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Genes within 1Mb (chr12:96417600:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 17120 sc-eQTL 3.49e-01 -0.0479 0.0511 0.716 B L1
ENSG00000111142 METAP2 944080 sc-eQTL 6.81e-01 0.0298 0.0724 0.716 B L1
ENSG00000111144 LTA4H 374080 sc-eQTL 8.73e-01 0.0102 0.0636 0.716 B L1
ENSG00000111145 ELK3 223225 sc-eQTL 6.71e-01 -0.0288 0.0677 0.716 B L1
ENSG00000136014 USP44 866124 sc-eQTL 2.01e-01 -0.107 0.0831 0.716 B L1
ENSG00000139343 SNRPF 558672 sc-eQTL 2.31e-01 -0.0736 0.0613 0.716 B L1
ENSG00000139350 NEDD1 -489623 sc-eQTL 2.88e-01 0.0954 0.0895 0.716 B L1
ENSG00000059758 CDK17 17120 sc-eQTL 4.90e-01 -0.0291 0.0421 0.716 CD4T L1
ENSG00000111142 METAP2 944080 sc-eQTL 6.30e-01 -0.0284 0.0587 0.716 CD4T L1
ENSG00000111144 LTA4H 374080 sc-eQTL 3.43e-01 -0.0549 0.0577 0.716 CD4T L1
ENSG00000111145 ELK3 223225 sc-eQTL 9.52e-01 0.00379 0.0627 0.716 CD4T L1
ENSG00000136014 USP44 866124 sc-eQTL 7.74e-01 0.0257 0.0894 0.716 CD4T L1
ENSG00000139343 SNRPF 558672 sc-eQTL 8.35e-01 -0.0114 0.0548 0.716 CD4T L1
ENSG00000139350 NEDD1 -489623 sc-eQTL 5.43e-01 0.0411 0.0674 0.716 CD4T L1
ENSG00000059758 CDK17 17120 sc-eQTL 7.44e-02 -0.0767 0.0428 0.716 CD8T L1
ENSG00000111142 METAP2 944080 sc-eQTL 5.03e-01 0.0466 0.0694 0.716 CD8T L1
ENSG00000111144 LTA4H 374080 sc-eQTL 5.88e-01 -0.0251 0.0462 0.716 CD8T L1
ENSG00000111145 ELK3 223225 sc-eQTL 3.40e-02 -0.147 0.0689 0.716 CD8T L1
ENSG00000136014 USP44 866124 sc-eQTL 8.85e-01 0.0115 0.0792 0.716 CD8T L1
ENSG00000139343 SNRPF 558672 sc-eQTL 6.02e-01 0.0298 0.057 0.716 CD8T L1
ENSG00000139350 NEDD1 -489623 sc-eQTL 8.52e-01 -0.0142 0.0758 0.716 CD8T L1
ENSG00000059758 CDK17 17120 sc-eQTL 3.29e-01 -0.0798 0.0816 0.716 DC L1
ENSG00000084110 HAL 421235 sc-eQTL 4.48e-01 -0.0707 0.093 0.716 DC L1
ENSG00000111142 METAP2 944080 sc-eQTL 5.64e-01 -0.0593 0.103 0.716 DC L1
ENSG00000111144 LTA4H 374080 sc-eQTL 5.93e-01 -0.0408 0.0761 0.716 DC L1
ENSG00000111145 ELK3 223225 sc-eQTL 1.94e-01 0.121 0.0929 0.716 DC L1
ENSG00000139343 SNRPF 558672 sc-eQTL 6.44e-01 0.0359 0.0776 0.716 DC L1
ENSG00000139350 NEDD1 -489623 sc-eQTL 5.20e-01 0.0641 0.0995 0.716 DC L1
ENSG00000257715 AC007298.1 392277 sc-eQTL 1.59e-02 -0.216 0.0886 0.716 DC L1
ENSG00000059758 CDK17 17120 sc-eQTL 5.73e-03 -0.18 0.0645 0.716 Mono L1
ENSG00000084110 HAL 421235 sc-eQTL 6.40e-01 -0.0388 0.0828 0.716 Mono L1
ENSG00000111142 METAP2 944080 sc-eQTL 8.02e-01 0.0179 0.0715 0.716 Mono L1
ENSG00000111144 LTA4H 374080 sc-eQTL 6.55e-01 -0.0418 0.0934 0.716 Mono L1
ENSG00000111145 ELK3 223225 sc-eQTL 9.07e-01 0.00734 0.0628 0.716 Mono L1
ENSG00000139343 SNRPF 558672 sc-eQTL 6.77e-01 -0.0247 0.0592 0.716 Mono L1
ENSG00000139350 NEDD1 -489623 sc-eQTL 1.26e-02 -0.225 0.0896 0.716 Mono L1
ENSG00000257715 AC007298.1 392277 sc-eQTL 9.39e-01 -0.00675 0.0881 0.716 Mono L1
ENSG00000059758 CDK17 17120 sc-eQTL 1.92e-01 0.0627 0.0479 0.719 NK L1
ENSG00000111142 METAP2 944080 sc-eQTL 5.74e-01 -0.0401 0.0712 0.719 NK L1
ENSG00000111144 LTA4H 374080 sc-eQTL 8.29e-01 -0.0176 0.0817 0.719 NK L1
ENSG00000111145 ELK3 223225 sc-eQTL 8.87e-01 -0.011 0.0775 0.719 NK L1
ENSG00000139343 SNRPF 558672 sc-eQTL 1.69e-01 -0.0884 0.064 0.719 NK L1
ENSG00000139350 NEDD1 -489623 sc-eQTL 4.67e-01 -0.0592 0.0813 0.719 NK L1
ENSG00000059758 CDK17 17120 sc-eQTL 6.57e-01 0.0179 0.0403 0.716 Other_T L1
ENSG00000074527 NTN4 626448 sc-eQTL 3.33e-01 -0.0722 0.0744 0.716 Other_T L1
ENSG00000111142 METAP2 944080 sc-eQTL 4.04e-01 0.0643 0.0769 0.716 Other_T L1
ENSG00000111144 LTA4H 374080 sc-eQTL 5.43e-01 -0.0513 0.0842 0.716 Other_T L1
ENSG00000111145 ELK3 223225 sc-eQTL 7.85e-01 -0.018 0.0658 0.716 Other_T L1
ENSG00000139343 SNRPF 558672 sc-eQTL 9.83e-01 -0.00133 0.0611 0.716 Other_T L1
ENSG00000139350 NEDD1 -489623 sc-eQTL 3.50e-01 -0.0871 0.0929 0.716 Other_T L1
ENSG00000188596 CFAP54 -71971 sc-eQTL 4.42e-01 0.0741 0.0963 0.716 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 17120 sc-eQTL 7.06e-01 0.0338 0.0894 0.717 B_Activated L2
ENSG00000111142 METAP2 944080 sc-eQTL 2.72e-02 0.247 0.111 0.717 B_Activated L2
ENSG00000111144 LTA4H 374080 sc-eQTL 9.89e-01 0.00137 0.101 0.717 B_Activated L2
ENSG00000111145 ELK3 223225 sc-eQTL 6.93e-01 0.0423 0.107 0.717 B_Activated L2
ENSG00000136014 USP44 866124 sc-eQTL 4.68e-01 -0.0598 0.0822 0.717 B_Activated L2
ENSG00000139343 SNRPF 558672 sc-eQTL 5.64e-01 0.0584 0.101 0.717 B_Activated L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 5.89e-01 0.0571 0.106 0.717 B_Activated L2
ENSG00000059758 CDK17 17120 sc-eQTL 8.90e-01 0.011 0.0794 0.715 B_Intermediate L2
ENSG00000111142 METAP2 944080 sc-eQTL 2.90e-01 -0.0962 0.0908 0.715 B_Intermediate L2
ENSG00000111144 LTA4H 374080 sc-eQTL 8.26e-01 -0.0169 0.0769 0.715 B_Intermediate L2
ENSG00000111145 ELK3 223225 sc-eQTL 3.43e-01 -0.0822 0.0865 0.715 B_Intermediate L2
ENSG00000136014 USP44 866124 sc-eQTL 4.73e-01 -0.0733 0.102 0.715 B_Intermediate L2
ENSG00000139343 SNRPF 558672 sc-eQTL 4.05e-01 -0.0719 0.0862 0.715 B_Intermediate L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 7.77e-01 -0.0287 0.101 0.715 B_Intermediate L2
ENSG00000059758 CDK17 17120 sc-eQTL 1.23e-01 -0.118 0.0762 0.718 B_Memory L2
ENSG00000111142 METAP2 944080 sc-eQTL 7.10e-01 0.037 0.0996 0.718 B_Memory L2
ENSG00000111144 LTA4H 374080 sc-eQTL 3.29e-01 -0.0864 0.0882 0.718 B_Memory L2
ENSG00000111145 ELK3 223225 sc-eQTL 5.25e-01 -0.0553 0.0869 0.718 B_Memory L2
ENSG00000136014 USP44 866124 sc-eQTL 4.33e-01 -0.0749 0.0953 0.718 B_Memory L2
ENSG00000139343 SNRPF 558672 sc-eQTL 9.31e-01 0.00796 0.0921 0.718 B_Memory L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 3.97e-01 0.0864 0.102 0.718 B_Memory L2
ENSG00000059758 CDK17 17120 sc-eQTL 9.57e-01 0.00343 0.0642 0.716 B_Naive1 L2
ENSG00000111142 METAP2 944080 sc-eQTL 6.71e-01 0.0353 0.0831 0.716 B_Naive1 L2
ENSG00000111144 LTA4H 374080 sc-eQTL 6.62e-01 -0.0294 0.0673 0.716 B_Naive1 L2
ENSG00000111145 ELK3 223225 sc-eQTL 8.44e-01 -0.0157 0.0795 0.716 B_Naive1 L2
ENSG00000136014 USP44 866124 sc-eQTL 5.31e-01 -0.0627 0.0999 0.716 B_Naive1 L2
ENSG00000139343 SNRPF 558672 sc-eQTL 5.10e-01 0.051 0.0773 0.716 B_Naive1 L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 2.87e-01 0.106 0.099 0.716 B_Naive1 L2
ENSG00000059758 CDK17 17120 sc-eQTL 6.08e-01 -0.0414 0.0805 0.717 B_Naive2 L2
ENSG00000111142 METAP2 944080 sc-eQTL 5.15e-01 0.0634 0.0972 0.717 B_Naive2 L2
ENSG00000111144 LTA4H 374080 sc-eQTL 5.12e-01 -0.0501 0.0763 0.717 B_Naive2 L2
ENSG00000111145 ELK3 223225 sc-eQTL 9.06e-01 -0.0107 0.09 0.717 B_Naive2 L2
ENSG00000136014 USP44 866124 sc-eQTL 9.73e-01 0.00326 0.0972 0.717 B_Naive2 L2
ENSG00000139343 SNRPF 558672 sc-eQTL 4.10e-01 -0.0736 0.0892 0.717 B_Naive2 L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 4.56e-01 -0.0793 0.106 0.717 B_Naive2 L2
ENSG00000059758 CDK17 17120 sc-eQTL 1.94e-01 -0.0967 0.0742 0.709 CD4_CTL L2
ENSG00000111142 METAP2 944080 sc-eQTL 9.58e-01 -0.00567 0.107 0.709 CD4_CTL L2
ENSG00000111144 LTA4H 374080 sc-eQTL 4.69e-02 -0.208 0.104 0.709 CD4_CTL L2
ENSG00000111145 ELK3 223225 sc-eQTL 2.99e-02 0.23 0.105 0.709 CD4_CTL L2
ENSG00000136014 USP44 866124 sc-eQTL 5.31e-01 -0.0532 0.0848 0.709 CD4_CTL L2
ENSG00000139343 SNRPF 558672 sc-eQTL 5.24e-01 -0.059 0.0924 0.709 CD4_CTL L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 2.51e-01 -0.123 0.107 0.709 CD4_CTL L2
ENSG00000059758 CDK17 17120 sc-eQTL 7.86e-01 -0.0126 0.0462 0.716 CD4_Naive L2
ENSG00000111142 METAP2 944080 sc-eQTL 9.69e-01 -0.00262 0.0667 0.716 CD4_Naive L2
ENSG00000111144 LTA4H 374080 sc-eQTL 3.45e-01 -0.0631 0.0667 0.716 CD4_Naive L2
ENSG00000111145 ELK3 223225 sc-eQTL 6.93e-01 0.0264 0.0668 0.716 CD4_Naive L2
ENSG00000136014 USP44 866124 sc-eQTL 5.10e-01 0.0618 0.0936 0.716 CD4_Naive L2
ENSG00000139343 SNRPF 558672 sc-eQTL 8.21e-01 -0.0134 0.0594 0.716 CD4_Naive L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 9.19e-01 0.00744 0.0732 0.716 CD4_Naive L2
ENSG00000059758 CDK17 17120 sc-eQTL 6.80e-01 -0.0186 0.045 0.716 CD4_TCM L2
ENSG00000111142 METAP2 944080 sc-eQTL 2.45e-01 -0.089 0.0764 0.716 CD4_TCM L2
ENSG00000111144 LTA4H 374080 sc-eQTL 9.95e-01 -0.000447 0.0763 0.716 CD4_TCM L2
ENSG00000111145 ELK3 223225 sc-eQTL 1.15e-01 -0.118 0.0747 0.716 CD4_TCM L2
ENSG00000136014 USP44 866124 sc-eQTL 5.75e-01 0.0583 0.104 0.716 CD4_TCM L2
ENSG00000139343 SNRPF 558672 sc-eQTL 8.22e-01 0.0138 0.0616 0.716 CD4_TCM L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 7.11e-02 0.152 0.0835 0.716 CD4_TCM L2
ENSG00000059758 CDK17 17120 sc-eQTL 8.37e-01 0.0114 0.0554 0.716 CD4_TEM L2
ENSG00000111142 METAP2 944080 sc-eQTL 5.72e-01 0.0523 0.0925 0.716 CD4_TEM L2
ENSG00000111144 LTA4H 374080 sc-eQTL 5.02e-01 -0.0574 0.0854 0.716 CD4_TEM L2
ENSG00000111145 ELK3 223225 sc-eQTL 7.84e-01 0.0218 0.0794 0.716 CD4_TEM L2
ENSG00000136014 USP44 866124 sc-eQTL 5.86e-01 0.0533 0.0977 0.716 CD4_TEM L2
ENSG00000139343 SNRPF 558672 sc-eQTL 9.04e-01 -0.0101 0.0832 0.716 CD4_TEM L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 9.31e-01 -0.00856 0.0986 0.716 CD4_TEM L2
ENSG00000059758 CDK17 17120 sc-eQTL 1.00e+00 -1.22e-05 0.054 0.716 CD8_CTL L2
ENSG00000111142 METAP2 944080 sc-eQTL 7.80e-01 0.0262 0.0933 0.716 CD8_CTL L2
ENSG00000111144 LTA4H 374080 sc-eQTL 1.87e-01 -0.128 0.0971 0.716 CD8_CTL L2
ENSG00000111145 ELK3 223225 sc-eQTL 8.45e-01 0.0174 0.0888 0.716 CD8_CTL L2
ENSG00000136014 USP44 866124 sc-eQTL 9.91e-01 0.00116 0.099 0.716 CD8_CTL L2
ENSG00000139343 SNRPF 558672 sc-eQTL 7.94e-01 0.0213 0.0816 0.716 CD8_CTL L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 5.43e-01 -0.0558 0.0915 0.716 CD8_CTL L2
ENSG00000059758 CDK17 17120 sc-eQTL 1.74e-01 -0.0876 0.0642 0.716 CD8_Naive L2
ENSG00000111142 METAP2 944080 sc-eQTL 6.58e-01 -0.038 0.0857 0.716 CD8_Naive L2
ENSG00000111144 LTA4H 374080 sc-eQTL 8.88e-01 0.0109 0.0773 0.716 CD8_Naive L2
ENSG00000111145 ELK3 223225 sc-eQTL 4.75e-02 -0.161 0.081 0.716 CD8_Naive L2
ENSG00000136014 USP44 866124 sc-eQTL 9.88e-01 0.00134 0.0858 0.716 CD8_Naive L2
ENSG00000139343 SNRPF 558672 sc-eQTL 9.71e-01 0.00266 0.0735 0.716 CD8_Naive L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 5.66e-01 0.0503 0.0874 0.716 CD8_Naive L2
ENSG00000059758 CDK17 17120 sc-eQTL 9.94e-01 0.000538 0.0693 0.711 CD8_TCM L2
ENSG00000111142 METAP2 944080 sc-eQTL 3.78e-01 0.0912 0.103 0.711 CD8_TCM L2
ENSG00000111144 LTA4H 374080 sc-eQTL 1.00e-01 0.167 0.101 0.711 CD8_TCM L2
ENSG00000111145 ELK3 223225 sc-eQTL 3.66e-01 -0.078 0.086 0.711 CD8_TCM L2
ENSG00000136014 USP44 866124 sc-eQTL 4.83e-01 0.0656 0.0932 0.711 CD8_TCM L2
ENSG00000139343 SNRPF 558672 sc-eQTL 9.77e-01 -0.00284 0.0993 0.711 CD8_TCM L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 6.10e-01 -0.0497 0.0972 0.711 CD8_TCM L2
ENSG00000059758 CDK17 17120 sc-eQTL 9.98e-01 0.000193 0.0882 0.721 CD8_TEM L2
ENSG00000111142 METAP2 944080 sc-eQTL 9.09e-02 0.175 0.103 0.721 CD8_TEM L2
ENSG00000111144 LTA4H 374080 sc-eQTL 5.49e-01 0.0648 0.108 0.721 CD8_TEM L2
ENSG00000111145 ELK3 223225 sc-eQTL 6.65e-01 -0.0461 0.106 0.721 CD8_TEM L2
ENSG00000136014 USP44 866124 sc-eQTL 1.11e-01 -0.144 0.0898 0.721 CD8_TEM L2
ENSG00000139343 SNRPF 558672 sc-eQTL 6.88e-01 0.0396 0.0987 0.721 CD8_TEM L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 1.66e-01 -0.148 0.107 0.721 CD8_TEM L2
ENSG00000059758 CDK17 17120 sc-eQTL 2.13e-01 -0.0718 0.0575 0.714 MAIT L2
ENSG00000074527 NTN4 626448 sc-eQTL 9.14e-01 -0.00842 0.0778 0.714 MAIT L2
ENSG00000111142 METAP2 944080 sc-eQTL 2.18e-01 0.12 0.0975 0.714 MAIT L2
ENSG00000111144 LTA4H 374080 sc-eQTL 4.76e-01 0.0636 0.089 0.714 MAIT L2
ENSG00000111145 ELK3 223225 sc-eQTL 4.66e-01 -0.0545 0.0747 0.714 MAIT L2
ENSG00000139343 SNRPF 558672 sc-eQTL 6.46e-01 -0.0398 0.0866 0.714 MAIT L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 9.86e-01 0.00171 0.0973 0.714 MAIT L2
ENSG00000188596 CFAP54 -71971 sc-eQTL 8.78e-01 0.0149 0.0964 0.714 MAIT L2
ENSG00000059758 CDK17 17120 sc-eQTL 8.28e-02 0.106 0.0607 0.716 NK_CD56bright L2
ENSG00000111142 METAP2 944080 sc-eQTL 6.22e-01 0.0509 0.103 0.716 NK_CD56bright L2
ENSG00000111144 LTA4H 374080 sc-eQTL 1.96e-01 0.117 0.0902 0.716 NK_CD56bright L2
ENSG00000111145 ELK3 223225 sc-eQTL 2.72e-01 0.105 0.0958 0.716 NK_CD56bright L2
ENSG00000139343 SNRPF 558672 sc-eQTL 9.08e-01 -0.0117 0.1 0.716 NK_CD56bright L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 7.37e-01 -0.034 0.101 0.716 NK_CD56bright L2
ENSG00000059758 CDK17 17120 sc-eQTL 7.36e-02 0.0931 0.0518 0.718 NK_CD56dim L2
ENSG00000111142 METAP2 944080 sc-eQTL 9.27e-01 -0.00839 0.0914 0.718 NK_CD56dim L2
ENSG00000111144 LTA4H 374080 sc-eQTL 8.83e-01 -0.0139 0.0943 0.718 NK_CD56dim L2
ENSG00000111145 ELK3 223225 sc-eQTL 4.36e-01 -0.065 0.0833 0.718 NK_CD56dim L2
ENSG00000139343 SNRPF 558672 sc-eQTL 1.00e-01 -0.13 0.0789 0.718 NK_CD56dim L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 7.38e-01 0.0306 0.0915 0.718 NK_CD56dim L2
ENSG00000059758 CDK17 17120 sc-eQTL 1.31e-01 -0.122 0.0806 0.715 NK_HLA L2
ENSG00000111142 METAP2 944080 sc-eQTL 7.49e-01 -0.0328 0.102 0.715 NK_HLA L2
ENSG00000111144 LTA4H 374080 sc-eQTL 4.85e-02 -0.209 0.105 0.715 NK_HLA L2
ENSG00000111145 ELK3 223225 sc-eQTL 7.94e-01 -0.0258 0.0986 0.715 NK_HLA L2
ENSG00000139343 SNRPF 558672 sc-eQTL 7.26e-01 -0.0361 0.103 0.715 NK_HLA L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 1.90e-01 -0.127 0.0968 0.715 NK_HLA L2
ENSG00000059758 CDK17 17120 sc-eQTL 4.41e-01 0.0439 0.0569 0.718 NK_cytokine L2
ENSG00000111142 METAP2 944080 sc-eQTL 8.89e-01 0.0132 0.0946 0.718 NK_cytokine L2
ENSG00000111144 LTA4H 374080 sc-eQTL 3.67e-01 -0.0869 0.0961 0.718 NK_cytokine L2
ENSG00000111145 ELK3 223225 sc-eQTL 7.97e-01 0.0237 0.0922 0.718 NK_cytokine L2
ENSG00000139343 SNRPF 558672 sc-eQTL 5.23e-01 -0.0499 0.078 0.718 NK_cytokine L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 6.73e-01 -0.0408 0.0965 0.718 NK_cytokine L2
ENSG00000059758 CDK17 17120 sc-eQTL 1.10e-01 -0.187 0.116 0.73 PB L2
ENSG00000111142 METAP2 944080 sc-eQTL 1.38e-01 0.203 0.136 0.73 PB L2
ENSG00000111144 LTA4H 374080 sc-eQTL 5.19e-01 -0.067 0.104 0.73 PB L2
ENSG00000111145 ELK3 223225 sc-eQTL 8.90e-01 -0.0184 0.133 0.73 PB L2
ENSG00000136014 USP44 866124 sc-eQTL 3.46e-01 -0.116 0.123 0.73 PB L2
ENSG00000139343 SNRPF 558672 sc-eQTL 4.56e-01 -0.0967 0.129 0.73 PB L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 9.80e-01 -0.00392 0.154 0.73 PB L2
ENSG00000059758 CDK17 17120 sc-eQTL 8.30e-01 -0.0136 0.0631 0.715 Pro_T L2
ENSG00000074527 NTN4 626448 sc-eQTL 4.39e-01 -0.0549 0.0708 0.715 Pro_T L2
ENSG00000111142 METAP2 944080 sc-eQTL 8.51e-01 0.0158 0.0837 0.715 Pro_T L2
ENSG00000111144 LTA4H 374080 sc-eQTL 4.56e-01 -0.0621 0.0832 0.715 Pro_T L2
ENSG00000111145 ELK3 223225 sc-eQTL 1.01e-01 -0.165 0.1 0.715 Pro_T L2
ENSG00000139343 SNRPF 558672 sc-eQTL 4.28e-01 0.0504 0.0635 0.715 Pro_T L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 2.30e-01 -0.111 0.092 0.715 Pro_T L2
ENSG00000188596 CFAP54 -71971 sc-eQTL 6.39e-01 0.0351 0.0746 0.715 Pro_T L2
ENSG00000059758 CDK17 17120 sc-eQTL 8.20e-01 -0.016 0.07 0.716 Treg L2
ENSG00000111142 METAP2 944080 sc-eQTL 9.58e-01 0.00503 0.0953 0.716 Treg L2
ENSG00000111144 LTA4H 374080 sc-eQTL 9.28e-01 -0.00804 0.0887 0.716 Treg L2
ENSG00000111145 ELK3 223225 sc-eQTL 4.98e-01 -0.0545 0.0803 0.716 Treg L2
ENSG00000136014 USP44 866124 sc-eQTL 1.52e-01 0.129 0.0898 0.716 Treg L2
ENSG00000139343 SNRPF 558672 sc-eQTL 8.51e-01 0.0175 0.0931 0.716 Treg L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 9.65e-01 0.00454 0.104 0.716 Treg L2
ENSG00000059758 CDK17 17120 sc-eQTL 9.00e-01 -0.0109 0.0865 0.707 cDC L2
ENSG00000084110 HAL 421235 sc-eQTL 8.11e-01 0.0215 0.0899 0.707 cDC L2
ENSG00000111142 METAP2 944080 sc-eQTL 5.42e-01 0.0663 0.108 0.707 cDC L2
ENSG00000111144 LTA4H 374080 sc-eQTL 8.90e-01 -0.0107 0.077 0.707 cDC L2
ENSG00000111145 ELK3 223225 sc-eQTL 2.38e-01 0.12 0.101 0.707 cDC L2
ENSG00000139343 SNRPF 558672 sc-eQTL 2.63e-01 -0.0952 0.0848 0.707 cDC L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 3.34e-01 0.1 0.103 0.707 cDC L2
ENSG00000257715 AC007298.1 392277 sc-eQTL 1.52e-01 -0.125 0.0869 0.707 cDC L2
ENSG00000059758 CDK17 17120 sc-eQTL 5.30e-07 -0.367 0.0709 0.716 cMono_IL1B L2
ENSG00000084110 HAL 421235 sc-eQTL 5.81e-01 -0.0454 0.0821 0.716 cMono_IL1B L2
ENSG00000111142 METAP2 944080 sc-eQTL 5.08e-01 0.0564 0.0851 0.716 cMono_IL1B L2
ENSG00000111144 LTA4H 374080 sc-eQTL 7.20e-01 -0.0319 0.0887 0.716 cMono_IL1B L2
ENSG00000111145 ELK3 223225 sc-eQTL 6.81e-01 -0.0281 0.0683 0.716 cMono_IL1B L2
ENSG00000139343 SNRPF 558672 sc-eQTL 9.50e-01 0.00446 0.0705 0.716 cMono_IL1B L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 4.80e-02 -0.191 0.0962 0.716 cMono_IL1B L2
ENSG00000257715 AC007298.1 392277 sc-eQTL 5.66e-01 0.052 0.0905 0.716 cMono_IL1B L2
ENSG00000059758 CDK17 17120 sc-eQTL 3.70e-02 -0.178 0.0848 0.716 cMono_S100A L2
ENSG00000084110 HAL 421235 sc-eQTL 6.53e-01 0.0432 0.0961 0.716 cMono_S100A L2
ENSG00000111142 METAP2 944080 sc-eQTL 4.26e-01 0.0775 0.0972 0.716 cMono_S100A L2
ENSG00000111144 LTA4H 374080 sc-eQTL 7.12e-01 -0.0355 0.096 0.716 cMono_S100A L2
ENSG00000111145 ELK3 223225 sc-eQTL 5.35e-01 0.0486 0.0782 0.716 cMono_S100A L2
ENSG00000139343 SNRPF 558672 sc-eQTL 2.88e-01 -0.0822 0.0771 0.716 cMono_S100A L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 2.40e-01 -0.123 0.104 0.716 cMono_S100A L2
ENSG00000257715 AC007298.1 392277 sc-eQTL 8.12e-01 -0.0234 0.0982 0.716 cMono_S100A L2
ENSG00000059758 CDK17 17120 sc-eQTL 1.09e-01 0.129 0.0801 0.7 gdT L2
ENSG00000074527 NTN4 626448 sc-eQTL 7.71e-01 -0.027 0.0928 0.7 gdT L2
ENSG00000111142 METAP2 944080 sc-eQTL 2.79e-01 0.126 0.116 0.7 gdT L2
ENSG00000111144 LTA4H 374080 sc-eQTL 2.12e-01 -0.151 0.12 0.7 gdT L2
ENSG00000111145 ELK3 223225 sc-eQTL 2.44e-01 0.13 0.111 0.7 gdT L2
ENSG00000139343 SNRPF 558672 sc-eQTL 5.12e-02 0.21 0.107 0.7 gdT L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 9.03e-01 0.0146 0.119 0.7 gdT L2
ENSG00000188596 CFAP54 -71971 sc-eQTL 1.39e-01 0.154 0.104 0.7 gdT L2
ENSG00000059758 CDK17 17120 sc-eQTL 6.77e-01 0.0402 0.0962 0.716 intMono L2
ENSG00000084110 HAL 421235 sc-eQTL 9.34e-01 -0.00804 0.0973 0.716 intMono L2
ENSG00000111142 METAP2 944080 sc-eQTL 4.51e-01 -0.083 0.11 0.716 intMono L2
ENSG00000111144 LTA4H 374080 sc-eQTL 2.02e-01 -0.127 0.0994 0.716 intMono L2
ENSG00000111145 ELK3 223225 sc-eQTL 9.90e-01 0.0011 0.0889 0.716 intMono L2
ENSG00000139343 SNRPF 558672 sc-eQTL 2.53e-01 -0.109 0.0947 0.716 intMono L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 2.95e-01 -0.104 0.0985 0.716 intMono L2
ENSG00000257715 AC007298.1 392277 sc-eQTL 6.19e-01 0.0494 0.0993 0.716 intMono L2
ENSG00000059758 CDK17 17120 sc-eQTL 6.04e-01 0.0406 0.078 0.717 ncMono L2
ENSG00000084110 HAL 421235 sc-eQTL 2.75e-01 -0.0951 0.0869 0.717 ncMono L2
ENSG00000111142 METAP2 944080 sc-eQTL 3.12e-01 0.107 0.105 0.717 ncMono L2
ENSG00000111144 LTA4H 374080 sc-eQTL 3.10e-01 -0.0986 0.0969 0.717 ncMono L2
ENSG00000111145 ELK3 223225 sc-eQTL 8.79e-01 0.0127 0.0834 0.717 ncMono L2
ENSG00000139343 SNRPF 558672 sc-eQTL 5.81e-01 0.0471 0.0852 0.717 ncMono L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 1.22e-02 -0.225 0.0891 0.717 ncMono L2
ENSG00000257715 AC007298.1 392277 sc-eQTL 3.53e-01 -0.096 0.103 0.717 ncMono L2
ENSG00000059758 CDK17 17120 sc-eQTL 8.75e-02 -0.175 0.102 0.701 pDC L2
ENSG00000084110 HAL 421235 sc-eQTL 4.63e-01 -0.0638 0.0867 0.701 pDC L2
ENSG00000111142 METAP2 944080 sc-eQTL 1.57e-01 -0.166 0.117 0.701 pDC L2
ENSG00000111144 LTA4H 374080 sc-eQTL 6.12e-01 -0.0494 0.0971 0.701 pDC L2
ENSG00000111145 ELK3 223225 sc-eQTL 6.63e-01 0.0519 0.119 0.701 pDC L2
ENSG00000139343 SNRPF 558672 sc-eQTL 2.71e-01 0.114 0.103 0.701 pDC L2
ENSG00000139350 NEDD1 -489623 sc-eQTL 5.14e-01 0.0748 0.114 0.701 pDC L2
ENSG00000257715 AC007298.1 392277 sc-eQTL 4.93e-01 -0.0673 0.098 0.701 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 17120 sc-eQTL 4.80e-01 -0.0472 0.0667 0.716 B_Memory LOneK1K
ENSG00000111142 METAP2 944080 sc-eQTL 5.39e-01 -0.0571 0.0928 0.716 B_Memory LOneK1K
ENSG00000111144 LTA4H 374080 sc-eQTL 8.19e-01 -0.0159 0.0693 0.716 B_Memory LOneK1K
ENSG00000111145 ELK3 223225 sc-eQTL 3.57e-01 -0.0731 0.0791 0.716 B_Memory LOneK1K
ENSG00000136014 USP44 866124 sc-eQTL 2.47e-01 -0.114 0.0984 0.716 B_Memory LOneK1K
ENSG00000139343 SNRPF 558672 sc-eQTL 5.77e-01 -0.0429 0.0767 0.716 B_Memory LOneK1K
ENSG00000139350 NEDD1 -489623 sc-eQTL 5.26e-01 0.0639 0.101 0.716 B_Memory LOneK1K
ENSG00000059758 CDK17 17120 sc-eQTL 6.24e-01 -0.0282 0.0573 0.716 B_Naive LOneK1K
ENSG00000111142 METAP2 944080 sc-eQTL 3.85e-01 0.0675 0.0775 0.716 B_Naive LOneK1K
ENSG00000111144 LTA4H 374080 sc-eQTL 6.33e-01 -0.0308 0.0644 0.716 B_Naive LOneK1K
ENSG00000111145 ELK3 223225 sc-eQTL 4.64e-01 -0.0537 0.0732 0.716 B_Naive LOneK1K
ENSG00000136014 USP44 866124 sc-eQTL 7.04e-01 -0.0341 0.0896 0.716 B_Naive LOneK1K
ENSG00000139343 SNRPF 558672 sc-eQTL 4.97e-01 -0.0502 0.0738 0.716 B_Naive LOneK1K
ENSG00000139350 NEDD1 -489623 sc-eQTL 5.14e-01 0.0638 0.0976 0.716 B_Naive LOneK1K
ENSG00000059758 CDK17 17120 sc-eQTL 2.54e-06 -0.313 0.0648 0.716 CD14_Mono LOneK1K
ENSG00000084110 HAL 421235 sc-eQTL 7.03e-01 -0.0316 0.0827 0.716 CD14_Mono LOneK1K
ENSG00000111142 METAP2 944080 sc-eQTL 6.52e-01 0.0351 0.0779 0.716 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 374080 sc-eQTL 8.67e-01 -0.0153 0.0908 0.716 CD14_Mono LOneK1K
ENSG00000111145 ELK3 223225 sc-eQTL 7.65e-01 0.0196 0.0656 0.716 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 558672 sc-eQTL 6.74e-01 -0.0267 0.0633 0.716 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -489623 sc-eQTL 7.27e-02 -0.178 0.0985 0.716 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 392277 sc-eQTL 8.75e-01 0.0145 0.092 0.716 CD14_Mono LOneK1K
ENSG00000059758 CDK17 17120 sc-eQTL 6.70e-01 0.0304 0.0713 0.72 CD16_Mono LOneK1K
ENSG00000084110 HAL 421235 sc-eQTL 4.58e-01 -0.0625 0.0842 0.72 CD16_Mono LOneK1K
ENSG00000111142 METAP2 944080 sc-eQTL 7.59e-01 -0.0294 0.0956 0.72 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 374080 sc-eQTL 2.87e-01 -0.0996 0.0932 0.72 CD16_Mono LOneK1K
ENSG00000111145 ELK3 223225 sc-eQTL 7.10e-01 -0.0257 0.0691 0.72 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 558672 sc-eQTL 9.45e-01 -0.00495 0.0713 0.72 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -489623 sc-eQTL 1.38e-02 -0.224 0.0901 0.72 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 392277 sc-eQTL 5.50e-01 -0.0579 0.0967 0.72 CD16_Mono LOneK1K
ENSG00000059758 CDK17 17120 sc-eQTL 3.97e-01 0.0413 0.0487 0.718 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 944080 sc-eQTL 5.36e-01 -0.046 0.0741 0.718 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 374080 sc-eQTL 4.63e-01 -0.0622 0.0846 0.718 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 223225 sc-eQTL 6.60e-01 -0.0342 0.0775 0.718 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 558672 sc-eQTL 8.01e-02 -0.116 0.0659 0.718 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -489623 sc-eQTL 6.61e-01 -0.0363 0.0827 0.718 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000059758 \N 17120 3.32e-05 2.99e-05 5.43e-06 1.48e-05 5.58e-06 1.34e-05 3.81e-05 4.01e-06 2.72e-05 1.31e-05 3.38e-05 1.61e-05 4.07e-05 1.24e-05 6.2e-06 1.59e-05 1.42e-05 2.37e-05 6.95e-06 6.05e-06 1.26e-05 2.83e-05 2.78e-05 7.65e-06 3.96e-05 6.8e-06 1.26e-05 1.13e-05 2.78e-05 2.25e-05 1.7e-05 1.64e-06 2.29e-06 6.43e-06 1.05e-05 4.84e-06 2.76e-06 3.19e-06 3.71e-06 3.3e-06 1.72e-06 3.4e-05 3.39e-06 3.63e-07 2.26e-06 3.27e-06 3.96e-06 1.4e-06 1.55e-06
ENSG00000111145 \N 223225 4.2e-06 5.05e-06 8.15e-07 3.75e-06 1.47e-06 1.56e-06 4.13e-06 9.6e-07 4.91e-06 2.09e-06 5.17e-06 3.27e-06 6.98e-06 1.8e-06 1.35e-06 3.81e-06 1.83e-06 3.43e-06 1.39e-06 1.15e-06 2.16e-06 4.2e-06 3.78e-06 1.56e-06 5.93e-06 1.31e-06 2.42e-06 1.77e-06 4.18e-06 4.17e-06 2.19e-06 4.84e-07 4.91e-07 1.9e-06 2e-06 1.17e-06 1.09e-06 4.24e-07 9.29e-07 8.7e-07 4.36e-07 5.27e-06 6.47e-07 1.52e-07 3.69e-07 6.75e-07 7.28e-07 6.9e-07 5.8e-07
ENSG00000188596 \N -71975 1.13e-05 1.32e-05 2.18e-06 9.42e-06 2.27e-06 6.2e-06 1.44e-05 2.39e-06 1.41e-05 6.13e-06 1.66e-05 7.7e-06 2e-05 5.48e-06 3.67e-06 8.8e-06 5.45e-06 1.19e-05 2.97e-06 3.24e-06 6.18e-06 1.09e-05 1.12e-05 3.41e-06 2.14e-05 4.4e-06 7.69e-06 5.98e-06 1.27e-05 1.02e-05 7.11e-06 9.55e-07 1.23e-06 3.55e-06 5.89e-06 2.82e-06 1.75e-06 2.11e-06 2.15e-06 2.38e-06 9.4e-07 1.58e-05 2.15e-06 2.64e-07 8.1e-07 1.71e-06 2.04e-06 6.16e-07 8.01e-07
ENSG00000257715 \N 392277 1.35e-06 1.49e-06 2.19e-07 1.96e-06 4.51e-07 7.68e-07 1.27e-06 4.2e-07 1.75e-06 6.69e-07 1.95e-06 1.2e-06 2.64e-06 8.66e-07 3.64e-07 1.03e-06 9.34e-07 1.29e-06 5.52e-07 8.15e-07 7.61e-07 1.82e-06 1.38e-06 8.09e-07 2.33e-06 7.37e-07 1.15e-06 1.06e-06 1.6e-06 1.47e-06 8.18e-07 3.82e-07 3.35e-07 5.66e-07 9.04e-07 9.68e-07 8.33e-07 3.84e-07 5.97e-07 3.47e-07 3.56e-07 1.93e-06 6.18e-07 1.8e-07 3.58e-07 3.24e-07 2.42e-07 2.2e-07 1.58e-07