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Genes within 1Mb (chr12:96419144:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 18664 sc-eQTL 1.09e-01 -0.0779 0.0484 0.69 B L1
ENSG00000111142 METAP2 945624 sc-eQTL 4.68e-01 0.05 0.0688 0.69 B L1
ENSG00000111144 LTA4H 375624 sc-eQTL 7.75e-01 -0.0173 0.0605 0.69 B L1
ENSG00000111145 ELK3 224769 sc-eQTL 3.58e-01 -0.0592 0.0642 0.69 B L1
ENSG00000136014 USP44 867668 sc-eQTL 8.11e-02 -0.138 0.0788 0.69 B L1
ENSG00000139343 SNRPF 560216 sc-eQTL 1.20e-01 -0.0908 0.0581 0.69 B L1
ENSG00000139350 NEDD1 -488079 sc-eQTL 4.93e-01 0.0585 0.0853 0.69 B L1
ENSG00000059758 CDK17 18664 sc-eQTL 7.31e-01 -0.0138 0.0401 0.69 CD4T L1
ENSG00000111142 METAP2 945624 sc-eQTL 8.97e-01 0.00729 0.056 0.69 CD4T L1
ENSG00000111144 LTA4H 375624 sc-eQTL 4.47e-01 -0.0419 0.0551 0.69 CD4T L1
ENSG00000111145 ELK3 224769 sc-eQTL 7.76e-01 0.017 0.0597 0.69 CD4T L1
ENSG00000136014 USP44 867668 sc-eQTL 9.53e-01 0.00504 0.0852 0.69 CD4T L1
ENSG00000139343 SNRPF 560216 sc-eQTL 6.73e-01 -0.022 0.0522 0.69 CD4T L1
ENSG00000139350 NEDD1 -488079 sc-eQTL 5.38e-01 0.0396 0.0642 0.69 CD4T L1
ENSG00000059758 CDK17 18664 sc-eQTL 2.43e-01 -0.0481 0.0411 0.69 CD8T L1
ENSG00000111142 METAP2 945624 sc-eQTL 4.11e-01 0.0547 0.0664 0.69 CD8T L1
ENSG00000111144 LTA4H 375624 sc-eQTL 4.03e-01 -0.037 0.0442 0.69 CD8T L1
ENSG00000111145 ELK3 224769 sc-eQTL 1.13e-01 -0.105 0.0662 0.69 CD8T L1
ENSG00000136014 USP44 867668 sc-eQTL 8.93e-01 0.0102 0.0758 0.69 CD8T L1
ENSG00000139343 SNRPF 560216 sc-eQTL 3.85e-01 0.0474 0.0545 0.69 CD8T L1
ENSG00000139350 NEDD1 -488079 sc-eQTL 7.64e-01 -0.0218 0.0726 0.69 CD8T L1
ENSG00000059758 CDK17 18664 sc-eQTL 1.37e-01 -0.116 0.0775 0.689 DC L1
ENSG00000084110 HAL 422779 sc-eQTL 8.81e-01 -0.0133 0.0887 0.689 DC L1
ENSG00000111142 METAP2 945624 sc-eQTL 9.64e-01 -0.00438 0.0978 0.689 DC L1
ENSG00000111144 LTA4H 375624 sc-eQTL 3.44e-01 -0.0687 0.0724 0.689 DC L1
ENSG00000111145 ELK3 224769 sc-eQTL 2.99e-01 0.0923 0.0886 0.689 DC L1
ENSG00000139343 SNRPF 560216 sc-eQTL 6.22e-01 0.0364 0.0738 0.689 DC L1
ENSG00000139350 NEDD1 -488079 sc-eQTL 7.30e-01 0.0328 0.0948 0.689 DC L1
ENSG00000257715 AC007298.1 393821 sc-eQTL 6.88e-02 -0.155 0.0849 0.689 DC L1
ENSG00000059758 CDK17 18664 sc-eQTL 1.32e-02 -0.155 0.0619 0.69 Mono L1
ENSG00000084110 HAL 422779 sc-eQTL 3.73e-01 -0.0705 0.079 0.69 Mono L1
ENSG00000111142 METAP2 945624 sc-eQTL 6.82e-01 0.0281 0.0684 0.69 Mono L1
ENSG00000111144 LTA4H 375624 sc-eQTL 2.19e-01 -0.11 0.089 0.69 Mono L1
ENSG00000111145 ELK3 224769 sc-eQTL 8.32e-01 0.0127 0.06 0.69 Mono L1
ENSG00000139343 SNRPF 560216 sc-eQTL 5.97e-01 -0.03 0.0566 0.69 Mono L1
ENSG00000139350 NEDD1 -488079 sc-eQTL 2.91e-02 -0.189 0.0859 0.69 Mono L1
ENSG00000257715 AC007298.1 393821 sc-eQTL 6.89e-01 -0.0338 0.0842 0.69 Mono L1
ENSG00000059758 CDK17 18664 sc-eQTL 1.15e-01 0.0722 0.0456 0.693 NK L1
ENSG00000111142 METAP2 945624 sc-eQTL 7.44e-01 0.0222 0.068 0.693 NK L1
ENSG00000111144 LTA4H 375624 sc-eQTL 7.03e-01 -0.0297 0.0779 0.693 NK L1
ENSG00000111145 ELK3 224769 sc-eQTL 9.24e-01 -0.00706 0.0739 0.693 NK L1
ENSG00000139343 SNRPF 560216 sc-eQTL 2.68e-01 -0.0679 0.0611 0.693 NK L1
ENSG00000139350 NEDD1 -488079 sc-eQTL 3.38e-01 -0.0744 0.0774 0.693 NK L1
ENSG00000059758 CDK17 18664 sc-eQTL 9.22e-01 0.00377 0.0386 0.69 Other_T L1
ENSG00000074527 NTN4 627992 sc-eQTL 2.04e-01 -0.0906 0.0711 0.69 Other_T L1
ENSG00000111142 METAP2 945624 sc-eQTL 4.49e-01 0.0558 0.0736 0.69 Other_T L1
ENSG00000111144 LTA4H 375624 sc-eQTL 5.57e-01 -0.0474 0.0806 0.69 Other_T L1
ENSG00000111145 ELK3 224769 sc-eQTL 8.43e-01 -0.0125 0.0629 0.69 Other_T L1
ENSG00000139343 SNRPF 560216 sc-eQTL 8.22e-01 -0.0132 0.0585 0.69 Other_T L1
ENSG00000139350 NEDD1 -488079 sc-eQTL 4.33e-01 -0.0698 0.0889 0.69 Other_T L1
ENSG00000188596 CFAP54 -70427 sc-eQTL 6.96e-01 0.0361 0.0922 0.69 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 18664 sc-eQTL 5.01e-01 0.0578 0.0857 0.694 B_Activated L2
ENSG00000111142 METAP2 945624 sc-eQTL 1.16e-02 0.27 0.106 0.694 B_Activated L2
ENSG00000111144 LTA4H 375624 sc-eQTL 9.73e-01 -0.00326 0.0971 0.694 B_Activated L2
ENSG00000111145 ELK3 224769 sc-eQTL 5.02e-01 0.069 0.103 0.694 B_Activated L2
ENSG00000136014 USP44 867668 sc-eQTL 1.60e-01 -0.111 0.0785 0.694 B_Activated L2
ENSG00000139343 SNRPF 560216 sc-eQTL 3.32e-01 0.0942 0.0967 0.694 B_Activated L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 7.13e-01 0.0373 0.101 0.694 B_Activated L2
ENSG00000059758 CDK17 18664 sc-eQTL 6.60e-01 -0.0332 0.0754 0.689 B_Intermediate L2
ENSG00000111142 METAP2 945624 sc-eQTL 6.05e-01 -0.0448 0.0864 0.689 B_Intermediate L2
ENSG00000111144 LTA4H 375624 sc-eQTL 8.03e-01 -0.0183 0.073 0.689 B_Intermediate L2
ENSG00000111145 ELK3 224769 sc-eQTL 2.28e-01 -0.0992 0.0821 0.689 B_Intermediate L2
ENSG00000136014 USP44 867668 sc-eQTL 3.47e-01 -0.0913 0.0969 0.689 B_Intermediate L2
ENSG00000139343 SNRPF 560216 sc-eQTL 3.80e-01 -0.072 0.0819 0.689 B_Intermediate L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 4.62e-01 -0.0706 0.096 0.689 B_Intermediate L2
ENSG00000059758 CDK17 18664 sc-eQTL 8.21e-02 -0.127 0.0727 0.692 B_Memory L2
ENSG00000111142 METAP2 945624 sc-eQTL 7.81e-01 0.0266 0.0952 0.692 B_Memory L2
ENSG00000111144 LTA4H 375624 sc-eQTL 1.40e-01 -0.125 0.0841 0.692 B_Memory L2
ENSG00000111145 ELK3 224769 sc-eQTL 2.68e-01 -0.0921 0.0829 0.692 B_Memory L2
ENSG00000136014 USP44 867668 sc-eQTL 8.53e-01 -0.017 0.0912 0.692 B_Memory L2
ENSG00000139343 SNRPF 560216 sc-eQTL 8.27e-01 -0.0193 0.0881 0.692 B_Memory L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 6.48e-01 0.0445 0.0974 0.692 B_Memory L2
ENSG00000059758 CDK17 18664 sc-eQTL 5.03e-01 -0.0412 0.0613 0.69 B_Naive1 L2
ENSG00000111142 METAP2 945624 sc-eQTL 4.84e-01 0.0557 0.0793 0.69 B_Naive1 L2
ENSG00000111144 LTA4H 375624 sc-eQTL 2.43e-01 -0.075 0.0641 0.69 B_Naive1 L2
ENSG00000111145 ELK3 224769 sc-eQTL 7.09e-01 -0.0283 0.0759 0.69 B_Naive1 L2
ENSG00000136014 USP44 867668 sc-eQTL 4.31e-01 -0.0753 0.0954 0.69 B_Naive1 L2
ENSG00000139343 SNRPF 560216 sc-eQTL 6.19e-01 0.0368 0.0739 0.69 B_Naive1 L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 1.55e-01 0.135 0.0943 0.69 B_Naive1 L2
ENSG00000059758 CDK17 18664 sc-eQTL 4.97e-01 -0.0521 0.0766 0.691 B_Naive2 L2
ENSG00000111142 METAP2 945624 sc-eQTL 3.10e-01 0.0939 0.0923 0.691 B_Naive2 L2
ENSG00000111144 LTA4H 375624 sc-eQTL 2.34e-01 -0.0864 0.0724 0.691 B_Naive2 L2
ENSG00000111145 ELK3 224769 sc-eQTL 5.95e-01 -0.0456 0.0856 0.691 B_Naive2 L2
ENSG00000136014 USP44 867668 sc-eQTL 3.11e-01 -0.0937 0.0923 0.691 B_Naive2 L2
ENSG00000139343 SNRPF 560216 sc-eQTL 5.43e-01 -0.0517 0.085 0.691 B_Naive2 L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 3.28e-01 -0.0988 0.101 0.691 B_Naive2 L2
ENSG00000059758 CDK17 18664 sc-eQTL 1.08e-01 -0.114 0.0704 0.684 CD4_CTL L2
ENSG00000111142 METAP2 945624 sc-eQTL 5.46e-01 0.0612 0.101 0.684 CD4_CTL L2
ENSG00000111144 LTA4H 375624 sc-eQTL 1.44e-01 -0.146 0.0994 0.684 CD4_CTL L2
ENSG00000111145 ELK3 224769 sc-eQTL 1.50e-02 0.245 0.0996 0.684 CD4_CTL L2
ENSG00000136014 USP44 867668 sc-eQTL 4.52e-01 -0.0607 0.0806 0.684 CD4_CTL L2
ENSG00000139343 SNRPF 560216 sc-eQTL 6.63e-01 -0.0383 0.0879 0.684 CD4_CTL L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 2.78e-01 -0.11 0.101 0.684 CD4_CTL L2
ENSG00000059758 CDK17 18664 sc-eQTL 9.48e-01 0.00287 0.0442 0.69 CD4_Naive L2
ENSG00000111142 METAP2 945624 sc-eQTL 8.22e-01 0.0143 0.0637 0.69 CD4_Naive L2
ENSG00000111144 LTA4H 375624 sc-eQTL 2.18e-01 -0.0786 0.0636 0.69 CD4_Naive L2
ENSG00000111145 ELK3 224769 sc-eQTL 6.12e-01 0.0325 0.0638 0.69 CD4_Naive L2
ENSG00000136014 USP44 867668 sc-eQTL 7.85e-01 0.0244 0.0895 0.69 CD4_Naive L2
ENSG00000139343 SNRPF 560216 sc-eQTL 7.83e-01 -0.0157 0.0567 0.69 CD4_Naive L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 9.34e-01 0.00583 0.0699 0.69 CD4_Naive L2
ENSG00000059758 CDK17 18664 sc-eQTL 9.93e-01 0.000368 0.0429 0.69 CD4_TCM L2
ENSG00000111142 METAP2 945624 sc-eQTL 6.42e-01 -0.034 0.073 0.69 CD4_TCM L2
ENSG00000111144 LTA4H 375624 sc-eQTL 6.53e-01 0.0327 0.0728 0.69 CD4_TCM L2
ENSG00000111145 ELK3 224769 sc-eQTL 2.80e-01 -0.0774 0.0714 0.69 CD4_TCM L2
ENSG00000136014 USP44 867668 sc-eQTL 4.94e-01 0.0677 0.0989 0.69 CD4_TCM L2
ENSG00000139343 SNRPF 560216 sc-eQTL 8.85e-01 -0.00851 0.0587 0.69 CD4_TCM L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 1.52e-01 0.115 0.0799 0.69 CD4_TCM L2
ENSG00000059758 CDK17 18664 sc-eQTL 7.14e-01 0.0194 0.0528 0.69 CD4_TEM L2
ENSG00000111142 METAP2 945624 sc-eQTL 2.82e-01 0.0951 0.0881 0.69 CD4_TEM L2
ENSG00000111144 LTA4H 375624 sc-eQTL 9.43e-01 -0.0058 0.0816 0.69 CD4_TEM L2
ENSG00000111145 ELK3 224769 sc-eQTL 9.26e-01 -0.00705 0.0758 0.69 CD4_TEM L2
ENSG00000136014 USP44 867668 sc-eQTL 6.06e-01 0.0481 0.0933 0.69 CD4_TEM L2
ENSG00000139343 SNRPF 560216 sc-eQTL 6.31e-01 -0.0382 0.0794 0.69 CD4_TEM L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 7.46e-01 -0.0306 0.0941 0.69 CD4_TEM L2
ENSG00000059758 CDK17 18664 sc-eQTL 9.68e-01 0.00209 0.0517 0.69 CD8_CTL L2
ENSG00000111142 METAP2 945624 sc-eQTL 4.17e-01 0.0726 0.0892 0.69 CD8_CTL L2
ENSG00000111144 LTA4H 375624 sc-eQTL 2.64e-01 -0.104 0.093 0.69 CD8_CTL L2
ENSG00000111145 ELK3 224769 sc-eQTL 5.00e-01 0.0574 0.0849 0.69 CD8_CTL L2
ENSG00000136014 USP44 867668 sc-eQTL 6.79e-01 -0.0392 0.0946 0.69 CD8_CTL L2
ENSG00000139343 SNRPF 560216 sc-eQTL 6.65e-01 0.0339 0.078 0.69 CD8_CTL L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 6.42e-01 -0.0407 0.0875 0.69 CD8_CTL L2
ENSG00000059758 CDK17 18664 sc-eQTL 2.73e-01 -0.0674 0.0614 0.69 CD8_Naive L2
ENSG00000111142 METAP2 945624 sc-eQTL 9.64e-01 -0.00365 0.0818 0.69 CD8_Naive L2
ENSG00000111144 LTA4H 375624 sc-eQTL 7.49e-01 0.0237 0.0737 0.69 CD8_Naive L2
ENSG00000111145 ELK3 224769 sc-eQTL 1.26e-01 -0.119 0.0776 0.69 CD8_Naive L2
ENSG00000136014 USP44 867668 sc-eQTL 9.82e-01 0.00186 0.0819 0.69 CD8_Naive L2
ENSG00000139343 SNRPF 560216 sc-eQTL 6.63e-01 0.0306 0.0701 0.69 CD8_Naive L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 8.82e-01 0.0124 0.0835 0.69 CD8_Naive L2
ENSG00000059758 CDK17 18664 sc-eQTL 5.80e-01 0.0368 0.0664 0.683 CD8_TCM L2
ENSG00000111142 METAP2 945624 sc-eQTL 3.81e-01 0.0869 0.099 0.683 CD8_TCM L2
ENSG00000111144 LTA4H 375624 sc-eQTL 4.72e-01 0.0703 0.0976 0.683 CD8_TCM L2
ENSG00000111145 ELK3 224769 sc-eQTL 3.56e-01 -0.0763 0.0825 0.683 CD8_TCM L2
ENSG00000136014 USP44 867668 sc-eQTL 2.79e-01 0.097 0.0893 0.683 CD8_TCM L2
ENSG00000139343 SNRPF 560216 sc-eQTL 9.07e-01 0.0111 0.0953 0.683 CD8_TCM L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 2.97e-01 -0.0972 0.093 0.683 CD8_TCM L2
ENSG00000059758 CDK17 18664 sc-eQTL 7.47e-01 -0.027 0.0837 0.694 CD8_TEM L2
ENSG00000111142 METAP2 945624 sc-eQTL 1.94e-01 0.127 0.0978 0.694 CD8_TEM L2
ENSG00000111144 LTA4H 375624 sc-eQTL 9.59e-01 -0.00526 0.102 0.694 CD8_TEM L2
ENSG00000111145 ELK3 224769 sc-eQTL 8.97e-01 -0.0131 0.101 0.694 CD8_TEM L2
ENSG00000136014 USP44 867668 sc-eQTL 1.27e-01 -0.131 0.0853 0.694 CD8_TEM L2
ENSG00000139343 SNRPF 560216 sc-eQTL 5.14e-01 0.0612 0.0935 0.694 CD8_TEM L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 2.27e-01 -0.123 0.101 0.694 CD8_TEM L2
ENSG00000059758 CDK17 18664 sc-eQTL 1.74e-01 -0.0749 0.0549 0.688 MAIT L2
ENSG00000074527 NTN4 627992 sc-eQTL 5.70e-01 -0.0422 0.0743 0.688 MAIT L2
ENSG00000111142 METAP2 945624 sc-eQTL 3.16e-01 0.0939 0.0934 0.688 MAIT L2
ENSG00000111144 LTA4H 375624 sc-eQTL 2.94e-01 0.0895 0.085 0.688 MAIT L2
ENSG00000111145 ELK3 224769 sc-eQTL 4.71e-01 -0.0516 0.0714 0.688 MAIT L2
ENSG00000139343 SNRPF 560216 sc-eQTL 5.15e-01 -0.0541 0.0828 0.688 MAIT L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 6.08e-01 -0.0478 0.093 0.688 MAIT L2
ENSG00000188596 CFAP54 -70427 sc-eQTL 8.43e-01 -0.0183 0.0922 0.688 MAIT L2
ENSG00000059758 CDK17 18664 sc-eQTL 4.20e-02 0.118 0.0576 0.693 NK_CD56bright L2
ENSG00000111142 METAP2 945624 sc-eQTL 4.44e-01 0.0753 0.0981 0.693 NK_CD56bright L2
ENSG00000111144 LTA4H 375624 sc-eQTL 3.82e-01 0.0753 0.086 0.693 NK_CD56bright L2
ENSG00000111145 ELK3 224769 sc-eQTL 3.13e-01 0.0923 0.0911 0.693 NK_CD56bright L2
ENSG00000139343 SNRPF 560216 sc-eQTL 8.04e-01 -0.0238 0.0956 0.693 NK_CD56bright L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 5.35e-01 -0.0599 0.0964 0.693 NK_CD56bright L2
ENSG00000059758 CDK17 18664 sc-eQTL 4.79e-02 0.0983 0.0494 0.694 NK_CD56dim L2
ENSG00000111142 METAP2 945624 sc-eQTL 5.42e-01 0.0534 0.0873 0.694 NK_CD56dim L2
ENSG00000111144 LTA4H 375624 sc-eQTL 9.40e-01 0.0068 0.0901 0.694 NK_CD56dim L2
ENSG00000111145 ELK3 224769 sc-eQTL 7.07e-01 -0.03 0.0798 0.694 NK_CD56dim L2
ENSG00000139343 SNRPF 560216 sc-eQTL 1.55e-01 -0.108 0.0756 0.694 NK_CD56dim L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 9.18e-01 0.00899 0.0874 0.694 NK_CD56dim L2
ENSG00000059758 CDK17 18664 sc-eQTL 1.59e-01 -0.11 0.0777 0.694 NK_HLA L2
ENSG00000111142 METAP2 945624 sc-eQTL 7.65e-01 0.0295 0.0984 0.694 NK_HLA L2
ENSG00000111144 LTA4H 375624 sc-eQTL 8.65e-02 -0.175 0.102 0.694 NK_HLA L2
ENSG00000111145 ELK3 224769 sc-eQTL 9.42e-01 -0.00696 0.095 0.694 NK_HLA L2
ENSG00000139343 SNRPF 560216 sc-eQTL 5.05e-01 -0.066 0.0989 0.694 NK_HLA L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 2.51e-01 -0.108 0.0933 0.694 NK_HLA L2
ENSG00000059758 CDK17 18664 sc-eQTL 3.76e-01 0.0481 0.0543 0.694 NK_cytokine L2
ENSG00000111142 METAP2 945624 sc-eQTL 6.92e-01 0.0359 0.0903 0.694 NK_cytokine L2
ENSG00000111144 LTA4H 375624 sc-eQTL 2.63e-01 -0.103 0.0917 0.694 NK_cytokine L2
ENSG00000111145 ELK3 224769 sc-eQTL 9.11e-01 -0.0099 0.088 0.694 NK_cytokine L2
ENSG00000139343 SNRPF 560216 sc-eQTL 8.89e-01 -0.0104 0.0746 0.694 NK_cytokine L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 3.55e-01 -0.0854 0.092 0.694 NK_cytokine L2
ENSG00000059758 CDK17 18664 sc-eQTL 3.16e-01 -0.11 0.11 0.704 PB L2
ENSG00000111142 METAP2 945624 sc-eQTL 2.00e-01 0.165 0.128 0.704 PB L2
ENSG00000111144 LTA4H 375624 sc-eQTL 5.44e-01 -0.059 0.0969 0.704 PB L2
ENSG00000111145 ELK3 224769 sc-eQTL 7.24e-01 0.0441 0.124 0.704 PB L2
ENSG00000136014 USP44 867668 sc-eQTL 4.07e-01 -0.0957 0.115 0.704 PB L2
ENSG00000139343 SNRPF 560216 sc-eQTL 4.62e-01 -0.0894 0.121 0.704 PB L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 4.01e-01 0.121 0.144 0.704 PB L2
ENSG00000059758 CDK17 18664 sc-eQTL 7.38e-01 -0.0205 0.061 0.691 Pro_T L2
ENSG00000074527 NTN4 627992 sc-eQTL 7.97e-01 -0.0176 0.0685 0.691 Pro_T L2
ENSG00000111142 METAP2 945624 sc-eQTL 4.85e-01 0.0566 0.0809 0.691 Pro_T L2
ENSG00000111144 LTA4H 375624 sc-eQTL 2.14e-01 -0.1 0.0803 0.691 Pro_T L2
ENSG00000111145 ELK3 224769 sc-eQTL 1.62e-01 -0.136 0.097 0.691 Pro_T L2
ENSG00000139343 SNRPF 560216 sc-eQTL 7.06e-01 0.0232 0.0615 0.691 Pro_T L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 2.36e-01 -0.106 0.089 0.691 Pro_T L2
ENSG00000188596 CFAP54 -70427 sc-eQTL 6.00e-01 -0.0379 0.0722 0.691 Pro_T L2
ENSG00000059758 CDK17 18664 sc-eQTL 4.21e-01 -0.0537 0.0666 0.69 Treg L2
ENSG00000111142 METAP2 945624 sc-eQTL 9.57e-01 -0.00492 0.0907 0.69 Treg L2
ENSG00000111144 LTA4H 375624 sc-eQTL 3.96e-01 0.0717 0.0843 0.69 Treg L2
ENSG00000111145 ELK3 224769 sc-eQTL 3.96e-01 -0.0649 0.0764 0.69 Treg L2
ENSG00000136014 USP44 867668 sc-eQTL 1.27e-01 0.131 0.0855 0.69 Treg L2
ENSG00000139343 SNRPF 560216 sc-eQTL 7.00e-01 0.0341 0.0886 0.69 Treg L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 9.33e-01 -0.00833 0.0989 0.69 Treg L2
ENSG00000059758 CDK17 18664 sc-eQTL 7.41e-01 -0.0273 0.0824 0.683 cDC L2
ENSG00000084110 HAL 422779 sc-eQTL 4.89e-01 0.0593 0.0856 0.683 cDC L2
ENSG00000111142 METAP2 945624 sc-eQTL 2.48e-01 0.12 0.103 0.683 cDC L2
ENSG00000111144 LTA4H 375624 sc-eQTL 4.82e-01 -0.0517 0.0734 0.683 cDC L2
ENSG00000111145 ELK3 224769 sc-eQTL 1.54e-01 0.138 0.0964 0.683 cDC L2
ENSG00000139343 SNRPF 560216 sc-eQTL 2.20e-01 -0.0994 0.0808 0.683 cDC L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 4.29e-01 0.0782 0.0987 0.683 cDC L2
ENSG00000257715 AC007298.1 393821 sc-eQTL 2.42e-01 -0.0976 0.0831 0.683 cDC L2
ENSG00000059758 CDK17 18664 sc-eQTL 3.05e-06 -0.329 0.0685 0.69 cMono_IL1B L2
ENSG00000084110 HAL 422779 sc-eQTL 3.87e-01 -0.0681 0.0785 0.69 cMono_IL1B L2
ENSG00000111142 METAP2 945624 sc-eQTL 3.17e-01 0.0817 0.0814 0.69 cMono_IL1B L2
ENSG00000111144 LTA4H 375624 sc-eQTL 2.56e-01 -0.0964 0.0847 0.69 cMono_IL1B L2
ENSG00000111145 ELK3 224769 sc-eQTL 8.23e-01 -0.0146 0.0655 0.69 cMono_IL1B L2
ENSG00000139343 SNRPF 560216 sc-eQTL 9.24e-01 -0.00648 0.0675 0.69 cMono_IL1B L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 6.19e-02 -0.173 0.0923 0.69 cMono_IL1B L2
ENSG00000257715 AC007298.1 393821 sc-eQTL 8.26e-01 0.0191 0.0868 0.69 cMono_IL1B L2
ENSG00000059758 CDK17 18664 sc-eQTL 7.81e-02 -0.144 0.0812 0.69 cMono_S100A L2
ENSG00000084110 HAL 422779 sc-eQTL 7.18e-01 0.0332 0.0918 0.69 cMono_S100A L2
ENSG00000111142 METAP2 945624 sc-eQTL 5.76e-01 0.052 0.0929 0.69 cMono_S100A L2
ENSG00000111144 LTA4H 375624 sc-eQTL 2.29e-01 -0.11 0.0914 0.69 cMono_S100A L2
ENSG00000111145 ELK3 224769 sc-eQTL 7.17e-01 0.0271 0.0747 0.69 cMono_S100A L2
ENSG00000139343 SNRPF 560216 sc-eQTL 2.54e-01 -0.0842 0.0736 0.69 cMono_S100A L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 1.86e-01 -0.132 0.0993 0.69 cMono_S100A L2
ENSG00000257715 AC007298.1 393821 sc-eQTL 5.09e-01 -0.062 0.0937 0.69 cMono_S100A L2
ENSG00000059758 CDK17 18664 sc-eQTL 1.73e-01 0.105 0.0765 0.679 gdT L2
ENSG00000074527 NTN4 627992 sc-eQTL 8.30e-01 -0.019 0.0883 0.679 gdT L2
ENSG00000111142 METAP2 945624 sc-eQTL 2.86e-01 0.118 0.11 0.679 gdT L2
ENSG00000111144 LTA4H 375624 sc-eQTL 2.34e-01 -0.137 0.115 0.679 gdT L2
ENSG00000111145 ELK3 224769 sc-eQTL 2.02e-01 0.136 0.106 0.679 gdT L2
ENSG00000139343 SNRPF 560216 sc-eQTL 6.68e-02 0.188 0.102 0.679 gdT L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 6.47e-01 0.0521 0.113 0.679 gdT L2
ENSG00000188596 CFAP54 -70427 sc-eQTL 4.21e-02 0.201 0.0981 0.679 gdT L2
ENSG00000059758 CDK17 18664 sc-eQTL 8.68e-01 0.0153 0.0915 0.689 intMono L2
ENSG00000084110 HAL 422779 sc-eQTL 9.28e-01 -0.00839 0.0926 0.689 intMono L2
ENSG00000111142 METAP2 945624 sc-eQTL 4.53e-01 -0.0787 0.105 0.689 intMono L2
ENSG00000111144 LTA4H 375624 sc-eQTL 8.77e-02 -0.162 0.0943 0.689 intMono L2
ENSG00000111145 ELK3 224769 sc-eQTL 9.26e-01 -0.00788 0.0846 0.689 intMono L2
ENSG00000139343 SNRPF 560216 sc-eQTL 1.85e-01 -0.12 0.09 0.689 intMono L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 9.57e-01 0.00501 0.0939 0.689 intMono L2
ENSG00000257715 AC007298.1 393821 sc-eQTL 7.70e-01 0.0277 0.0945 0.689 intMono L2
ENSG00000059758 CDK17 18664 sc-eQTL 6.91e-01 0.0298 0.075 0.695 ncMono L2
ENSG00000084110 HAL 422779 sc-eQTL 1.91e-01 -0.109 0.0834 0.695 ncMono L2
ENSG00000111142 METAP2 945624 sc-eQTL 5.02e-01 0.068 0.101 0.695 ncMono L2
ENSG00000111144 LTA4H 375624 sc-eQTL 2.32e-01 -0.112 0.093 0.695 ncMono L2
ENSG00000111145 ELK3 224769 sc-eQTL 7.54e-01 -0.0252 0.0801 0.695 ncMono L2
ENSG00000139343 SNRPF 560216 sc-eQTL 9.80e-01 -0.00203 0.0819 0.695 ncMono L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 2.43e-02 -0.195 0.0858 0.695 ncMono L2
ENSG00000257715 AC007298.1 393821 sc-eQTL 4.34e-01 -0.0777 0.0991 0.695 ncMono L2
ENSG00000059758 CDK17 18664 sc-eQTL 1.39e-02 -0.237 0.0954 0.675 pDC L2
ENSG00000084110 HAL 422779 sc-eQTL 7.24e-01 -0.029 0.0821 0.675 pDC L2
ENSG00000111142 METAP2 945624 sc-eQTL 9.03e-02 -0.187 0.11 0.675 pDC L2
ENSG00000111144 LTA4H 375624 sc-eQTL 6.01e-01 -0.0482 0.0918 0.675 pDC L2
ENSG00000111145 ELK3 224769 sc-eQTL 9.58e-01 0.00599 0.112 0.675 pDC L2
ENSG00000139343 SNRPF 560216 sc-eQTL 4.89e-01 0.068 0.098 0.675 pDC L2
ENSG00000139350 NEDD1 -488079 sc-eQTL 6.62e-01 0.0474 0.108 0.675 pDC L2
ENSG00000257715 AC007298.1 393821 sc-eQTL 9.75e-01 0.00286 0.0928 0.675 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 18664 sc-eQTL 1.74e-01 -0.0864 0.0632 0.69 B_Memory LOneK1K
ENSG00000111142 METAP2 945624 sc-eQTL 8.61e-01 -0.0155 0.0883 0.69 B_Memory LOneK1K
ENSG00000111144 LTA4H 375624 sc-eQTL 4.81e-01 -0.0465 0.0659 0.69 B_Memory LOneK1K
ENSG00000111145 ELK3 224769 sc-eQTL 1.71e-01 -0.103 0.0751 0.69 B_Memory LOneK1K
ENSG00000136014 USP44 867668 sc-eQTL 2.84e-01 -0.101 0.0937 0.69 B_Memory LOneK1K
ENSG00000139343 SNRPF 560216 sc-eQTL 4.56e-01 -0.0544 0.073 0.69 B_Memory LOneK1K
ENSG00000139350 NEDD1 -488079 sc-eQTL 8.71e-01 0.0156 0.0958 0.69 B_Memory LOneK1K
ENSG00000059758 CDK17 18664 sc-eQTL 2.87e-01 -0.0584 0.0547 0.69 B_Naive LOneK1K
ENSG00000111142 METAP2 945624 sc-eQTL 2.21e-01 0.0909 0.074 0.69 B_Naive LOneK1K
ENSG00000111144 LTA4H 375624 sc-eQTL 3.49e-01 -0.0577 0.0615 0.69 B_Naive LOneK1K
ENSG00000111145 ELK3 224769 sc-eQTL 2.77e-01 -0.0762 0.0699 0.69 B_Naive LOneK1K
ENSG00000136014 USP44 867668 sc-eQTL 3.40e-01 -0.0819 0.0856 0.69 B_Naive LOneK1K
ENSG00000139343 SNRPF 560216 sc-eQTL 5.52e-01 -0.042 0.0706 0.69 B_Naive LOneK1K
ENSG00000139350 NEDD1 -488079 sc-eQTL 4.14e-01 0.0764 0.0933 0.69 B_Naive LOneK1K
ENSG00000059758 CDK17 18664 sc-eQTL 1.72e-05 -0.275 0.0626 0.69 CD14_Mono LOneK1K
ENSG00000084110 HAL 422779 sc-eQTL 4.50e-01 -0.0599 0.0791 0.69 CD14_Mono LOneK1K
ENSG00000111142 METAP2 945624 sc-eQTL 6.06e-01 0.0386 0.0746 0.69 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 375624 sc-eQTL 3.26e-01 -0.0854 0.0868 0.69 CD14_Mono LOneK1K
ENSG00000111145 ELK3 224769 sc-eQTL 7.28e-01 0.0219 0.0628 0.69 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 560216 sc-eQTL 5.60e-01 -0.0354 0.0606 0.69 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -488079 sc-eQTL 7.49e-02 -0.169 0.0944 0.69 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 393821 sc-eQTL 7.98e-01 -0.0225 0.0881 0.69 CD14_Mono LOneK1K
ENSG00000059758 CDK17 18664 sc-eQTL 7.56e-01 0.0212 0.0681 0.694 CD16_Mono LOneK1K
ENSG00000084110 HAL 422779 sc-eQTL 3.87e-01 -0.0697 0.0804 0.694 CD16_Mono LOneK1K
ENSG00000111142 METAP2 945624 sc-eQTL 6.17e-01 -0.0457 0.0913 0.694 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 375624 sc-eQTL 1.39e-01 -0.132 0.0888 0.694 CD16_Mono LOneK1K
ENSG00000111145 ELK3 224769 sc-eQTL 5.91e-01 -0.0355 0.066 0.694 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 560216 sc-eQTL 7.26e-01 -0.0239 0.0681 0.694 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -488079 sc-eQTL 1.02e-01 -0.142 0.0868 0.694 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 393821 sc-eQTL 4.70e-01 -0.0669 0.0923 0.694 CD16_Mono LOneK1K
ENSG00000059758 CDK17 18664 sc-eQTL 3.19e-01 0.0464 0.0465 0.694 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 945624 sc-eQTL 8.71e-01 0.0115 0.071 0.694 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 375624 sc-eQTL 5.66e-01 -0.0466 0.0811 0.694 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 224769 sc-eQTL 7.51e-01 -0.0236 0.0742 0.694 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 560216 sc-eQTL 1.34e-01 -0.0951 0.0632 0.694 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -488079 sc-eQTL 5.11e-01 -0.0521 0.0791 0.694 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111145 ELK3 224769 eQTL 0.00101 -0.0582 0.0176 0.0 0.0 0.331
ENSG00000139344 AMDHD1 475813 eQTL 0.0366 -0.0713 0.0341 0.0 0.0 0.331
ENSG00000139350 NEDD1 -488079 eQTL 0.0113 -0.0623 0.0246 0.0 0.0 0.331
ENSG00000188596 CFAP54 -70431 eQTL 0.000919 -0.068 0.0204 0.00121 0.0 0.331

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000059758 \N 18664 1.72e-05 2.19e-05 3.01e-06 1.08e-05 2.85e-06 8.4e-06 2.38e-05 3.29e-06 1.8e-05 8.98e-06 2.38e-05 8.69e-06 3.19e-05 7.61e-06 5.16e-06 1.02e-05 8.8e-06 1.47e-05 4.54e-06 4.08e-06 8.21e-06 1.7e-05 1.74e-05 5.03e-06 2.89e-05 5.37e-06 8e-06 7.58e-06 1.72e-05 1.52e-05 1.29e-05 1.12e-06 1.43e-06 4.08e-06 7.79e-06 3.76e-06 1.84e-06 2.51e-06 2.7e-06 2.1e-06 1.08e-06 2.52e-05 2.64e-06 2.5e-07 1.35e-06 2.44e-06 2.6e-06 9.54e-07 6.27e-07
ENSG00000111145 ELK3 224769 2.14e-06 2.58e-06 3.12e-07 1.56e-06 3.48e-07 7.17e-07 1.31e-06 4.33e-07 1.71e-06 7.2e-07 1.83e-06 1.2e-06 2.9e-06 5.72e-07 4.89e-07 9.62e-07 1.04e-06 1.21e-06 7.14e-07 6.46e-07 7.86e-07 1.98e-06 1.33e-06 6.1e-07 2.73e-06 7.73e-07 1.06e-06 8.64e-07 1.69e-06 1.36e-06 7.49e-07 1.73e-07 2.33e-07 5.62e-07 9.13e-07 4.45e-07 6.69e-07 2.4e-07 4.53e-07 3.34e-07 2.85e-07 3.03e-06 4.34e-07 1.91e-07 2.95e-07 1.85e-07 2.29e-07 8.15e-08 1.06e-07
ENSG00000188596 CFAP54 -70431 6.16e-06 9.04e-06 8.95e-07 3.5e-06 1.43e-06 2.14e-06 8.05e-06 1.24e-06 4.76e-06 3.06e-06 9.14e-06 3.01e-06 1.04e-05 2.32e-06 1.04e-06 4.02e-06 1.97e-06 3.8e-06 1.55e-06 1.04e-06 2.73e-06 5.51e-06 4.85e-06 1.49e-06 9.65e-06 2.21e-06 2.33e-06 1.81e-06 4.66e-06 5.18e-06 3.74e-06 5.76e-07 7.1e-07 1.44e-06 2.44e-06 8.84e-07 9.76e-07 4.24e-07 9.29e-07 5.01e-07 2.37e-07 8.29e-06 6.74e-07 1.55e-07 3.43e-07 6.91e-07 9.5e-07 5.05e-07 1.94e-07