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Genes within 1Mb (chr12:96419695:T:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 19215 sc-eQTL 1.09e-01 -0.0779 0.0484 0.69 B L1
ENSG00000111142 METAP2 946175 sc-eQTL 4.68e-01 0.05 0.0688 0.69 B L1
ENSG00000111144 LTA4H 376175 sc-eQTL 7.75e-01 -0.0173 0.0605 0.69 B L1
ENSG00000111145 ELK3 225320 sc-eQTL 3.58e-01 -0.0592 0.0642 0.69 B L1
ENSG00000136014 USP44 868219 sc-eQTL 8.11e-02 -0.138 0.0788 0.69 B L1
ENSG00000139343 SNRPF 560767 sc-eQTL 1.20e-01 -0.0908 0.0581 0.69 B L1
ENSG00000139350 NEDD1 -487528 sc-eQTL 4.93e-01 0.0585 0.0853 0.69 B L1
ENSG00000059758 CDK17 19215 sc-eQTL 7.31e-01 -0.0138 0.0401 0.69 CD4T L1
ENSG00000111142 METAP2 946175 sc-eQTL 8.97e-01 0.00729 0.056 0.69 CD4T L1
ENSG00000111144 LTA4H 376175 sc-eQTL 4.47e-01 -0.0419 0.0551 0.69 CD4T L1
ENSG00000111145 ELK3 225320 sc-eQTL 7.76e-01 0.017 0.0597 0.69 CD4T L1
ENSG00000136014 USP44 868219 sc-eQTL 9.53e-01 0.00504 0.0852 0.69 CD4T L1
ENSG00000139343 SNRPF 560767 sc-eQTL 6.73e-01 -0.022 0.0522 0.69 CD4T L1
ENSG00000139350 NEDD1 -487528 sc-eQTL 5.38e-01 0.0396 0.0642 0.69 CD4T L1
ENSG00000059758 CDK17 19215 sc-eQTL 2.43e-01 -0.0481 0.0411 0.69 CD8T L1
ENSG00000111142 METAP2 946175 sc-eQTL 4.11e-01 0.0547 0.0664 0.69 CD8T L1
ENSG00000111144 LTA4H 376175 sc-eQTL 4.03e-01 -0.037 0.0442 0.69 CD8T L1
ENSG00000111145 ELK3 225320 sc-eQTL 1.13e-01 -0.105 0.0662 0.69 CD8T L1
ENSG00000136014 USP44 868219 sc-eQTL 8.93e-01 0.0102 0.0758 0.69 CD8T L1
ENSG00000139343 SNRPF 560767 sc-eQTL 3.85e-01 0.0474 0.0545 0.69 CD8T L1
ENSG00000139350 NEDD1 -487528 sc-eQTL 7.64e-01 -0.0218 0.0726 0.69 CD8T L1
ENSG00000059758 CDK17 19215 sc-eQTL 1.37e-01 -0.116 0.0775 0.689 DC L1
ENSG00000084110 HAL 423330 sc-eQTL 8.81e-01 -0.0133 0.0887 0.689 DC L1
ENSG00000111142 METAP2 946175 sc-eQTL 9.64e-01 -0.00438 0.0978 0.689 DC L1
ENSG00000111144 LTA4H 376175 sc-eQTL 3.44e-01 -0.0687 0.0724 0.689 DC L1
ENSG00000111145 ELK3 225320 sc-eQTL 2.99e-01 0.0923 0.0886 0.689 DC L1
ENSG00000139343 SNRPF 560767 sc-eQTL 6.22e-01 0.0364 0.0738 0.689 DC L1
ENSG00000139350 NEDD1 -487528 sc-eQTL 7.30e-01 0.0328 0.0948 0.689 DC L1
ENSG00000257715 AC007298.1 394372 sc-eQTL 6.88e-02 -0.155 0.0849 0.689 DC L1
ENSG00000059758 CDK17 19215 sc-eQTL 1.32e-02 -0.155 0.0619 0.69 Mono L1
ENSG00000084110 HAL 423330 sc-eQTL 3.73e-01 -0.0705 0.079 0.69 Mono L1
ENSG00000111142 METAP2 946175 sc-eQTL 6.82e-01 0.0281 0.0684 0.69 Mono L1
ENSG00000111144 LTA4H 376175 sc-eQTL 2.19e-01 -0.11 0.089 0.69 Mono L1
ENSG00000111145 ELK3 225320 sc-eQTL 8.32e-01 0.0127 0.06 0.69 Mono L1
ENSG00000139343 SNRPF 560767 sc-eQTL 5.97e-01 -0.03 0.0566 0.69 Mono L1
ENSG00000139350 NEDD1 -487528 sc-eQTL 2.91e-02 -0.189 0.0859 0.69 Mono L1
ENSG00000257715 AC007298.1 394372 sc-eQTL 6.89e-01 -0.0338 0.0842 0.69 Mono L1
ENSG00000059758 CDK17 19215 sc-eQTL 1.15e-01 0.0722 0.0456 0.693 NK L1
ENSG00000111142 METAP2 946175 sc-eQTL 7.44e-01 0.0222 0.068 0.693 NK L1
ENSG00000111144 LTA4H 376175 sc-eQTL 7.03e-01 -0.0297 0.0779 0.693 NK L1
ENSG00000111145 ELK3 225320 sc-eQTL 9.24e-01 -0.00706 0.0739 0.693 NK L1
ENSG00000139343 SNRPF 560767 sc-eQTL 2.68e-01 -0.0679 0.0611 0.693 NK L1
ENSG00000139350 NEDD1 -487528 sc-eQTL 3.38e-01 -0.0744 0.0774 0.693 NK L1
ENSG00000059758 CDK17 19215 sc-eQTL 9.22e-01 0.00377 0.0386 0.69 Other_T L1
ENSG00000074527 NTN4 628543 sc-eQTL 2.04e-01 -0.0906 0.0711 0.69 Other_T L1
ENSG00000111142 METAP2 946175 sc-eQTL 4.49e-01 0.0558 0.0736 0.69 Other_T L1
ENSG00000111144 LTA4H 376175 sc-eQTL 5.57e-01 -0.0474 0.0806 0.69 Other_T L1
ENSG00000111145 ELK3 225320 sc-eQTL 8.43e-01 -0.0125 0.0629 0.69 Other_T L1
ENSG00000139343 SNRPF 560767 sc-eQTL 8.22e-01 -0.0132 0.0585 0.69 Other_T L1
ENSG00000139350 NEDD1 -487528 sc-eQTL 4.33e-01 -0.0698 0.0889 0.69 Other_T L1
ENSG00000188596 CFAP54 -69876 sc-eQTL 6.96e-01 0.0361 0.0922 0.69 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 19215 sc-eQTL 5.01e-01 0.0578 0.0857 0.694 B_Activated L2
ENSG00000111142 METAP2 946175 sc-eQTL 1.16e-02 0.27 0.106 0.694 B_Activated L2
ENSG00000111144 LTA4H 376175 sc-eQTL 9.73e-01 -0.00326 0.0971 0.694 B_Activated L2
ENSG00000111145 ELK3 225320 sc-eQTL 5.02e-01 0.069 0.103 0.694 B_Activated L2
ENSG00000136014 USP44 868219 sc-eQTL 1.60e-01 -0.111 0.0785 0.694 B_Activated L2
ENSG00000139343 SNRPF 560767 sc-eQTL 3.32e-01 0.0942 0.0967 0.694 B_Activated L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 7.13e-01 0.0373 0.101 0.694 B_Activated L2
ENSG00000059758 CDK17 19215 sc-eQTL 6.60e-01 -0.0332 0.0754 0.689 B_Intermediate L2
ENSG00000111142 METAP2 946175 sc-eQTL 6.05e-01 -0.0448 0.0864 0.689 B_Intermediate L2
ENSG00000111144 LTA4H 376175 sc-eQTL 8.03e-01 -0.0183 0.073 0.689 B_Intermediate L2
ENSG00000111145 ELK3 225320 sc-eQTL 2.28e-01 -0.0992 0.0821 0.689 B_Intermediate L2
ENSG00000136014 USP44 868219 sc-eQTL 3.47e-01 -0.0913 0.0969 0.689 B_Intermediate L2
ENSG00000139343 SNRPF 560767 sc-eQTL 3.80e-01 -0.072 0.0819 0.689 B_Intermediate L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 4.62e-01 -0.0706 0.096 0.689 B_Intermediate L2
ENSG00000059758 CDK17 19215 sc-eQTL 8.21e-02 -0.127 0.0727 0.692 B_Memory L2
ENSG00000111142 METAP2 946175 sc-eQTL 7.81e-01 0.0266 0.0952 0.692 B_Memory L2
ENSG00000111144 LTA4H 376175 sc-eQTL 1.40e-01 -0.125 0.0841 0.692 B_Memory L2
ENSG00000111145 ELK3 225320 sc-eQTL 2.68e-01 -0.0921 0.0829 0.692 B_Memory L2
ENSG00000136014 USP44 868219 sc-eQTL 8.53e-01 -0.017 0.0912 0.692 B_Memory L2
ENSG00000139343 SNRPF 560767 sc-eQTL 8.27e-01 -0.0193 0.0881 0.692 B_Memory L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 6.48e-01 0.0445 0.0974 0.692 B_Memory L2
ENSG00000059758 CDK17 19215 sc-eQTL 5.03e-01 -0.0412 0.0613 0.69 B_Naive1 L2
ENSG00000111142 METAP2 946175 sc-eQTL 4.84e-01 0.0557 0.0793 0.69 B_Naive1 L2
ENSG00000111144 LTA4H 376175 sc-eQTL 2.43e-01 -0.075 0.0641 0.69 B_Naive1 L2
ENSG00000111145 ELK3 225320 sc-eQTL 7.09e-01 -0.0283 0.0759 0.69 B_Naive1 L2
ENSG00000136014 USP44 868219 sc-eQTL 4.31e-01 -0.0753 0.0954 0.69 B_Naive1 L2
ENSG00000139343 SNRPF 560767 sc-eQTL 6.19e-01 0.0368 0.0739 0.69 B_Naive1 L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 1.55e-01 0.135 0.0943 0.69 B_Naive1 L2
ENSG00000059758 CDK17 19215 sc-eQTL 4.97e-01 -0.0521 0.0766 0.691 B_Naive2 L2
ENSG00000111142 METAP2 946175 sc-eQTL 3.10e-01 0.0939 0.0923 0.691 B_Naive2 L2
ENSG00000111144 LTA4H 376175 sc-eQTL 2.34e-01 -0.0864 0.0724 0.691 B_Naive2 L2
ENSG00000111145 ELK3 225320 sc-eQTL 5.95e-01 -0.0456 0.0856 0.691 B_Naive2 L2
ENSG00000136014 USP44 868219 sc-eQTL 3.11e-01 -0.0937 0.0923 0.691 B_Naive2 L2
ENSG00000139343 SNRPF 560767 sc-eQTL 5.43e-01 -0.0517 0.085 0.691 B_Naive2 L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 3.28e-01 -0.0988 0.101 0.691 B_Naive2 L2
ENSG00000059758 CDK17 19215 sc-eQTL 1.08e-01 -0.114 0.0704 0.684 CD4_CTL L2
ENSG00000111142 METAP2 946175 sc-eQTL 5.46e-01 0.0612 0.101 0.684 CD4_CTL L2
ENSG00000111144 LTA4H 376175 sc-eQTL 1.44e-01 -0.146 0.0994 0.684 CD4_CTL L2
ENSG00000111145 ELK3 225320 sc-eQTL 1.50e-02 0.245 0.0996 0.684 CD4_CTL L2
ENSG00000136014 USP44 868219 sc-eQTL 4.52e-01 -0.0607 0.0806 0.684 CD4_CTL L2
ENSG00000139343 SNRPF 560767 sc-eQTL 6.63e-01 -0.0383 0.0879 0.684 CD4_CTL L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 2.78e-01 -0.11 0.101 0.684 CD4_CTL L2
ENSG00000059758 CDK17 19215 sc-eQTL 9.48e-01 0.00287 0.0442 0.69 CD4_Naive L2
ENSG00000111142 METAP2 946175 sc-eQTL 8.22e-01 0.0143 0.0637 0.69 CD4_Naive L2
ENSG00000111144 LTA4H 376175 sc-eQTL 2.18e-01 -0.0786 0.0636 0.69 CD4_Naive L2
ENSG00000111145 ELK3 225320 sc-eQTL 6.12e-01 0.0325 0.0638 0.69 CD4_Naive L2
ENSG00000136014 USP44 868219 sc-eQTL 7.85e-01 0.0244 0.0895 0.69 CD4_Naive L2
ENSG00000139343 SNRPF 560767 sc-eQTL 7.83e-01 -0.0157 0.0567 0.69 CD4_Naive L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 9.34e-01 0.00583 0.0699 0.69 CD4_Naive L2
ENSG00000059758 CDK17 19215 sc-eQTL 9.93e-01 0.000368 0.0429 0.69 CD4_TCM L2
ENSG00000111142 METAP2 946175 sc-eQTL 6.42e-01 -0.034 0.073 0.69 CD4_TCM L2
ENSG00000111144 LTA4H 376175 sc-eQTL 6.53e-01 0.0327 0.0728 0.69 CD4_TCM L2
ENSG00000111145 ELK3 225320 sc-eQTL 2.80e-01 -0.0774 0.0714 0.69 CD4_TCM L2
ENSG00000136014 USP44 868219 sc-eQTL 4.94e-01 0.0677 0.0989 0.69 CD4_TCM L2
ENSG00000139343 SNRPF 560767 sc-eQTL 8.85e-01 -0.00851 0.0587 0.69 CD4_TCM L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 1.52e-01 0.115 0.0799 0.69 CD4_TCM L2
ENSG00000059758 CDK17 19215 sc-eQTL 7.14e-01 0.0194 0.0528 0.69 CD4_TEM L2
ENSG00000111142 METAP2 946175 sc-eQTL 2.82e-01 0.0951 0.0881 0.69 CD4_TEM L2
ENSG00000111144 LTA4H 376175 sc-eQTL 9.43e-01 -0.0058 0.0816 0.69 CD4_TEM L2
ENSG00000111145 ELK3 225320 sc-eQTL 9.26e-01 -0.00705 0.0758 0.69 CD4_TEM L2
ENSG00000136014 USP44 868219 sc-eQTL 6.06e-01 0.0481 0.0933 0.69 CD4_TEM L2
ENSG00000139343 SNRPF 560767 sc-eQTL 6.31e-01 -0.0382 0.0794 0.69 CD4_TEM L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 7.46e-01 -0.0306 0.0941 0.69 CD4_TEM L2
ENSG00000059758 CDK17 19215 sc-eQTL 9.68e-01 0.00209 0.0517 0.69 CD8_CTL L2
ENSG00000111142 METAP2 946175 sc-eQTL 4.17e-01 0.0726 0.0892 0.69 CD8_CTL L2
ENSG00000111144 LTA4H 376175 sc-eQTL 2.64e-01 -0.104 0.093 0.69 CD8_CTL L2
ENSG00000111145 ELK3 225320 sc-eQTL 5.00e-01 0.0574 0.0849 0.69 CD8_CTL L2
ENSG00000136014 USP44 868219 sc-eQTL 6.79e-01 -0.0392 0.0946 0.69 CD8_CTL L2
ENSG00000139343 SNRPF 560767 sc-eQTL 6.65e-01 0.0339 0.078 0.69 CD8_CTL L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 6.42e-01 -0.0407 0.0875 0.69 CD8_CTL L2
ENSG00000059758 CDK17 19215 sc-eQTL 2.73e-01 -0.0674 0.0614 0.69 CD8_Naive L2
ENSG00000111142 METAP2 946175 sc-eQTL 9.64e-01 -0.00365 0.0818 0.69 CD8_Naive L2
ENSG00000111144 LTA4H 376175 sc-eQTL 7.49e-01 0.0237 0.0737 0.69 CD8_Naive L2
ENSG00000111145 ELK3 225320 sc-eQTL 1.26e-01 -0.119 0.0776 0.69 CD8_Naive L2
ENSG00000136014 USP44 868219 sc-eQTL 9.82e-01 0.00186 0.0819 0.69 CD8_Naive L2
ENSG00000139343 SNRPF 560767 sc-eQTL 6.63e-01 0.0306 0.0701 0.69 CD8_Naive L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 8.82e-01 0.0124 0.0835 0.69 CD8_Naive L2
ENSG00000059758 CDK17 19215 sc-eQTL 5.80e-01 0.0368 0.0664 0.683 CD8_TCM L2
ENSG00000111142 METAP2 946175 sc-eQTL 3.81e-01 0.0869 0.099 0.683 CD8_TCM L2
ENSG00000111144 LTA4H 376175 sc-eQTL 4.72e-01 0.0703 0.0976 0.683 CD8_TCM L2
ENSG00000111145 ELK3 225320 sc-eQTL 3.56e-01 -0.0763 0.0825 0.683 CD8_TCM L2
ENSG00000136014 USP44 868219 sc-eQTL 2.79e-01 0.097 0.0893 0.683 CD8_TCM L2
ENSG00000139343 SNRPF 560767 sc-eQTL 9.07e-01 0.0111 0.0953 0.683 CD8_TCM L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 2.97e-01 -0.0972 0.093 0.683 CD8_TCM L2
ENSG00000059758 CDK17 19215 sc-eQTL 7.47e-01 -0.027 0.0837 0.694 CD8_TEM L2
ENSG00000111142 METAP2 946175 sc-eQTL 1.94e-01 0.127 0.0978 0.694 CD8_TEM L2
ENSG00000111144 LTA4H 376175 sc-eQTL 9.59e-01 -0.00526 0.102 0.694 CD8_TEM L2
ENSG00000111145 ELK3 225320 sc-eQTL 8.97e-01 -0.0131 0.101 0.694 CD8_TEM L2
ENSG00000136014 USP44 868219 sc-eQTL 1.27e-01 -0.131 0.0853 0.694 CD8_TEM L2
ENSG00000139343 SNRPF 560767 sc-eQTL 5.14e-01 0.0612 0.0935 0.694 CD8_TEM L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 2.27e-01 -0.123 0.101 0.694 CD8_TEM L2
ENSG00000059758 CDK17 19215 sc-eQTL 1.74e-01 -0.0749 0.0549 0.688 MAIT L2
ENSG00000074527 NTN4 628543 sc-eQTL 5.70e-01 -0.0422 0.0743 0.688 MAIT L2
ENSG00000111142 METAP2 946175 sc-eQTL 3.16e-01 0.0939 0.0934 0.688 MAIT L2
ENSG00000111144 LTA4H 376175 sc-eQTL 2.94e-01 0.0895 0.085 0.688 MAIT L2
ENSG00000111145 ELK3 225320 sc-eQTL 4.71e-01 -0.0516 0.0714 0.688 MAIT L2
ENSG00000139343 SNRPF 560767 sc-eQTL 5.15e-01 -0.0541 0.0828 0.688 MAIT L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 6.08e-01 -0.0478 0.093 0.688 MAIT L2
ENSG00000188596 CFAP54 -69876 sc-eQTL 8.43e-01 -0.0183 0.0922 0.688 MAIT L2
ENSG00000059758 CDK17 19215 sc-eQTL 4.20e-02 0.118 0.0576 0.693 NK_CD56bright L2
ENSG00000111142 METAP2 946175 sc-eQTL 4.44e-01 0.0753 0.0981 0.693 NK_CD56bright L2
ENSG00000111144 LTA4H 376175 sc-eQTL 3.82e-01 0.0753 0.086 0.693 NK_CD56bright L2
ENSG00000111145 ELK3 225320 sc-eQTL 3.13e-01 0.0923 0.0911 0.693 NK_CD56bright L2
ENSG00000139343 SNRPF 560767 sc-eQTL 8.04e-01 -0.0238 0.0956 0.693 NK_CD56bright L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 5.35e-01 -0.0599 0.0964 0.693 NK_CD56bright L2
ENSG00000059758 CDK17 19215 sc-eQTL 4.79e-02 0.0983 0.0494 0.694 NK_CD56dim L2
ENSG00000111142 METAP2 946175 sc-eQTL 5.42e-01 0.0534 0.0873 0.694 NK_CD56dim L2
ENSG00000111144 LTA4H 376175 sc-eQTL 9.40e-01 0.0068 0.0901 0.694 NK_CD56dim L2
ENSG00000111145 ELK3 225320 sc-eQTL 7.07e-01 -0.03 0.0798 0.694 NK_CD56dim L2
ENSG00000139343 SNRPF 560767 sc-eQTL 1.55e-01 -0.108 0.0756 0.694 NK_CD56dim L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 9.18e-01 0.00899 0.0874 0.694 NK_CD56dim L2
ENSG00000059758 CDK17 19215 sc-eQTL 1.59e-01 -0.11 0.0777 0.694 NK_HLA L2
ENSG00000111142 METAP2 946175 sc-eQTL 7.65e-01 0.0295 0.0984 0.694 NK_HLA L2
ENSG00000111144 LTA4H 376175 sc-eQTL 8.65e-02 -0.175 0.102 0.694 NK_HLA L2
ENSG00000111145 ELK3 225320 sc-eQTL 9.42e-01 -0.00696 0.095 0.694 NK_HLA L2
ENSG00000139343 SNRPF 560767 sc-eQTL 5.05e-01 -0.066 0.0989 0.694 NK_HLA L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 2.51e-01 -0.108 0.0933 0.694 NK_HLA L2
ENSG00000059758 CDK17 19215 sc-eQTL 3.76e-01 0.0481 0.0543 0.694 NK_cytokine L2
ENSG00000111142 METAP2 946175 sc-eQTL 6.92e-01 0.0359 0.0903 0.694 NK_cytokine L2
ENSG00000111144 LTA4H 376175 sc-eQTL 2.63e-01 -0.103 0.0917 0.694 NK_cytokine L2
ENSG00000111145 ELK3 225320 sc-eQTL 9.11e-01 -0.0099 0.088 0.694 NK_cytokine L2
ENSG00000139343 SNRPF 560767 sc-eQTL 8.89e-01 -0.0104 0.0746 0.694 NK_cytokine L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 3.55e-01 -0.0854 0.092 0.694 NK_cytokine L2
ENSG00000059758 CDK17 19215 sc-eQTL 3.16e-01 -0.11 0.11 0.704 PB L2
ENSG00000111142 METAP2 946175 sc-eQTL 2.00e-01 0.165 0.128 0.704 PB L2
ENSG00000111144 LTA4H 376175 sc-eQTL 5.44e-01 -0.059 0.0969 0.704 PB L2
ENSG00000111145 ELK3 225320 sc-eQTL 7.24e-01 0.0441 0.124 0.704 PB L2
ENSG00000136014 USP44 868219 sc-eQTL 4.07e-01 -0.0957 0.115 0.704 PB L2
ENSG00000139343 SNRPF 560767 sc-eQTL 4.62e-01 -0.0894 0.121 0.704 PB L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 4.01e-01 0.121 0.144 0.704 PB L2
ENSG00000059758 CDK17 19215 sc-eQTL 7.38e-01 -0.0205 0.061 0.691 Pro_T L2
ENSG00000074527 NTN4 628543 sc-eQTL 7.97e-01 -0.0176 0.0685 0.691 Pro_T L2
ENSG00000111142 METAP2 946175 sc-eQTL 4.85e-01 0.0566 0.0809 0.691 Pro_T L2
ENSG00000111144 LTA4H 376175 sc-eQTL 2.14e-01 -0.1 0.0803 0.691 Pro_T L2
ENSG00000111145 ELK3 225320 sc-eQTL 1.62e-01 -0.136 0.097 0.691 Pro_T L2
ENSG00000139343 SNRPF 560767 sc-eQTL 7.06e-01 0.0232 0.0615 0.691 Pro_T L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 2.36e-01 -0.106 0.089 0.691 Pro_T L2
ENSG00000188596 CFAP54 -69876 sc-eQTL 6.00e-01 -0.0379 0.0722 0.691 Pro_T L2
ENSG00000059758 CDK17 19215 sc-eQTL 4.21e-01 -0.0537 0.0666 0.69 Treg L2
ENSG00000111142 METAP2 946175 sc-eQTL 9.57e-01 -0.00492 0.0907 0.69 Treg L2
ENSG00000111144 LTA4H 376175 sc-eQTL 3.96e-01 0.0717 0.0843 0.69 Treg L2
ENSG00000111145 ELK3 225320 sc-eQTL 3.96e-01 -0.0649 0.0764 0.69 Treg L2
ENSG00000136014 USP44 868219 sc-eQTL 1.27e-01 0.131 0.0855 0.69 Treg L2
ENSG00000139343 SNRPF 560767 sc-eQTL 7.00e-01 0.0341 0.0886 0.69 Treg L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 9.33e-01 -0.00833 0.0989 0.69 Treg L2
ENSG00000059758 CDK17 19215 sc-eQTL 7.41e-01 -0.0273 0.0824 0.683 cDC L2
ENSG00000084110 HAL 423330 sc-eQTL 4.89e-01 0.0593 0.0856 0.683 cDC L2
ENSG00000111142 METAP2 946175 sc-eQTL 2.48e-01 0.12 0.103 0.683 cDC L2
ENSG00000111144 LTA4H 376175 sc-eQTL 4.82e-01 -0.0517 0.0734 0.683 cDC L2
ENSG00000111145 ELK3 225320 sc-eQTL 1.54e-01 0.138 0.0964 0.683 cDC L2
ENSG00000139343 SNRPF 560767 sc-eQTL 2.20e-01 -0.0994 0.0808 0.683 cDC L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 4.29e-01 0.0782 0.0987 0.683 cDC L2
ENSG00000257715 AC007298.1 394372 sc-eQTL 2.42e-01 -0.0976 0.0831 0.683 cDC L2
ENSG00000059758 CDK17 19215 sc-eQTL 3.05e-06 -0.329 0.0685 0.69 cMono_IL1B L2
ENSG00000084110 HAL 423330 sc-eQTL 3.87e-01 -0.0681 0.0785 0.69 cMono_IL1B L2
ENSG00000111142 METAP2 946175 sc-eQTL 3.17e-01 0.0817 0.0814 0.69 cMono_IL1B L2
ENSG00000111144 LTA4H 376175 sc-eQTL 2.56e-01 -0.0964 0.0847 0.69 cMono_IL1B L2
ENSG00000111145 ELK3 225320 sc-eQTL 8.23e-01 -0.0146 0.0655 0.69 cMono_IL1B L2
ENSG00000139343 SNRPF 560767 sc-eQTL 9.24e-01 -0.00648 0.0675 0.69 cMono_IL1B L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 6.19e-02 -0.173 0.0923 0.69 cMono_IL1B L2
ENSG00000257715 AC007298.1 394372 sc-eQTL 8.26e-01 0.0191 0.0868 0.69 cMono_IL1B L2
ENSG00000059758 CDK17 19215 sc-eQTL 7.81e-02 -0.144 0.0812 0.69 cMono_S100A L2
ENSG00000084110 HAL 423330 sc-eQTL 7.18e-01 0.0332 0.0918 0.69 cMono_S100A L2
ENSG00000111142 METAP2 946175 sc-eQTL 5.76e-01 0.052 0.0929 0.69 cMono_S100A L2
ENSG00000111144 LTA4H 376175 sc-eQTL 2.29e-01 -0.11 0.0914 0.69 cMono_S100A L2
ENSG00000111145 ELK3 225320 sc-eQTL 7.17e-01 0.0271 0.0747 0.69 cMono_S100A L2
ENSG00000139343 SNRPF 560767 sc-eQTL 2.54e-01 -0.0842 0.0736 0.69 cMono_S100A L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 1.86e-01 -0.132 0.0993 0.69 cMono_S100A L2
ENSG00000257715 AC007298.1 394372 sc-eQTL 5.09e-01 -0.062 0.0937 0.69 cMono_S100A L2
ENSG00000059758 CDK17 19215 sc-eQTL 1.73e-01 0.105 0.0765 0.679 gdT L2
ENSG00000074527 NTN4 628543 sc-eQTL 8.30e-01 -0.019 0.0883 0.679 gdT L2
ENSG00000111142 METAP2 946175 sc-eQTL 2.86e-01 0.118 0.11 0.679 gdT L2
ENSG00000111144 LTA4H 376175 sc-eQTL 2.34e-01 -0.137 0.115 0.679 gdT L2
ENSG00000111145 ELK3 225320 sc-eQTL 2.02e-01 0.136 0.106 0.679 gdT L2
ENSG00000139343 SNRPF 560767 sc-eQTL 6.68e-02 0.188 0.102 0.679 gdT L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 6.47e-01 0.0521 0.113 0.679 gdT L2
ENSG00000188596 CFAP54 -69876 sc-eQTL 4.21e-02 0.201 0.0981 0.679 gdT L2
ENSG00000059758 CDK17 19215 sc-eQTL 8.68e-01 0.0153 0.0915 0.689 intMono L2
ENSG00000084110 HAL 423330 sc-eQTL 9.28e-01 -0.00839 0.0926 0.689 intMono L2
ENSG00000111142 METAP2 946175 sc-eQTL 4.53e-01 -0.0787 0.105 0.689 intMono L2
ENSG00000111144 LTA4H 376175 sc-eQTL 8.77e-02 -0.162 0.0943 0.689 intMono L2
ENSG00000111145 ELK3 225320 sc-eQTL 9.26e-01 -0.00788 0.0846 0.689 intMono L2
ENSG00000139343 SNRPF 560767 sc-eQTL 1.85e-01 -0.12 0.09 0.689 intMono L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 9.57e-01 0.00501 0.0939 0.689 intMono L2
ENSG00000257715 AC007298.1 394372 sc-eQTL 7.70e-01 0.0277 0.0945 0.689 intMono L2
ENSG00000059758 CDK17 19215 sc-eQTL 6.91e-01 0.0298 0.075 0.695 ncMono L2
ENSG00000084110 HAL 423330 sc-eQTL 1.91e-01 -0.109 0.0834 0.695 ncMono L2
ENSG00000111142 METAP2 946175 sc-eQTL 5.02e-01 0.068 0.101 0.695 ncMono L2
ENSG00000111144 LTA4H 376175 sc-eQTL 2.32e-01 -0.112 0.093 0.695 ncMono L2
ENSG00000111145 ELK3 225320 sc-eQTL 7.54e-01 -0.0252 0.0801 0.695 ncMono L2
ENSG00000139343 SNRPF 560767 sc-eQTL 9.80e-01 -0.00203 0.0819 0.695 ncMono L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 2.43e-02 -0.195 0.0858 0.695 ncMono L2
ENSG00000257715 AC007298.1 394372 sc-eQTL 4.34e-01 -0.0777 0.0991 0.695 ncMono L2
ENSG00000059758 CDK17 19215 sc-eQTL 1.39e-02 -0.237 0.0954 0.675 pDC L2
ENSG00000084110 HAL 423330 sc-eQTL 7.24e-01 -0.029 0.0821 0.675 pDC L2
ENSG00000111142 METAP2 946175 sc-eQTL 9.03e-02 -0.187 0.11 0.675 pDC L2
ENSG00000111144 LTA4H 376175 sc-eQTL 6.01e-01 -0.0482 0.0918 0.675 pDC L2
ENSG00000111145 ELK3 225320 sc-eQTL 9.58e-01 0.00599 0.112 0.675 pDC L2
ENSG00000139343 SNRPF 560767 sc-eQTL 4.89e-01 0.068 0.098 0.675 pDC L2
ENSG00000139350 NEDD1 -487528 sc-eQTL 6.62e-01 0.0474 0.108 0.675 pDC L2
ENSG00000257715 AC007298.1 394372 sc-eQTL 9.75e-01 0.00286 0.0928 0.675 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 19215 sc-eQTL 1.74e-01 -0.0864 0.0632 0.69 B_Memory LOneK1K
ENSG00000111142 METAP2 946175 sc-eQTL 8.61e-01 -0.0155 0.0883 0.69 B_Memory LOneK1K
ENSG00000111144 LTA4H 376175 sc-eQTL 4.81e-01 -0.0465 0.0659 0.69 B_Memory LOneK1K
ENSG00000111145 ELK3 225320 sc-eQTL 1.71e-01 -0.103 0.0751 0.69 B_Memory LOneK1K
ENSG00000136014 USP44 868219 sc-eQTL 2.84e-01 -0.101 0.0937 0.69 B_Memory LOneK1K
ENSG00000139343 SNRPF 560767 sc-eQTL 4.56e-01 -0.0544 0.073 0.69 B_Memory LOneK1K
ENSG00000139350 NEDD1 -487528 sc-eQTL 8.71e-01 0.0156 0.0958 0.69 B_Memory LOneK1K
ENSG00000059758 CDK17 19215 sc-eQTL 2.87e-01 -0.0584 0.0547 0.69 B_Naive LOneK1K
ENSG00000111142 METAP2 946175 sc-eQTL 2.21e-01 0.0909 0.074 0.69 B_Naive LOneK1K
ENSG00000111144 LTA4H 376175 sc-eQTL 3.49e-01 -0.0577 0.0615 0.69 B_Naive LOneK1K
ENSG00000111145 ELK3 225320 sc-eQTL 2.77e-01 -0.0762 0.0699 0.69 B_Naive LOneK1K
ENSG00000136014 USP44 868219 sc-eQTL 3.40e-01 -0.0819 0.0856 0.69 B_Naive LOneK1K
ENSG00000139343 SNRPF 560767 sc-eQTL 5.52e-01 -0.042 0.0706 0.69 B_Naive LOneK1K
ENSG00000139350 NEDD1 -487528 sc-eQTL 4.14e-01 0.0764 0.0933 0.69 B_Naive LOneK1K
ENSG00000059758 CDK17 19215 sc-eQTL 1.72e-05 -0.275 0.0626 0.69 CD14_Mono LOneK1K
ENSG00000084110 HAL 423330 sc-eQTL 4.50e-01 -0.0599 0.0791 0.69 CD14_Mono LOneK1K
ENSG00000111142 METAP2 946175 sc-eQTL 6.06e-01 0.0386 0.0746 0.69 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 376175 sc-eQTL 3.26e-01 -0.0854 0.0868 0.69 CD14_Mono LOneK1K
ENSG00000111145 ELK3 225320 sc-eQTL 7.28e-01 0.0219 0.0628 0.69 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 560767 sc-eQTL 5.60e-01 -0.0354 0.0606 0.69 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -487528 sc-eQTL 7.49e-02 -0.169 0.0944 0.69 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 394372 sc-eQTL 7.98e-01 -0.0225 0.0881 0.69 CD14_Mono LOneK1K
ENSG00000059758 CDK17 19215 sc-eQTL 7.56e-01 0.0212 0.0681 0.694 CD16_Mono LOneK1K
ENSG00000084110 HAL 423330 sc-eQTL 3.87e-01 -0.0697 0.0804 0.694 CD16_Mono LOneK1K
ENSG00000111142 METAP2 946175 sc-eQTL 6.17e-01 -0.0457 0.0913 0.694 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 376175 sc-eQTL 1.39e-01 -0.132 0.0888 0.694 CD16_Mono LOneK1K
ENSG00000111145 ELK3 225320 sc-eQTL 5.91e-01 -0.0355 0.066 0.694 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 560767 sc-eQTL 7.26e-01 -0.0239 0.0681 0.694 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -487528 sc-eQTL 1.02e-01 -0.142 0.0868 0.694 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 394372 sc-eQTL 4.70e-01 -0.0669 0.0923 0.694 CD16_Mono LOneK1K
ENSG00000059758 CDK17 19215 sc-eQTL 3.19e-01 0.0464 0.0465 0.694 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 946175 sc-eQTL 8.71e-01 0.0115 0.071 0.694 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 376175 sc-eQTL 5.66e-01 -0.0466 0.0811 0.694 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 225320 sc-eQTL 7.51e-01 -0.0236 0.0742 0.694 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 560767 sc-eQTL 1.34e-01 -0.0951 0.0632 0.694 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -487528 sc-eQTL 5.11e-01 -0.0521 0.0791 0.694 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111145 ELK3 225320 eQTL 0.00101 -0.0582 0.0176 0.0 0.0 0.332
ENSG00000139344 AMDHD1 476364 eQTL 0.038 -0.0708 0.0341 0.0 0.0 0.332
ENSG00000139350 NEDD1 -487528 eQTL 0.0096 -0.0637 0.0246 0.0 0.0 0.332
ENSG00000188596 CFAP54 -69880 eQTL 0.000796 -0.0688 0.0204 0.00127 0.0 0.332

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000059758 \N 19215 1.67e-05 2.05e-05 3.05e-06 1.08e-05 3.03e-06 7.78e-06 2.29e-05 2.68e-06 1.73e-05 8.98e-06 2.31e-05 8.71e-06 3.17e-05 7.62e-06 5.14e-06 1.01e-05 9.64e-06 1.51e-05 4.95e-06 4.14e-06 8.4e-06 1.78e-05 1.81e-05 5.19e-06 2.96e-05 5.34e-06 7.94e-06 7.57e-06 1.78e-05 1.71e-05 1.23e-05 1.19e-06 1.57e-06 4.35e-06 7.67e-06 4.06e-06 1.91e-06 2.71e-06 3.31e-06 2.1e-06 1.48e-06 2.44e-05 2.48e-06 2.73e-07 1.44e-06 2.61e-06 2.91e-06 1.2e-06 8.23e-07
ENSG00000111145 ELK3 225320 1.65e-06 2.37e-06 2.87e-07 1.28e-06 3.92e-07 6.43e-07 1.31e-06 4.11e-07 1.73e-06 7.15e-07 1.86e-06 1.28e-06 3.31e-06 8.7e-07 3.96e-07 9.68e-07 1.12e-06 1.16e-06 5.23e-07 4.4e-07 7.41e-07 1.95e-06 1.64e-06 6.43e-07 2.69e-06 7.4e-07 1.03e-06 8.57e-07 1.7e-06 1.66e-06 7.46e-07 3.01e-07 3.44e-07 6.15e-07 9.13e-07 5.42e-07 7.14e-07 3.38e-07 5.37e-07 2.01e-07 3.57e-07 2.82e-06 1.53e-07 1.99e-07 2.22e-07 2.03e-07 2.79e-07 1.49e-07 1.25e-07
ENSG00000188596 CFAP54 -69880 6.97e-06 9.3e-06 7.57e-07 4.01e-06 1.74e-06 2.76e-06 9.36e-06 1.2e-06 5.67e-06 4.01e-06 1.02e-05 4.41e-06 1.15e-05 3.82e-06 1.58e-06 4.67e-06 3.7e-06 3.8e-06 2.2e-06 1.63e-06 3.16e-06 7.57e-06 6.29e-06 1.93e-06 1.22e-05 2.2e-06 3.44e-06 2.1e-06 6.77e-06 7.71e-06 4.12e-06 4.46e-07 7.94e-07 2.63e-06 2.89e-06 1.84e-06 1.24e-06 8.97e-07 1.27e-06 7.73e-07 8.22e-07 1.03e-05 6.47e-07 1.7e-07 6.1e-07 8.09e-07 1.05e-06 6.85e-07 4.38e-07