2 946609 sc-eQTL 5.96e-01 0.0547 0.103 0.804 NK_cytokine L2
ENSG00000111144 LTA4H 376609 sc-eQTL 3.80e-01 0.092 0.105 0.804 NK_cytokine L2
ENSG00000111145 ELK3 225754 sc-eQTL 2.11e-01 0.126 0.1 0.804 NK_cytokine L2
ENSG00000139343 SNRPF 561201 sc-eQTL 2.47e-01 0.0983 0.0847 0.804 NK_cytokine L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 2.47e-01 -0.122 0.105 0.804 NK_cytokine L2
ENSG00000059758 CDK17 19649 sc-eQTL 6.95e-02 -0.234 0.128 0.826 PB L2
ENSG00000111142 METAP2 946609 sc-eQTL 2.56e-01 0.172 0.151 0.826 PB L2
ENSG00000111144 LTA4H 376609 sc-eQTL 3.63e-01 0.104 0.114 0.826 PB L2
ENSG00000111145 ELK3 225754 sc-eQTL 7.18e-01 0.0531 0.146 0.826 PB L2
ENSG00000136014 USP44 868653 sc-eQTL 8.06e-01 -0.0334 0.136 0.826 PB L2
ENSG00000139343 SNRPF 561201 sc-eQTL 5.40e-01 -0.0876 0.143 0.826 PB L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 1.63e-02 0.404 0.165 0.826 PB L2
ENSG00000059758 CDK17 19649 sc-eQTL 9.45e-01 0.00489 0.0705 0.8 Pro_T L2
ENSG00000074527 NTN4 628977 sc-eQTL 4.70e-01 -0.0572 0.079 0.8 Pro_T L2
ENSG00000111142 METAP2 946609 sc-eQTL 5.42e-01 0.057 0.0934 0.8 Pro_T L2
ENSG00000111144 LTA4H 376609 sc-eQTL 3.55e-01 -0.0861 0.0929 0.8 Pro_T L2
ENSG00000111145 ELK3 225754 sc-eQTL 7.47e-01 -0.0364 0.113 0.8 Pro_T L2
ENSG00000139343 SNRPF 561201 sc-eQTL 9.38e-01 -0.00551 0.071 0.8 Pro_T L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 5.59e-01 -0.0604 0.103 0.8 Pro_T L2
ENSG00000188596 CFAP54 -69442 sc-eQTL 4.24e-01 0.0667 0.0833 0.8 Pro_T L2
ENSG00000059758 CDK17 19649 sc-eQTL 2.08e-01 0.0983 0.0778 0.803 Treg L2
ENSG00000111142 METAP2 946609 sc-eQTL 8.52e-01 -0.0199 0.106 0.803 Treg L2
ENSG00000111144 LTA4H 376609 sc-eQTL 5.36e-01 0.0613 0.0988 0.803 Treg L2
ENSG00000111145 ELK3 225754 sc-eQTL 2.96e-01 -0.0936 0.0893 0.803 Treg L2
ENSG00000136014 USP44 868653 sc-eQTL 3.37e-01 0.0967 0.1 0.803 Treg L2
ENSG00000139343 SNRPF 561201 sc-eQTL 2.07e-01 0.131 0.103 0.803 Treg L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 4.87e-01 0.0805 0.116 0.803 Treg L2
ENSG00000059758 CDK17 19649 sc-eQTL 2.81e-01 -0.101 0.0934 0.8 cDC L2
ENSG00000084110 HAL 423764 sc-eQTL 3.23e-01 0.0963 0.0971 0.8 cDC L2
ENSG00000111142 METAP2 946609 sc-eQTL 9.52e-02 0.196 0.117 0.8 cDC L2
ENSG00000111144 LTA4H 376609 sc-eQTL 9.35e-01 -0.00678 0.0834 0.8 cDC L2
ENSG00000111145 ELK3 225754 sc-eQTL 8.37e-01 0.0227 0.11 0.8 cDC L2
ENSG00000139343 SNRPF 561201 sc-eQTL 3.69e-01 -0.0829 0.092 0.8 cDC L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 3.07e-01 0.115 0.112 0.8 cDC L2
ENSG00000257715 AC007298.1 394806 sc-eQTL 9.59e-01 -0.00489 0.0947 0.8 cDC L2
ENSG00000059758 CDK17 19649 sc-eQTL 2.64e-03 -0.246 0.0807 0.803 cMono_IL1B L2
ENSG00000084110 HAL 423764 sc-eQTL 8.40e-01 -0.0182 0.0899 0.803 cMono_IL1B L2
ENSG00000111142 METAP2 946609 sc-eQTL 5.83e-01 -0.0513 0.0932 0.803 cMono_IL1B L2
ENSG00000111144 LTA4H 376609 sc-eQTL 7.25e-01 -0.0343 0.0971 0.803 cMono_IL1B L2
ENSG00000111145 ELK3 225754 sc-eQTL 7.12e-01 -0.0277 0.0748 0.803 cMono_IL1B L2
ENSG00000139343 SNRPF 561201 sc-eQTL 2.33e-01 -0.092 0.077 0.803 cMono_IL1B L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 7.57e-02 -0.188 0.106 0.803 cMono_IL1B L2
ENSG00000257715 AC007298.1 394806 sc-eQTL 7.44e-01 -0.0325 0.0992 0.803 cMono_IL1B L2
ENSG00000059758 CDK17 19649 sc-eQTL 3.50e-01 -0.0881 0.094 0.803 cMono_S100A L2
ENSG00000084110 HAL 423764 sc-eQTL 7.90e-01 0.0282 0.106 0.803 cMono_S100A L2
ENSG00000111142 METAP2 946609 sc-eQTL 4.54e-01 0.0802 0.107 0.803 cMono_S100A L2
ENSG00000111144 LTA4H 376609 sc-eQTL 7.49e-01 -0.0339 0.106 0.803 cMono_S100A L2
ENSG00000111145 ELK3 225754 sc-eQTL 7.75e-01 0.0246 0.086 0.803 cMono_S100A L2
ENSG00000139343 SNRPF 561201 sc-eQTL 8.88e-01 -0.012 0.085 0.803 cMono_S100A L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 1.27e-01 -0.175 0.114 0.803 cMono_S100A L2
ENSG00000257715 AC007298.1 394806 sc-eQTL 1.91e-01 0.141 0.108 0.803 cMono_S100A L2
ENSG00000059758 CDK17 19649 sc-eQTL 2.99e-01 0.0917 0.0879 0.782 gdT L2
ENSG00000074527 NTN4 628977 sc-eQTL 5.63e-01 0.0587 0.101 0.782 gdT L2
ENSG00000111142 METAP2 946609 sc-eQTL 9.53e-01 0.0075 0.127 0.782 gdT L2
ENSG00000111144 LTA4H 376609 sc-eQTL 8.46e-01 0.0257 0.132 0.782 gdT L2
ENSG00000111145 ELK3 225754 sc-eQTL 2.27e-01 0.148 0.122 0.782 gdT L2
ENSG00000139343 SNRPF 561201 sc-eQTL 5.66e-01 0.0677 0.118 0.782 gdT L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 8.77e-01 0.0201 0.13 0.782 gdT L2
ENSG00000188596 CFAP54 -69442 sc-eQTL 1.22e-03 0.363 0.11 0.782 gdT L2
ENSG00000059758 CDK17 19649 sc-eQTL 3.45e-01 -0.0988 0.104 0.802 intMono L2
ENSG00000084110 HAL 423764 sc-eQTL 2.58e-01 -0.12 0.106 0.802 intMono L2
ENSG00000111142 METAP2 946609 sc-eQTL 1.94e-01 -0.155 0.119 0.802 intMono L2
ENSG00000111144 LTA4H 376609 sc-eQTL 6.81e-01 0.0447 0.109 0.802 intMono L2
ENSG00000111145 ELK3 225754 sc-eQTL 8.78e-01 -0.0149 0.0967 0.802 intMono L2
ENSG00000139343 SNRPF 561201 sc-eQTL 2.93e-01 -0.109 0.103 0.802 intMono L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 7.12e-01 -0.0398 0.107 0.802 intMono L2
ENSG00000257715 AC007298.1 394806 sc-eQTL 7.79e-01 0.0303 0.108 0.802 intMono L2
ENSG00000059758 CDK17 19649 sc-eQTL 6.11e-01 -0.0433 0.0851 0.801 ncMono L2
ENSG00000084110 HAL 423764 sc-eQTL 1.79e-01 -0.128 0.0946 0.801 ncMono L2
ENSG00000111142 METAP2 946609 sc-eQTL 8.56e-01 -0.0209 0.115 0.801 ncMono L2
ENSG00000111144 LTA4H 376609 sc-eQTL 7.17e-01 -0.0385 0.106 0.801 ncMono L2
ENSG00000111145 ELK3 225754 sc-eQTL 9.75e-01 -0.00285 0.091 0.801 ncMono L2
ENSG00000139343 SNRPF 561201 sc-eQTL 1.45e-01 0.135 0.0924 0.801 ncMono L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 1.23e-02 -0.246 0.0971 0.801 ncMono L2
ENSG00000257715 AC007298.1 394806 sc-eQTL 9.41e-01 0.00835 0.113 0.801 ncMono L2
ENSG00000059758 CDK17 19649 sc-eQTL 2.52e-02 -0.245 0.108 0.794 pDC L2
ENSG00000084110 HAL 423764 sc-eQTL 4.80e-01 -0.0658 0.0928 0.794 pDC L2
ENSG00000111142 METAP2 946609 sc-eQTL 9.05e-02 -0.212 0.124 0.794 pDC L2
ENSG00000111144 LTA4H 376609 sc-eQTL 5.49e-01 -0.0625 0.104 0.794 pDC L2
ENSG00000111145 ELK3 225754 sc-eQTL 9.59e-01 -0.00648 0.127 0.794 pDC L2
ENSG00000139343 SNRPF 561201 sc-eQTL 9.55e-01 0.00621 0.111 0.794 pDC L2
ENSG00000139350 NEDD1 -487094 sc-eQTL 8.25e-01 0.0271 0.123 0.794 pDC L2
ENSG00000257715 AC007298.1 394806 sc-eQTL 5.33e-01 -0.0656 0.105 0.794 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 19649 sc-eQTL 1.11e-02 -0.187 0.0729 0.803 B_Memory LOneK1K
ENSG00000111142 METAP2 946609 sc-eQTL 8.22e-01 -0.0232 0.103 0.803 B_Memory LOneK1K
ENSG00000111144 LTA4H 376609 sc-eQTL 7.49e-01 -0.0246 0.0769 0.803 B_Memory LOneK1K
ENSG00000111145 ELK3 225754 sc-eQTL 9.33e-01 0.00742 0.0879 0.803 B_Memory LOneK1K
ENSG00000136014 USP44 868653 sc-eQTL 2.11e-02 -0.251 0.108 0.803 B_Memory LOneK1K
ENSG00000139343 SNRPF 561201 sc-eQTL 2.07e-01 -0.107 0.0849 0.803 B_Memory LOneK1K
ENSG00000139350 NEDD1 -487094 sc-eQTL 4.84e-01 0.0783 0.112 0.803 B_Memory LOneK1K
ENSG00000059758 CDK17 19649 sc-eQTL 8.17e-02 -0.112 0.064 0.803 B_Naive LOneK1K
ENSG00000111142 METAP2 946609 sc-eQTL 4.70e-01 0.063 0.0871 0.803 B_Naive LOneK1K
ENSG00000111144 LTA4H 376609 sc-eQTL 6.09e-01 -0.037 0.0723 0.803 B_Naive LOneK1K
ENSG00000111145 ELK3 225754 sc-eQTL 1.55e-01 -0.117 0.0819 0.803 B_Naive LOneK1K
ENSG00000136014 USP44 868653 sc-eQTL 1.46e-01 -0.146 0.1 0.803 B_Naive LOneK1K
ENSG00000139343 SNRPF 561201 sc-eQTL 8.54e-01 -0.0153 0.0829 0.803 B_Naive LOneK1K
ENSG00000139350 NEDD1 -487094 sc-eQTL 9.20e-01 -0.0111 0.11 0.803 B_Naive LOneK1K
ENSG00000059758 CDK17 19649 sc-eQTL 4.37e-03 -0.211 0.0733 0.803 CD14_Mono LOneK1K
ENSG00000084110 HAL 423764 sc-eQTL 8.31e-01 -0.0193 0.0905 0.803 CD14_Mono LOneK1K
ENSG00000111142 METAP2 946609 sc-eQTL 8.90e-01 -0.0118 0.0852 0.803 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 376609 sc-eQTL 8.67e-01 -0.0167 0.0994 0.803 CD14_Mono LOneK1K
ENSG00000111145 ELK3 225754 sc-eQTL 8.91e-01 0.00983 0.0718 0.803 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 561201 sc-eQTL 4.52e-01 -0.0521 0.0692 0.803 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -487094 sc-eQTL 8.14e-02 -0.189 0.108 0.803 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 394806 sc-eQTL 5.39e-01 0.0619 0.101 0.803 CD14_Mono LOneK1K
ENSG00000059758 CDK17 19649 sc-eQTL 3.77e-01 -0.0681 0.0769 0.804 CD16_Mono LOneK1K
ENSG00000084110 HAL 423764 sc-eQTL 2.29e-01 -0.109 0.0908 0.804 CD16_Mono LOneK1K
ENSG00000111142 METAP2 946609 sc-eQTL 3.38e-01 -0.0991 0.103 0.804 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 376609 sc-eQTL 9.07e-01 -0.0118 0.101 0.804 CD16_Mono LOneK1K
ENSG00000111145 ELK3 225754 sc-eQTL 6.21e-01 -0.037 0.0747 0.804 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 561201 sc-eQTL 7.16e-01 0.0281 0.0771 0.804 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -487094 sc-eQTL 1.76e-02 -0.233 0.0975 0.804 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 394806 sc-eQTL 9.18e-01 0.0108 0.105 0.804 CD16_Mono LOneK1K
ENSG00000059758 CDK17 19649 sc-eQTL 5.68e-01 0.0305 0.0533 0.804 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 946609 sc-eQTL 4.92e-01 0.0557 0.0811 0.804 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 376609 sc-eQTL 2.11e-01 0.116 0.0924 0.804 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 225754 sc-eQTL 7.27e-01 -0.0296 0.0849 0.804 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 561201 sc-eQTL 3.00e-01 -0.0753 0.0724 0.804 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -487094 sc-eQTL 1.29e-01 -0.137 0.0901 0.804 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111145 ELK3 225754 eQTL 0.041 -0.0423 0.0207 0.0 0.0 0.206
ENSG00000139350 NEDD1 -487094 eQTL 7.85e-06 -0.128 0.0285 0.0 0.0 0.206
ENSG00000188596 CFAP54 -69446 eQTL 1.49e-05 -0.104 0.0238 0.00103 0.0 0.206

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000139350 NEDD1 -487094 1.54e-06 1.84e-06 5.82e-07 2.02e-06 4.72e-07 7.41e-07 1.32e-06 3.38e-07 1.7e-06 5.99e-07 2.03e-06 8.48e-07 3.04e-06 1.4e-06 4.52e-07 1.22e-06 1.07e-06 1.1e-06 5.76e-07 5.27e-07 6.35e-07 1.9e-06 1.42e-06 8.41e-07 2.37e-06 7.8e-07 1.04e-06 8.64e-07 1.73e-06 1.39e-06 7.05e-07 2.56e-07 2.85e-07 1.8e-06 9.21e-07 9.73e-07 7.53e-07 4.02e-07 9.94e-07 3.79e-07 2.87e-07 2.23e-06 4.38e-07 1.6e-07 3.75e-07 5.86e-07 2.71e-07 5.52e-07 2.44e-07
ENSG00000188596 CFAP54 -69446 2.31e-05 2.26e-05 4.87e-06 1.35e-05 4.03e-06 1.07e-05 3.35e-05 3.5e-06 2.27e-05 1.19e-05 2.55e-05 1.2e-05 3.66e-05 1.1e-05 5.8e-06 1.48e-05 1e-05 1.77e-05 6.32e-06 5.26e-06 1.01e-05 2.26e-05 2.27e-05 6.73e-06 3.43e-05 5.37e-06 9.99e-06 9.35e-06 2.39e-05 1.73e-05 1.29e-05 1.65e-06 2.29e-06 5.98e-06 9.49e-06 5.11e-06 2.62e-06 2.79e-06 3.52e-06 3.15e-06 1.69e-06 2.84e-05 2.98e-06 2.36e-07 2.07e-06 3.36e-06 3.71e-06 1.5e-06 1.51e-06