logo

Genes within 1Mb (chr12:96417587:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 17107 sc-eQTL 3.62e-01 -0.0467 0.0511 0.714 B L1
ENSG00000111142 METAP2 944067 sc-eQTL 7.10e-01 0.027 0.0724 0.714 B L1
ENSG00000111144 LTA4H 374067 sc-eQTL 9.24e-01 0.00607 0.0636 0.714 B L1
ENSG00000111145 ELK3 223212 sc-eQTL 6.87e-01 -0.0273 0.0677 0.714 B L1
ENSG00000136014 USP44 866111 sc-eQTL 1.49e-01 -0.12 0.0831 0.714 B L1
ENSG00000139343 SNRPF 558659 sc-eQTL 2.26e-01 -0.0745 0.0613 0.714 B L1
ENSG00000139350 NEDD1 -489636 sc-eQTL 2.91e-01 0.0947 0.0896 0.714 B L1
ENSG00000059758 CDK17 17107 sc-eQTL 5.88e-01 -0.0229 0.0421 0.714 CD4T L1
ENSG00000111142 METAP2 944067 sc-eQTL 7.35e-01 -0.02 0.0588 0.714 CD4T L1
ENSG00000111144 LTA4H 374067 sc-eQTL 3.97e-01 -0.049 0.0578 0.714 CD4T L1
ENSG00000111145 ELK3 223212 sc-eQTL 8.09e-01 0.0152 0.0627 0.714 CD4T L1
ENSG00000136014 USP44 866111 sc-eQTL 7.56e-01 0.0278 0.0895 0.714 CD4T L1
ENSG00000139343 SNRPF 558659 sc-eQTL 8.98e-01 -0.007 0.0548 0.714 CD4T L1
ENSG00000139350 NEDD1 -489636 sc-eQTL 6.36e-01 0.032 0.0675 0.714 CD4T L1
ENSG00000059758 CDK17 17107 sc-eQTL 1.01e-01 -0.0706 0.0428 0.714 CD8T L1
ENSG00000111142 METAP2 944067 sc-eQTL 4.13e-01 0.0569 0.0694 0.714 CD8T L1
ENSG00000111144 LTA4H 374067 sc-eQTL 6.53e-01 -0.0208 0.0462 0.714 CD8T L1
ENSG00000111145 ELK3 223212 sc-eQTL 5.18e-02 -0.135 0.069 0.714 CD8T L1
ENSG00000136014 USP44 866111 sc-eQTL 8.66e-01 0.0134 0.0792 0.714 CD8T L1
ENSG00000139343 SNRPF 558659 sc-eQTL 5.71e-01 0.0324 0.057 0.714 CD8T L1
ENSG00000139350 NEDD1 -489636 sc-eQTL 7.60e-01 -0.0232 0.0758 0.714 CD8T L1
ENSG00000059758 CDK17 17107 sc-eQTL 3.96e-01 -0.0696 0.0818 0.714 DC L1
ENSG00000084110 HAL 421222 sc-eQTL 4.88e-01 -0.0648 0.0931 0.714 DC L1
ENSG00000111142 METAP2 944067 sc-eQTL 5.67e-01 -0.0588 0.103 0.714 DC L1
ENSG00000111144 LTA4H 374067 sc-eQTL 4.68e-01 -0.0554 0.0762 0.714 DC L1
ENSG00000111145 ELK3 223212 sc-eQTL 1.81e-01 0.125 0.093 0.714 DC L1
ENSG00000139343 SNRPF 558659 sc-eQTL 6.18e-01 0.0388 0.0776 0.714 DC L1
ENSG00000139350 NEDD1 -489636 sc-eQTL 4.13e-01 0.0817 0.0995 0.714 DC L1
ENSG00000257715 AC007298.1 392264 sc-eQTL 9.99e-03 -0.23 0.0885 0.714 DC L1
ENSG00000059758 CDK17 17107 sc-eQTL 6.70e-03 -0.177 0.0645 0.714 Mono L1
ENSG00000084110 HAL 421222 sc-eQTL 5.96e-01 -0.0438 0.0826 0.714 Mono L1
ENSG00000111142 METAP2 944067 sc-eQTL 6.47e-01 0.0327 0.0714 0.714 Mono L1
ENSG00000111144 LTA4H 374067 sc-eQTL 5.81e-01 -0.0515 0.0933 0.714 Mono L1
ENSG00000111145 ELK3 223212 sc-eQTL 8.93e-01 0.00843 0.0627 0.714 Mono L1
ENSG00000139343 SNRPF 558659 sc-eQTL 6.88e-01 -0.0237 0.0591 0.714 Mono L1
ENSG00000139350 NEDD1 -489636 sc-eQTL 9.79e-03 -0.233 0.0893 0.714 Mono L1
ENSG00000257715 AC007298.1 392264 sc-eQTL 8.90e-01 -0.0121 0.0879 0.714 Mono L1
ENSG00000059758 CDK17 17107 sc-eQTL 2.11e-01 0.0601 0.048 0.717 NK L1
ENSG00000111142 METAP2 944067 sc-eQTL 5.70e-01 -0.0405 0.0712 0.717 NK L1
ENSG00000111144 LTA4H 374067 sc-eQTL 8.90e-01 -0.0113 0.0817 0.717 NK L1
ENSG00000111145 ELK3 223212 sc-eQTL 8.88e-01 -0.011 0.0775 0.717 NK L1
ENSG00000139343 SNRPF 558659 sc-eQTL 1.81e-01 -0.0858 0.064 0.717 NK L1
ENSG00000139350 NEDD1 -489636 sc-eQTL 4.75e-01 -0.0582 0.0813 0.717 NK L1
ENSG00000059758 CDK17 17107 sc-eQTL 6.39e-01 0.019 0.0404 0.714 Other_T L1
ENSG00000074527 NTN4 626435 sc-eQTL 3.28e-01 -0.0731 0.0746 0.714 Other_T L1
ENSG00000111142 METAP2 944067 sc-eQTL 4.59e-01 0.0572 0.077 0.714 Other_T L1
ENSG00000111144 LTA4H 374067 sc-eQTL 5.81e-01 -0.0466 0.0844 0.714 Other_T L1
ENSG00000111145 ELK3 223212 sc-eQTL 8.28e-01 -0.0144 0.0659 0.714 Other_T L1
ENSG00000139343 SNRPF 558659 sc-eQTL 9.25e-01 -0.00578 0.0613 0.714 Other_T L1
ENSG00000139350 NEDD1 -489636 sc-eQTL 3.49e-01 -0.0874 0.0931 0.714 Other_T L1
ENSG00000188596 CFAP54 -71984 sc-eQTL 4.53e-01 0.0725 0.0965 0.714 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 17107 sc-eQTL 8.72e-01 0.0144 0.0894 0.714 B_Activated L2
ENSG00000111142 METAP2 944067 sc-eQTL 3.84e-02 0.232 0.111 0.714 B_Activated L2
ENSG00000111144 LTA4H 374067 sc-eQTL 9.72e-01 -0.00354 0.101 0.714 B_Activated L2
ENSG00000111145 ELK3 223212 sc-eQTL 5.60e-01 0.0625 0.107 0.714 B_Activated L2
ENSG00000136014 USP44 866111 sc-eQTL 3.65e-01 -0.0747 0.0821 0.714 B_Activated L2
ENSG00000139343 SNRPF 558659 sc-eQTL 6.58e-01 0.0448 0.101 0.714 B_Activated L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 5.69e-01 0.0603 0.106 0.714 B_Activated L2
ENSG00000059758 CDK17 17107 sc-eQTL 8.63e-01 0.0137 0.0794 0.712 B_Intermediate L2
ENSG00000111142 METAP2 944067 sc-eQTL 2.76e-01 -0.0991 0.0908 0.712 B_Intermediate L2
ENSG00000111144 LTA4H 374067 sc-eQTL 7.93e-01 -0.0202 0.0769 0.712 B_Intermediate L2
ENSG00000111145 ELK3 223212 sc-eQTL 3.76e-01 -0.0768 0.0865 0.712 B_Intermediate L2
ENSG00000136014 USP44 866111 sc-eQTL 4.62e-01 -0.0752 0.102 0.712 B_Intermediate L2
ENSG00000139343 SNRPF 558659 sc-eQTL 4.24e-01 -0.0691 0.0862 0.712 B_Intermediate L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 7.86e-01 -0.0275 0.101 0.712 B_Intermediate L2
ENSG00000059758 CDK17 17107 sc-eQTL 1.43e-01 -0.112 0.0763 0.716 B_Memory L2
ENSG00000111142 METAP2 944067 sc-eQTL 6.30e-01 0.048 0.0996 0.716 B_Memory L2
ENSG00000111144 LTA4H 374067 sc-eQTL 2.78e-01 -0.0959 0.0883 0.716 B_Memory L2
ENSG00000111145 ELK3 223212 sc-eQTL 5.64e-01 -0.0502 0.0869 0.716 B_Memory L2
ENSG00000136014 USP44 866111 sc-eQTL 4.01e-01 -0.0803 0.0953 0.716 B_Memory L2
ENSG00000139343 SNRPF 558659 sc-eQTL 9.38e-01 0.00723 0.0922 0.716 B_Memory L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 3.78e-01 0.09 0.102 0.716 B_Memory L2
ENSG00000059758 CDK17 17107 sc-eQTL 9.93e-01 0.000588 0.0643 0.714 B_Naive1 L2
ENSG00000111142 METAP2 944067 sc-eQTL 7.28e-01 0.029 0.0831 0.714 B_Naive1 L2
ENSG00000111144 LTA4H 374067 sc-eQTL 5.97e-01 -0.0357 0.0673 0.714 B_Naive1 L2
ENSG00000111145 ELK3 223212 sc-eQTL 8.15e-01 -0.0186 0.0796 0.714 B_Naive1 L2
ENSG00000136014 USP44 866111 sc-eQTL 5.23e-01 -0.064 0.1 0.714 B_Naive1 L2
ENSG00000139343 SNRPF 558659 sc-eQTL 5.06e-01 0.0515 0.0773 0.714 B_Naive1 L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 3.71e-01 0.0888 0.0991 0.714 B_Naive1 L2
ENSG00000059758 CDK17 17107 sc-eQTL 6.05e-01 -0.0418 0.0806 0.715 B_Naive2 L2
ENSG00000111142 METAP2 944067 sc-eQTL 5.80e-01 0.054 0.0973 0.715 B_Naive2 L2
ENSG00000111144 LTA4H 374067 sc-eQTL 4.75e-01 -0.0546 0.0763 0.715 B_Naive2 L2
ENSG00000111145 ELK3 223212 sc-eQTL 7.94e-01 -0.0235 0.0901 0.715 B_Naive2 L2
ENSG00000136014 USP44 866111 sc-eQTL 8.60e-01 -0.0172 0.0973 0.715 B_Naive2 L2
ENSG00000139343 SNRPF 558659 sc-eQTL 3.70e-01 -0.0803 0.0893 0.715 B_Naive2 L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 4.95e-01 -0.0727 0.106 0.715 B_Naive2 L2
ENSG00000059758 CDK17 17107 sc-eQTL 1.58e-01 -0.105 0.0743 0.707 CD4_CTL L2
ENSG00000111142 METAP2 944067 sc-eQTL 7.93e-01 -0.0281 0.107 0.707 CD4_CTL L2
ENSG00000111144 LTA4H 374067 sc-eQTL 4.02e-02 -0.215 0.104 0.707 CD4_CTL L2
ENSG00000111145 ELK3 223212 sc-eQTL 3.56e-02 0.223 0.105 0.707 CD4_CTL L2
ENSG00000136014 USP44 866111 sc-eQTL 5.87e-01 -0.0463 0.085 0.707 CD4_CTL L2
ENSG00000139343 SNRPF 558659 sc-eQTL 4.81e-01 -0.0654 0.0926 0.707 CD4_CTL L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 2.50e-01 -0.123 0.107 0.707 CD4_CTL L2
ENSG00000059758 CDK17 17107 sc-eQTL 9.18e-01 -0.00475 0.0463 0.714 CD4_Naive L2
ENSG00000111142 METAP2 944067 sc-eQTL 9.29e-01 0.00594 0.0667 0.714 CD4_Naive L2
ENSG00000111144 LTA4H 374067 sc-eQTL 3.89e-01 -0.0576 0.0668 0.714 CD4_Naive L2
ENSG00000111145 ELK3 223212 sc-eQTL 6.00e-01 0.0351 0.0669 0.714 CD4_Naive L2
ENSG00000136014 USP44 866111 sc-eQTL 4.89e-01 0.0649 0.0937 0.714 CD4_Naive L2
ENSG00000139343 SNRPF 558659 sc-eQTL 8.52e-01 -0.0111 0.0595 0.714 CD4_Naive L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 9.61e-01 0.00358 0.0732 0.714 CD4_Naive L2
ENSG00000059758 CDK17 17107 sc-eQTL 7.37e-01 -0.0151 0.045 0.714 CD4_TCM L2
ENSG00000111142 METAP2 944067 sc-eQTL 2.49e-01 -0.0883 0.0764 0.714 CD4_TCM L2
ENSG00000111144 LTA4H 374067 sc-eQTL 9.73e-01 -0.0026 0.0763 0.714 CD4_TCM L2
ENSG00000111145 ELK3 223212 sc-eQTL 1.78e-01 -0.101 0.0748 0.714 CD4_TCM L2
ENSG00000136014 USP44 866111 sc-eQTL 6.84e-01 0.0423 0.104 0.714 CD4_TCM L2
ENSG00000139343 SNRPF 558659 sc-eQTL 7.58e-01 0.019 0.0616 0.714 CD4_TCM L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 9.57e-02 0.14 0.0836 0.714 CD4_TCM L2
ENSG00000059758 CDK17 17107 sc-eQTL 8.62e-01 0.00966 0.0554 0.714 CD4_TEM L2
ENSG00000111142 METAP2 944067 sc-eQTL 4.52e-01 0.0697 0.0924 0.714 CD4_TEM L2
ENSG00000111144 LTA4H 374067 sc-eQTL 6.10e-01 -0.0436 0.0855 0.714 CD4_TEM L2
ENSG00000111145 ELK3 223212 sc-eQTL 6.84e-01 0.0323 0.0794 0.714 CD4_TEM L2
ENSG00000136014 USP44 866111 sc-eQTL 5.92e-01 0.0525 0.0977 0.714 CD4_TEM L2
ENSG00000139343 SNRPF 558659 sc-eQTL 9.25e-01 -0.00779 0.0832 0.714 CD4_TEM L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 8.38e-01 -0.0202 0.0986 0.714 CD4_TEM L2
ENSG00000059758 CDK17 17107 sc-eQTL 9.86e-01 0.000966 0.054 0.714 CD8_CTL L2
ENSG00000111142 METAP2 944067 sc-eQTL 8.43e-01 0.0185 0.0933 0.714 CD8_CTL L2
ENSG00000111144 LTA4H 374067 sc-eQTL 1.27e-01 -0.149 0.0969 0.714 CD8_CTL L2
ENSG00000111145 ELK3 223212 sc-eQTL 8.26e-01 0.0195 0.0887 0.714 CD8_CTL L2
ENSG00000136014 USP44 866111 sc-eQTL 8.30e-01 0.0212 0.0988 0.714 CD8_CTL L2
ENSG00000139343 SNRPF 558659 sc-eQTL 9.82e-01 -0.00181 0.0815 0.714 CD8_CTL L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 6.88e-01 -0.0367 0.0914 0.714 CD8_CTL L2
ENSG00000059758 CDK17 17107 sc-eQTL 2.11e-01 -0.0807 0.0643 0.714 CD8_Naive L2
ENSG00000111142 METAP2 944067 sc-eQTL 7.40e-01 -0.0285 0.0858 0.714 CD8_Naive L2
ENSG00000111144 LTA4H 374067 sc-eQTL 8.19e-01 0.0178 0.0773 0.714 CD8_Naive L2
ENSG00000111145 ELK3 223212 sc-eQTL 6.65e-02 -0.15 0.0811 0.714 CD8_Naive L2
ENSG00000136014 USP44 866111 sc-eQTL 9.71e-01 0.00312 0.0859 0.714 CD8_Naive L2
ENSG00000139343 SNRPF 558659 sc-eQTL 9.01e-01 0.00917 0.0735 0.714 CD8_Naive L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 6.37e-01 0.0414 0.0875 0.714 CD8_Naive L2
ENSG00000059758 CDK17 17107 sc-eQTL 8.55e-01 0.0127 0.0693 0.708 CD8_TCM L2
ENSG00000111142 METAP2 944067 sc-eQTL 3.88e-01 0.0893 0.103 0.708 CD8_TCM L2
ENSG00000111144 LTA4H 374067 sc-eQTL 1.20e-01 0.158 0.101 0.708 CD8_TCM L2
ENSG00000111145 ELK3 223212 sc-eQTL 3.41e-01 -0.0822 0.0861 0.708 CD8_TCM L2
ENSG00000136014 USP44 866111 sc-eQTL 6.66e-01 0.0403 0.0934 0.708 CD8_TCM L2
ENSG00000139343 SNRPF 558659 sc-eQTL 9.88e-01 -0.00153 0.0994 0.708 CD8_TCM L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 5.35e-01 -0.0604 0.0972 0.708 CD8_TCM L2
ENSG00000059758 CDK17 17107 sc-eQTL 9.48e-01 -0.00572 0.0884 0.719 CD8_TEM L2
ENSG00000111142 METAP2 944067 sc-eQTL 1.13e-01 0.164 0.103 0.719 CD8_TEM L2
ENSG00000111144 LTA4H 374067 sc-eQTL 6.06e-01 0.056 0.108 0.719 CD8_TEM L2
ENSG00000111145 ELK3 223212 sc-eQTL 8.05e-01 -0.0263 0.106 0.719 CD8_TEM L2
ENSG00000136014 USP44 866111 sc-eQTL 1.27e-01 -0.138 0.0901 0.719 CD8_TEM L2
ENSG00000139343 SNRPF 558659 sc-eQTL 7.62e-01 0.03 0.0989 0.719 CD8_TEM L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 1.88e-01 -0.141 0.107 0.719 CD8_TEM L2
ENSG00000059758 CDK17 17107 sc-eQTL 1.97e-01 -0.0744 0.0575 0.712 MAIT L2
ENSG00000074527 NTN4 626435 sc-eQTL 9.29e-01 -0.00694 0.0778 0.712 MAIT L2
ENSG00000111142 METAP2 944067 sc-eQTL 2.43e-01 0.114 0.0976 0.712 MAIT L2
ENSG00000111144 LTA4H 374067 sc-eQTL 4.17e-01 0.0724 0.089 0.712 MAIT L2
ENSG00000111145 ELK3 223212 sc-eQTL 5.38e-01 -0.0461 0.0748 0.712 MAIT L2
ENSG00000139343 SNRPF 558659 sc-eQTL 6.63e-01 -0.0378 0.0867 0.712 MAIT L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 9.60e-01 -0.00493 0.0974 0.712 MAIT L2
ENSG00000188596 CFAP54 -71984 sc-eQTL 9.31e-01 0.00842 0.0965 0.712 MAIT L2
ENSG00000059758 CDK17 17107 sc-eQTL 1.02e-01 0.1 0.0608 0.713 NK_CD56bright L2
ENSG00000111142 METAP2 944067 sc-eQTL 7.16e-01 0.0376 0.103 0.713 NK_CD56bright L2
ENSG00000111144 LTA4H 374067 sc-eQTL 2.05e-01 0.115 0.0902 0.713 NK_CD56bright L2
ENSG00000111145 ELK3 223212 sc-eQTL 2.61e-01 0.108 0.0958 0.713 NK_CD56bright L2
ENSG00000139343 SNRPF 558659 sc-eQTL 9.32e-01 -0.00863 0.101 0.713 NK_CD56bright L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 7.29e-01 -0.0353 0.101 0.713 NK_CD56bright L2
ENSG00000059758 CDK17 17107 sc-eQTL 5.84e-02 0.0985 0.0517 0.716 NK_CD56dim L2
ENSG00000111142 METAP2 944067 sc-eQTL 9.80e-01 -0.0023 0.0915 0.716 NK_CD56dim L2
ENSG00000111144 LTA4H 374067 sc-eQTL 9.79e-01 0.00246 0.0943 0.716 NK_CD56dim L2
ENSG00000111145 ELK3 223212 sc-eQTL 4.06e-01 -0.0693 0.0833 0.716 NK_CD56dim L2
ENSG00000139343 SNRPF 558659 sc-eQTL 1.07e-01 -0.128 0.079 0.716 NK_CD56dim L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 6.66e-01 0.0396 0.0915 0.716 NK_CD56dim L2
ENSG00000059758 CDK17 17107 sc-eQTL 9.91e-02 -0.134 0.0807 0.712 NK_HLA L2
ENSG00000111142 METAP2 944067 sc-eQTL 8.40e-01 -0.0206 0.102 0.712 NK_HLA L2
ENSG00000111144 LTA4H 374067 sc-eQTL 3.65e-02 -0.222 0.105 0.712 NK_HLA L2
ENSG00000111145 ELK3 223212 sc-eQTL 7.95e-01 -0.0257 0.0988 0.712 NK_HLA L2
ENSG00000139343 SNRPF 558659 sc-eQTL 6.39e-01 -0.0484 0.103 0.712 NK_HLA L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 2.02e-01 -0.124 0.0971 0.712 NK_HLA L2
ENSG00000059758 CDK17 17107 sc-eQTL 4.69e-01 0.0413 0.057 0.716 NK_cytokine L2
ENSG00000111142 METAP2 944067 sc-eQTL 9.16e-01 0.00998 0.0947 0.716 NK_cytokine L2
ENSG00000111144 LTA4H 374067 sc-eQTL 3.83e-01 -0.0842 0.0962 0.716 NK_cytokine L2
ENSG00000111145 ELK3 223212 sc-eQTL 7.55e-01 0.0288 0.0923 0.716 NK_cytokine L2
ENSG00000139343 SNRPF 558659 sc-eQTL 5.43e-01 -0.0476 0.0781 0.716 NK_cytokine L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 6.17e-01 -0.0484 0.0966 0.716 NK_cytokine L2
ENSG00000059758 CDK17 17107 sc-eQTL 2.59e-01 -0.132 0.117 0.726 PB L2
ENSG00000111142 METAP2 944067 sc-eQTL 7.40e-02 0.244 0.135 0.726 PB L2
ENSG00000111144 LTA4H 374067 sc-eQTL 4.23e-01 -0.0831 0.103 0.726 PB L2
ENSG00000111145 ELK3 223212 sc-eQTL 8.39e-01 -0.0271 0.133 0.726 PB L2
ENSG00000136014 USP44 866111 sc-eQTL 3.99e-01 -0.104 0.123 0.726 PB L2
ENSG00000139343 SNRPF 558659 sc-eQTL 2.46e-01 -0.15 0.129 0.726 PB L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 7.12e-01 0.057 0.154 0.726 PB L2
ENSG00000059758 CDK17 17107 sc-eQTL 9.58e-01 -0.00332 0.0632 0.713 Pro_T L2
ENSG00000074527 NTN4 626435 sc-eQTL 4.56e-01 -0.053 0.0709 0.713 Pro_T L2
ENSG00000111142 METAP2 944067 sc-eQTL 9.35e-01 0.00687 0.0839 0.713 Pro_T L2
ENSG00000111144 LTA4H 374067 sc-eQTL 4.14e-01 -0.0683 0.0834 0.713 Pro_T L2
ENSG00000111145 ELK3 223212 sc-eQTL 8.84e-02 -0.172 0.1 0.713 Pro_T L2
ENSG00000139343 SNRPF 558659 sc-eQTL 5.29e-01 0.0401 0.0636 0.713 Pro_T L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 2.47e-01 -0.107 0.0922 0.713 Pro_T L2
ENSG00000188596 CFAP54 -71984 sc-eQTL 5.63e-01 0.0433 0.0748 0.713 Pro_T L2
ENSG00000059758 CDK17 17107 sc-eQTL 8.57e-01 -0.0126 0.0701 0.714 Treg L2
ENSG00000111142 METAP2 944067 sc-eQTL 8.79e-01 0.0145 0.0954 0.714 Treg L2
ENSG00000111144 LTA4H 374067 sc-eQTL 9.14e-01 -0.00957 0.0888 0.714 Treg L2
ENSG00000111145 ELK3 223212 sc-eQTL 5.97e-01 -0.0426 0.0804 0.714 Treg L2
ENSG00000136014 USP44 866111 sc-eQTL 1.84e-01 0.12 0.0899 0.714 Treg L2
ENSG00000139343 SNRPF 558659 sc-eQTL 8.72e-01 0.015 0.0931 0.714 Treg L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 9.34e-01 -0.00862 0.104 0.714 Treg L2
ENSG00000059758 CDK17 17107 sc-eQTL 9.77e-01 0.00248 0.0865 0.705 cDC L2
ENSG00000084110 HAL 421222 sc-eQTL 7.71e-01 0.0262 0.0899 0.705 cDC L2
ENSG00000111142 METAP2 944067 sc-eQTL 4.83e-01 0.0763 0.108 0.705 cDC L2
ENSG00000111144 LTA4H 374067 sc-eQTL 7.83e-01 -0.0213 0.0771 0.705 cDC L2
ENSG00000111145 ELK3 223212 sc-eQTL 2.34e-01 0.121 0.101 0.705 cDC L2
ENSG00000139343 SNRPF 558659 sc-eQTL 2.50e-01 -0.098 0.0849 0.705 cDC L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 2.64e-01 0.116 0.103 0.705 cDC L2
ENSG00000257715 AC007298.1 392264 sc-eQTL 2.09e-01 -0.11 0.0871 0.705 cDC L2
ENSG00000059758 CDK17 17107 sc-eQTL 9.10e-07 -0.36 0.0711 0.714 cMono_IL1B L2
ENSG00000084110 HAL 421222 sc-eQTL 5.90e-01 -0.0443 0.0821 0.714 cMono_IL1B L2
ENSG00000111142 METAP2 944067 sc-eQTL 4.91e-01 0.0587 0.0851 0.714 cMono_IL1B L2
ENSG00000111144 LTA4H 374067 sc-eQTL 6.57e-01 -0.0394 0.0887 0.714 cMono_IL1B L2
ENSG00000111145 ELK3 223212 sc-eQTL 6.70e-01 -0.0292 0.0683 0.714 cMono_IL1B L2
ENSG00000139343 SNRPF 558659 sc-eQTL 9.34e-01 0.00582 0.0705 0.714 cMono_IL1B L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 3.73e-02 -0.201 0.0961 0.714 cMono_IL1B L2
ENSG00000257715 AC007298.1 392264 sc-eQTL 5.90e-01 0.0489 0.0906 0.714 cMono_IL1B L2
ENSG00000059758 CDK17 17107 sc-eQTL 4.43e-02 -0.172 0.0849 0.714 cMono_S100A L2
ENSG00000084110 HAL 421222 sc-eQTL 8.45e-01 0.0188 0.0962 0.714 cMono_S100A L2
ENSG00000111142 METAP2 944067 sc-eQTL 3.28e-01 0.0953 0.0972 0.714 cMono_S100A L2
ENSG00000111144 LTA4H 374067 sc-eQTL 7.01e-01 -0.0369 0.0961 0.714 cMono_S100A L2
ENSG00000111145 ELK3 223212 sc-eQTL 5.33e-01 0.0489 0.0782 0.714 cMono_S100A L2
ENSG00000139343 SNRPF 558659 sc-eQTL 3.27e-01 -0.0759 0.0772 0.714 cMono_S100A L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 2.15e-01 -0.129 0.104 0.714 cMono_S100A L2
ENSG00000257715 AC007298.1 392264 sc-eQTL 8.33e-01 -0.0208 0.0983 0.714 cMono_S100A L2
ENSG00000059758 CDK17 17107 sc-eQTL 1.26e-01 0.124 0.0804 0.697 gdT L2
ENSG00000074527 NTN4 626435 sc-eQTL 8.11e-01 -0.0223 0.093 0.697 gdT L2
ENSG00000111142 METAP2 944067 sc-eQTL 1.94e-01 0.151 0.116 0.697 gdT L2
ENSG00000111144 LTA4H 374067 sc-eQTL 2.25e-01 -0.147 0.121 0.697 gdT L2
ENSG00000111145 ELK3 223212 sc-eQTL 2.93e-01 0.118 0.112 0.697 gdT L2
ENSG00000139343 SNRPF 558659 sc-eQTL 9.08e-02 0.183 0.107 0.697 gdT L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 6.97e-01 0.0466 0.12 0.697 gdT L2
ENSG00000188596 CFAP54 -71984 sc-eQTL 1.14e-01 0.165 0.104 0.697 gdT L2
ENSG00000059758 CDK17 17107 sc-eQTL 6.07e-01 0.0494 0.0961 0.713 intMono L2
ENSG00000084110 HAL 421222 sc-eQTL 8.51e-01 -0.0183 0.0972 0.713 intMono L2
ENSG00000111142 METAP2 944067 sc-eQTL 5.10e-01 -0.0726 0.11 0.713 intMono L2
ENSG00000111144 LTA4H 374067 sc-eQTL 1.94e-01 -0.129 0.0993 0.713 intMono L2
ENSG00000111145 ELK3 223212 sc-eQTL 9.85e-01 0.00167 0.0888 0.713 intMono L2
ENSG00000139343 SNRPF 558659 sc-eQTL 2.70e-01 -0.105 0.0946 0.713 intMono L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 3.12e-01 -0.0997 0.0984 0.713 intMono L2
ENSG00000257715 AC007298.1 392264 sc-eQTL 7.08e-01 0.0372 0.0992 0.713 intMono L2
ENSG00000059758 CDK17 17107 sc-eQTL 6.60e-01 0.0344 0.0781 0.715 ncMono L2
ENSG00000084110 HAL 421222 sc-eQTL 2.78e-01 -0.0945 0.0869 0.715 ncMono L2
ENSG00000111142 METAP2 944067 sc-eQTL 2.81e-01 0.114 0.105 0.715 ncMono L2
ENSG00000111144 LTA4H 374067 sc-eQTL 2.68e-01 -0.108 0.0969 0.715 ncMono L2
ENSG00000111145 ELK3 223212 sc-eQTL 8.72e-01 0.0135 0.0835 0.715 ncMono L2
ENSG00000139343 SNRPF 558659 sc-eQTL 5.97e-01 0.0451 0.0852 0.715 ncMono L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 1.08e-02 -0.229 0.0891 0.715 ncMono L2
ENSG00000257715 AC007298.1 392264 sc-eQTL 3.47e-01 -0.0971 0.103 0.715 ncMono L2
ENSG00000059758 CDK17 17107 sc-eQTL 1.05e-01 -0.167 0.102 0.698 pDC L2
ENSG00000084110 HAL 421222 sc-eQTL 4.55e-01 -0.0651 0.0869 0.698 pDC L2
ENSG00000111142 METAP2 944067 sc-eQTL 1.03e-01 -0.191 0.117 0.698 pDC L2
ENSG00000111144 LTA4H 374067 sc-eQTL 4.27e-01 -0.0775 0.0973 0.698 pDC L2
ENSG00000111145 ELK3 223212 sc-eQTL 6.52e-01 0.0538 0.119 0.698 pDC L2
ENSG00000139343 SNRPF 558659 sc-eQTL 2.16e-01 0.129 0.104 0.698 pDC L2
ENSG00000139350 NEDD1 -489636 sc-eQTL 4.50e-01 0.0868 0.115 0.698 pDC L2
ENSG00000257715 AC007298.1 392264 sc-eQTL 2.74e-01 -0.108 0.098 0.698 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 17107 sc-eQTL 4.94e-01 -0.0457 0.0667 0.714 B_Memory LOneK1K
ENSG00000111142 METAP2 944067 sc-eQTL 5.45e-01 -0.0563 0.0928 0.714 B_Memory LOneK1K
ENSG00000111144 LTA4H 374067 sc-eQTL 7.60e-01 -0.0212 0.0693 0.714 B_Memory LOneK1K
ENSG00000111145 ELK3 223212 sc-eQTL 4.32e-01 -0.0623 0.0791 0.714 B_Memory LOneK1K
ENSG00000136014 USP44 866111 sc-eQTL 2.23e-01 -0.12 0.0984 0.714 B_Memory LOneK1K
ENSG00000139343 SNRPF 558659 sc-eQTL 5.73e-01 -0.0433 0.0767 0.714 B_Memory LOneK1K
ENSG00000139350 NEDD1 -489636 sc-eQTL 5.16e-01 0.0654 0.101 0.714 B_Memory LOneK1K
ENSG00000059758 CDK17 17107 sc-eQTL 5.79e-01 -0.0319 0.0574 0.714 B_Naive LOneK1K
ENSG00000111142 METAP2 944067 sc-eQTL 4.46e-01 0.0592 0.0776 0.714 B_Naive LOneK1K
ENSG00000111144 LTA4H 374067 sc-eQTL 5.64e-01 -0.0372 0.0644 0.714 B_Naive LOneK1K
ENSG00000111145 ELK3 223212 sc-eQTL 3.91e-01 -0.0629 0.0732 0.714 B_Naive LOneK1K
ENSG00000136014 USP44 866111 sc-eQTL 5.78e-01 -0.05 0.0896 0.714 B_Naive LOneK1K
ENSG00000139343 SNRPF 558659 sc-eQTL 4.67e-01 -0.0537 0.0738 0.714 B_Naive LOneK1K
ENSG00000139350 NEDD1 -489636 sc-eQTL 5.81e-01 0.054 0.0977 0.714 B_Naive LOneK1K
ENSG00000059758 CDK17 17107 sc-eQTL 4.57e-06 -0.306 0.065 0.714 CD14_Mono LOneK1K
ENSG00000084110 HAL 421222 sc-eQTL 6.10e-01 -0.0423 0.0827 0.714 CD14_Mono LOneK1K
ENSG00000111142 METAP2 944067 sc-eQTL 5.45e-01 0.0472 0.0779 0.714 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 374067 sc-eQTL 8.10e-01 -0.0219 0.0909 0.714 CD14_Mono LOneK1K
ENSG00000111145 ELK3 223212 sc-eQTL 7.94e-01 0.0172 0.0656 0.714 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 558659 sc-eQTL 7.27e-01 -0.0221 0.0633 0.714 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -489636 sc-eQTL 5.72e-02 -0.188 0.0985 0.714 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 392264 sc-eQTL 8.80e-01 0.0139 0.092 0.714 CD14_Mono LOneK1K
ENSG00000059758 CDK17 17107 sc-eQTL 6.87e-01 0.0288 0.0712 0.718 CD16_Mono LOneK1K
ENSG00000084110 HAL 421222 sc-eQTL 4.60e-01 -0.0622 0.0841 0.718 CD16_Mono LOneK1K
ENSG00000111142 METAP2 944067 sc-eQTL 8.82e-01 -0.0141 0.0955 0.718 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 374067 sc-eQTL 2.50e-01 -0.107 0.0931 0.718 CD16_Mono LOneK1K
ENSG00000111145 ELK3 223212 sc-eQTL 7.14e-01 -0.0253 0.0691 0.718 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 558659 sc-eQTL 9.48e-01 -0.00463 0.0713 0.718 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -489636 sc-eQTL 1.29e-02 -0.226 0.09 0.718 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 392264 sc-eQTL 5.16e-01 -0.0628 0.0966 0.718 CD16_Mono LOneK1K
ENSG00000059758 CDK17 17107 sc-eQTL 4.09e-01 0.0402 0.0487 0.716 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 944067 sc-eQTL 5.75e-01 -0.0416 0.0741 0.716 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 374067 sc-eQTL 5.42e-01 -0.0517 0.0847 0.716 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 223212 sc-eQTL 6.62e-01 -0.034 0.0776 0.716 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 558659 sc-eQTL 8.57e-02 -0.114 0.0659 0.716 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -489636 sc-eQTL 6.78e-01 -0.0345 0.0827 0.716 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000059758 \N 17107 1.33e-05 1.58e-05 2.67e-06 9.4e-06 2.32e-06 6.19e-06 1.55e-05 2.41e-06 1.41e-05 6.62e-06 1.88e-05 7.07e-06 2.49e-05 5.81e-06 3.8e-06 8.56e-06 7.73e-06 1.18e-05 3.64e-06 3.24e-06 6.76e-06 1.26e-05 1.31e-05 3.69e-06 2.4e-05 4.96e-06 7.53e-06 5.42e-06 1.45e-05 1.27e-05 1.01e-05 9.7e-07 1.23e-06 3.93e-06 6.46e-06 2.85e-06 1.79e-06 2.09e-06 2.03e-06 1.19e-06 1.11e-06 1.97e-05 2.34e-06 1.35e-07 7.77e-07 2.15e-06 2.04e-06 6.58e-07 4.15e-07
ENSG00000111145 \N 223212 1.27e-06 9.34e-07 1.46e-07 6.42e-07 1.18e-07 3.3e-07 8.36e-07 3.2e-07 8.7e-07 2.72e-07 1.1e-06 5.77e-07 1.33e-06 2.68e-07 4.17e-07 5.02e-07 6.83e-07 5.31e-07 3.95e-07 3.93e-07 2.29e-07 6.27e-07 5.82e-07 3.29e-07 1.8e-06 2.48e-07 6.21e-07 4.94e-07 6.84e-07 8.38e-07 4.55e-07 4.21e-08 1.48e-07 3.03e-07 3.84e-07 2.99e-07 4.68e-07 1.21e-07 1.24e-07 1.8e-08 3.02e-07 1.22e-06 5.94e-08 5.7e-08 2e-07 6.01e-08 1.58e-07 8.81e-08 5.26e-08
ENSG00000188596 \N -71988 4.33e-06 4.86e-06 6.25e-07 3.02e-06 1e-06 1.27e-06 2.94e-06 9.77e-07 3.9e-06 1.97e-06 4.9e-06 3.37e-06 7.02e-06 2.33e-06 9.89e-07 2.49e-06 2e-06 2.7e-06 1.45e-06 9.91e-07 1.99e-06 4.05e-06 3.43e-06 1.8e-06 5.59e-06 1.3e-06 2.62e-06 1.44e-06 3.8e-06 3.62e-06 2.13e-06 3.42e-07 5.48e-07 1.73e-06 2.04e-06 8.52e-07 8.96e-07 4.68e-07 1.26e-06 3.65e-07 3.05e-07 5.69e-06 4.02e-07 1.68e-07 3.68e-07 3.22e-07 8.16e-07 2.22e-07 1.53e-07
ENSG00000257715 \N 392264 3.62e-07 2.5e-07 6.15e-08 2.61e-07 1.05e-07 1.03e-07 2.74e-07 6.57e-08 1.85e-07 1.03e-07 1.83e-07 1.59e-07 2.38e-07 8.42e-08 7.35e-08 1.06e-07 5.27e-08 2.15e-07 8e-08 7.05e-08 1.27e-07 1.81e-07 1.81e-07 4.37e-08 2.74e-07 1.65e-07 1.37e-07 1.47e-07 1.34e-07 1.1e-07 1.22e-07 4.85e-08 4.96e-08 1.02e-07 7.55e-08 3.57e-08 7.97e-08 7.25e-08 4.83e-08 6.67e-08 3.43e-08 1.68e-07 1.96e-08 1.54e-08 3.61e-08 9.86e-09 7.66e-08 2.85e-09 4.61e-08