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Genes within 1Mb (chr12:96415891:T:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 15411 sc-eQTL 1.09e-01 -0.0779 0.0484 0.692 B L1
ENSG00000111142 METAP2 942371 sc-eQTL 4.80e-01 0.0487 0.0688 0.692 B L1
ENSG00000111144 LTA4H 372371 sc-eQTL 8.32e-01 -0.0129 0.0605 0.692 B L1
ENSG00000111145 ELK3 221516 sc-eQTL 4.79e-01 -0.0456 0.0643 0.692 B L1
ENSG00000136014 USP44 864415 sc-eQTL 6.66e-02 -0.145 0.0787 0.692 B L1
ENSG00000139343 SNRPF 556963 sc-eQTL 1.13e-01 -0.0925 0.0581 0.692 B L1
ENSG00000139350 NEDD1 -491332 sc-eQTL 5.47e-01 0.0514 0.0853 0.692 B L1
ENSG00000059758 CDK17 15411 sc-eQTL 7.58e-01 -0.0123 0.0401 0.692 CD4T L1
ENSG00000111142 METAP2 942371 sc-eQTL 8.52e-01 0.0104 0.0559 0.692 CD4T L1
ENSG00000111144 LTA4H 372371 sc-eQTL 3.84e-01 -0.048 0.055 0.692 CD4T L1
ENSG00000111145 ELK3 221516 sc-eQTL 8.17e-01 0.0138 0.0596 0.692 CD4T L1
ENSG00000136014 USP44 864415 sc-eQTL 8.68e-01 0.0142 0.0851 0.692 CD4T L1
ENSG00000139343 SNRPF 556963 sc-eQTL 6.61e-01 -0.0229 0.0521 0.692 CD4T L1
ENSG00000139350 NEDD1 -491332 sc-eQTL 5.25e-01 0.0409 0.0642 0.692 CD4T L1
ENSG00000059758 CDK17 15411 sc-eQTL 2.50e-01 -0.0474 0.0411 0.692 CD8T L1
ENSG00000111142 METAP2 942371 sc-eQTL 4.27e-01 0.0529 0.0664 0.692 CD8T L1
ENSG00000111144 LTA4H 372371 sc-eQTL 3.87e-01 -0.0383 0.0442 0.692 CD8T L1
ENSG00000111145 ELK3 221516 sc-eQTL 1.06e-01 -0.107 0.0662 0.692 CD8T L1
ENSG00000136014 USP44 864415 sc-eQTL 8.73e-01 0.0121 0.0757 0.692 CD8T L1
ENSG00000139343 SNRPF 556963 sc-eQTL 3.73e-01 0.0487 0.0545 0.692 CD8T L1
ENSG00000139350 NEDD1 -491332 sc-eQTL 7.85e-01 -0.0198 0.0725 0.692 CD8T L1
ENSG00000059758 CDK17 15411 sc-eQTL 1.98e-01 -0.1 0.0775 0.691 DC L1
ENSG00000084110 HAL 419526 sc-eQTL 8.09e-01 -0.0214 0.0886 0.691 DC L1
ENSG00000111142 METAP2 942371 sc-eQTL 8.72e-01 0.0158 0.0977 0.691 DC L1
ENSG00000111144 LTA4H 372371 sc-eQTL 4.17e-01 -0.0589 0.0724 0.691 DC L1
ENSG00000111145 ELK3 221516 sc-eQTL 3.06e-01 0.0909 0.0885 0.691 DC L1
ENSG00000139343 SNRPF 556963 sc-eQTL 7.15e-01 0.027 0.0738 0.691 DC L1
ENSG00000139350 NEDD1 -491332 sc-eQTL 8.00e-01 0.0241 0.0948 0.691 DC L1
ENSG00000257715 AC007298.1 390568 sc-eQTL 9.01e-02 -0.145 0.0849 0.691 DC L1
ENSG00000059758 CDK17 15411 sc-eQTL 1.14e-02 -0.158 0.062 0.692 Mono L1
ENSG00000084110 HAL 419526 sc-eQTL 4.11e-01 -0.0653 0.0792 0.692 Mono L1
ENSG00000111142 METAP2 942371 sc-eQTL 7.21e-01 0.0245 0.0685 0.692 Mono L1
ENSG00000111144 LTA4H 372371 sc-eQTL 2.53e-01 -0.102 0.0893 0.692 Mono L1
ENSG00000111145 ELK3 221516 sc-eQTL 7.23e-01 0.0214 0.0601 0.692 Mono L1
ENSG00000139343 SNRPF 556963 sc-eQTL 6.11e-01 -0.0289 0.0567 0.692 Mono L1
ENSG00000139350 NEDD1 -491332 sc-eQTL 2.27e-02 -0.197 0.086 0.692 Mono L1
ENSG00000257715 AC007298.1 390568 sc-eQTL 6.97e-01 -0.0329 0.0844 0.692 Mono L1
ENSG00000059758 CDK17 15411 sc-eQTL 1.06e-01 0.0741 0.0456 0.695 NK L1
ENSG00000111142 METAP2 942371 sc-eQTL 7.35e-01 0.023 0.0679 0.695 NK L1
ENSG00000111144 LTA4H 372371 sc-eQTL 7.83e-01 -0.0214 0.0779 0.695 NK L1
ENSG00000111145 ELK3 221516 sc-eQTL 9.02e-01 -0.00908 0.0739 0.695 NK L1
ENSG00000139343 SNRPF 556963 sc-eQTL 2.57e-01 -0.0695 0.0611 0.695 NK L1
ENSG00000139350 NEDD1 -491332 sc-eQTL 2.71e-01 -0.0853 0.0773 0.695 NK L1
ENSG00000059758 CDK17 15411 sc-eQTL 9.63e-01 0.00181 0.0386 0.692 Other_T L1
ENSG00000074527 NTN4 624739 sc-eQTL 2.13e-01 -0.0888 0.0711 0.692 Other_T L1
ENSG00000111142 METAP2 942371 sc-eQTL 4.71e-01 0.0531 0.0735 0.692 Other_T L1
ENSG00000111144 LTA4H 372371 sc-eQTL 5.60e-01 -0.047 0.0806 0.692 Other_T L1
ENSG00000111145 ELK3 221516 sc-eQTL 9.42e-01 -0.0046 0.0629 0.692 Other_T L1
ENSG00000139343 SNRPF 556963 sc-eQTL 8.77e-01 -0.00906 0.0585 0.692 Other_T L1
ENSG00000139350 NEDD1 -491332 sc-eQTL 4.77e-01 -0.0634 0.0889 0.692 Other_T L1
ENSG00000188596 CFAP54 -73680 sc-eQTL 6.23e-01 0.0454 0.0922 0.692 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 15411 sc-eQTL 4.81e-01 0.0606 0.0858 0.696 B_Activated L2
ENSG00000111142 METAP2 942371 sc-eQTL 1.22e-02 0.269 0.106 0.696 B_Activated L2
ENSG00000111144 LTA4H 372371 sc-eQTL 9.89e-01 0.00133 0.0973 0.696 B_Activated L2
ENSG00000111145 ELK3 221516 sc-eQTL 3.52e-01 0.0959 0.103 0.696 B_Activated L2
ENSG00000136014 USP44 864415 sc-eQTL 1.47e-01 -0.114 0.0786 0.696 B_Activated L2
ENSG00000139343 SNRPF 556963 sc-eQTL 3.53e-01 0.0902 0.0969 0.696 B_Activated L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 8.31e-01 0.0217 0.102 0.696 B_Activated L2
ENSG00000059758 CDK17 15411 sc-eQTL 7.03e-01 -0.0288 0.0753 0.691 B_Intermediate L2
ENSG00000111142 METAP2 942371 sc-eQTL 6.82e-01 -0.0355 0.0864 0.691 B_Intermediate L2
ENSG00000111144 LTA4H 372371 sc-eQTL 8.74e-01 -0.0116 0.073 0.691 B_Intermediate L2
ENSG00000111145 ELK3 221516 sc-eQTL 2.28e-01 -0.0991 0.082 0.691 B_Intermediate L2
ENSG00000136014 USP44 864415 sc-eQTL 3.58e-01 -0.0892 0.0968 0.691 B_Intermediate L2
ENSG00000139343 SNRPF 556963 sc-eQTL 3.67e-01 -0.074 0.0818 0.691 B_Intermediate L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 4.47e-01 -0.073 0.0959 0.691 B_Intermediate L2
ENSG00000059758 CDK17 15411 sc-eQTL 8.46e-02 -0.126 0.0727 0.694 B_Memory L2
ENSG00000111142 METAP2 942371 sc-eQTL 7.48e-01 0.0307 0.0952 0.694 B_Memory L2
ENSG00000111144 LTA4H 372371 sc-eQTL 1.32e-01 -0.127 0.0841 0.694 B_Memory L2
ENSG00000111145 ELK3 221516 sc-eQTL 3.41e-01 -0.0792 0.0829 0.694 B_Memory L2
ENSG00000136014 USP44 864415 sc-eQTL 8.16e-01 -0.0213 0.0912 0.694 B_Memory L2
ENSG00000139343 SNRPF 556963 sc-eQTL 9.58e-01 -0.00469 0.088 0.694 B_Memory L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 6.19e-01 0.0485 0.0974 0.694 B_Memory L2
ENSG00000059758 CDK17 15411 sc-eQTL 4.86e-01 -0.0428 0.0613 0.692 B_Naive1 L2
ENSG00000111142 METAP2 942371 sc-eQTL 4.75e-01 0.0568 0.0793 0.692 B_Naive1 L2
ENSG00000111144 LTA4H 372371 sc-eQTL 2.80e-01 -0.0694 0.0641 0.692 B_Naive1 L2
ENSG00000111145 ELK3 221516 sc-eQTL 7.75e-01 -0.0217 0.076 0.692 B_Naive1 L2
ENSG00000136014 USP44 864415 sc-eQTL 3.89e-01 -0.0823 0.0954 0.692 B_Naive1 L2
ENSG00000139343 SNRPF 556963 sc-eQTL 6.55e-01 0.033 0.0739 0.692 B_Naive1 L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 1.78e-01 0.128 0.0944 0.692 B_Naive1 L2
ENSG00000059758 CDK17 15411 sc-eQTL 3.79e-01 -0.0673 0.0764 0.693 B_Naive2 L2
ENSG00000111142 METAP2 942371 sc-eQTL 3.79e-01 0.0813 0.0922 0.693 B_Naive2 L2
ENSG00000111144 LTA4H 372371 sc-eQTL 2.68e-01 -0.0803 0.0723 0.693 B_Naive2 L2
ENSG00000111145 ELK3 221516 sc-eQTL 6.48e-01 -0.039 0.0855 0.693 B_Naive2 L2
ENSG00000136014 USP44 864415 sc-eQTL 2.85e-01 -0.0987 0.0921 0.693 B_Naive2 L2
ENSG00000139343 SNRPF 556963 sc-eQTL 5.08e-01 -0.0563 0.0848 0.693 B_Naive2 L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 2.78e-01 -0.11 0.101 0.693 B_Naive2 L2
ENSG00000059758 CDK17 15411 sc-eQTL 1.11e-01 -0.113 0.0703 0.686 CD4_CTL L2
ENSG00000111142 METAP2 942371 sc-eQTL 6.04e-01 0.0527 0.101 0.686 CD4_CTL L2
ENSG00000111144 LTA4H 372371 sc-eQTL 1.69e-01 -0.137 0.0994 0.686 CD4_CTL L2
ENSG00000111145 ELK3 221516 sc-eQTL 8.29e-03 0.265 0.0993 0.686 CD4_CTL L2
ENSG00000136014 USP44 864415 sc-eQTL 5.85e-01 -0.0441 0.0806 0.686 CD4_CTL L2
ENSG00000139343 SNRPF 556963 sc-eQTL 6.57e-01 -0.0391 0.0878 0.686 CD4_CTL L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 2.43e-01 -0.118 0.101 0.686 CD4_CTL L2
ENSG00000059758 CDK17 15411 sc-eQTL 9.50e-01 0.00276 0.0441 0.692 CD4_Naive L2
ENSG00000111142 METAP2 942371 sc-eQTL 8.09e-01 0.0154 0.0636 0.692 CD4_Naive L2
ENSG00000111144 LTA4H 372371 sc-eQTL 1.70e-01 -0.0874 0.0635 0.692 CD4_Naive L2
ENSG00000111145 ELK3 221516 sc-eQTL 6.29e-01 0.0308 0.0638 0.692 CD4_Naive L2
ENSG00000136014 USP44 864415 sc-eQTL 6.99e-01 0.0347 0.0894 0.692 CD4_Naive L2
ENSG00000139343 SNRPF 556963 sc-eQTL 7.77e-01 -0.0161 0.0567 0.692 CD4_Naive L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 8.97e-01 0.00906 0.0698 0.692 CD4_Naive L2
ENSG00000059758 CDK17 15411 sc-eQTL 9.74e-01 0.0014 0.0429 0.692 CD4_TCM L2
ENSG00000111142 METAP2 942371 sc-eQTL 7.00e-01 -0.0281 0.073 0.692 CD4_TCM L2
ENSG00000111144 LTA4H 372371 sc-eQTL 6.75e-01 0.0305 0.0727 0.692 CD4_TCM L2
ENSG00000111145 ELK3 221516 sc-eQTL 2.68e-01 -0.0793 0.0714 0.692 CD4_TCM L2
ENSG00000136014 USP44 864415 sc-eQTL 4.93e-01 0.0678 0.0988 0.692 CD4_TCM L2
ENSG00000139343 SNRPF 556963 sc-eQTL 8.29e-01 -0.0127 0.0587 0.692 CD4_TCM L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 1.28e-01 0.122 0.0798 0.692 CD4_TCM L2
ENSG00000059758 CDK17 15411 sc-eQTL 7.80e-01 0.0147 0.0528 0.692 CD4_TEM L2
ENSG00000111142 METAP2 942371 sc-eQTL 2.36e-01 0.105 0.088 0.692 CD4_TEM L2
ENSG00000111144 LTA4H 372371 sc-eQTL 9.22e-01 0.00798 0.0816 0.692 CD4_TEM L2
ENSG00000111145 ELK3 221516 sc-eQTL 8.09e-01 -0.0184 0.0758 0.692 CD4_TEM L2
ENSG00000136014 USP44 864415 sc-eQTL 5.61e-01 0.0543 0.0932 0.692 CD4_TEM L2
ENSG00000139343 SNRPF 556963 sc-eQTL 6.29e-01 -0.0384 0.0793 0.692 CD4_TEM L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 7.88e-01 -0.0253 0.0941 0.692 CD4_TEM L2
ENSG00000059758 CDK17 15411 sc-eQTL 9.53e-01 -0.00305 0.0515 0.692 CD8_CTL L2
ENSG00000111142 METAP2 942371 sc-eQTL 3.87e-01 0.0771 0.0889 0.692 CD8_CTL L2
ENSG00000111144 LTA4H 372371 sc-eQTL 1.82e-01 -0.124 0.0926 0.692 CD8_CTL L2
ENSG00000111145 ELK3 221516 sc-eQTL 5.18e-01 0.0548 0.0846 0.692 CD8_CTL L2
ENSG00000136014 USP44 864415 sc-eQTL 6.61e-01 -0.0414 0.0944 0.692 CD8_CTL L2
ENSG00000139343 SNRPF 556963 sc-eQTL 6.66e-01 0.0336 0.0778 0.692 CD8_CTL L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 5.75e-01 -0.0489 0.0873 0.692 CD8_CTL L2
ENSG00000059758 CDK17 15411 sc-eQTL 2.70e-01 -0.0678 0.0613 0.692 CD8_Naive L2
ENSG00000111142 METAP2 942371 sc-eQTL 9.93e-01 -0.000694 0.0817 0.692 CD8_Naive L2
ENSG00000111144 LTA4H 372371 sc-eQTL 7.73e-01 0.0213 0.0737 0.692 CD8_Naive L2
ENSG00000111145 ELK3 221516 sc-eQTL 1.17e-01 -0.122 0.0775 0.692 CD8_Naive L2
ENSG00000136014 USP44 864415 sc-eQTL 9.78e-01 0.00231 0.0819 0.692 CD8_Naive L2
ENSG00000139343 SNRPF 556963 sc-eQTL 6.02e-01 0.0366 0.0701 0.692 CD8_Naive L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 8.54e-01 0.0154 0.0834 0.692 CD8_Naive L2
ENSG00000059758 CDK17 15411 sc-eQTL 6.25e-01 0.0325 0.0664 0.685 CD8_TCM L2
ENSG00000111142 METAP2 942371 sc-eQTL 4.06e-01 0.0824 0.0989 0.685 CD8_TCM L2
ENSG00000111144 LTA4H 372371 sc-eQTL 5.22e-01 0.0626 0.0975 0.685 CD8_TCM L2
ENSG00000111145 ELK3 221516 sc-eQTL 2.97e-01 -0.0862 0.0824 0.685 CD8_TCM L2
ENSG00000136014 USP44 864415 sc-eQTL 2.50e-01 0.103 0.0892 0.685 CD8_TCM L2
ENSG00000139343 SNRPF 556963 sc-eQTL 9.73e-01 0.00319 0.0952 0.685 CD8_TCM L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 2.72e-01 -0.102 0.0929 0.685 CD8_TCM L2
ENSG00000059758 CDK17 15411 sc-eQTL 7.78e-01 -0.0236 0.0837 0.696 CD8_TEM L2
ENSG00000111142 METAP2 942371 sc-eQTL 1.79e-01 0.132 0.0978 0.696 CD8_TEM L2
ENSG00000111144 LTA4H 372371 sc-eQTL 8.65e-01 0.0174 0.103 0.696 CD8_TEM L2
ENSG00000111145 ELK3 221516 sc-eQTL 9.07e-01 0.0117 0.101 0.696 CD8_TEM L2
ENSG00000136014 USP44 864415 sc-eQTL 1.17e-01 -0.134 0.0853 0.696 CD8_TEM L2
ENSG00000139343 SNRPF 556963 sc-eQTL 3.69e-01 0.0842 0.0935 0.696 CD8_TEM L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 1.89e-01 -0.134 0.101 0.696 CD8_TEM L2
ENSG00000059758 CDK17 15411 sc-eQTL 1.63e-01 -0.0768 0.0548 0.69 MAIT L2
ENSG00000074527 NTN4 624739 sc-eQTL 5.79e-01 -0.0412 0.0742 0.69 MAIT L2
ENSG00000111142 METAP2 942371 sc-eQTL 3.06e-01 0.0957 0.0932 0.69 MAIT L2
ENSG00000111144 LTA4H 372371 sc-eQTL 3.10e-01 0.0864 0.0849 0.69 MAIT L2
ENSG00000111145 ELK3 221516 sc-eQTL 5.34e-01 -0.0445 0.0713 0.69 MAIT L2
ENSG00000139343 SNRPF 556963 sc-eQTL 5.83e-01 -0.0455 0.0827 0.69 MAIT L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 6.60e-01 -0.0409 0.0929 0.69 MAIT L2
ENSG00000188596 CFAP54 -73680 sc-eQTL 8.94e-01 -0.0122 0.0921 0.69 MAIT L2
ENSG00000059758 CDK17 15411 sc-eQTL 3.80e-02 0.12 0.0576 0.696 NK_CD56bright L2
ENSG00000111142 METAP2 942371 sc-eQTL 4.71e-01 0.0708 0.0981 0.696 NK_CD56bright L2
ENSG00000111144 LTA4H 372371 sc-eQTL 4.06e-01 0.0716 0.0859 0.696 NK_CD56bright L2
ENSG00000111145 ELK3 221516 sc-eQTL 2.59e-01 0.103 0.0911 0.696 NK_CD56bright L2
ENSG00000139343 SNRPF 556963 sc-eQTL 8.86e-01 -0.0137 0.0955 0.696 NK_CD56bright L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 5.46e-01 -0.0583 0.0963 0.696 NK_CD56bright L2
ENSG00000059758 CDK17 15411 sc-eQTL 5.40e-02 0.0957 0.0494 0.696 NK_CD56dim L2
ENSG00000111142 METAP2 942371 sc-eQTL 4.79e-01 0.0618 0.0872 0.696 NK_CD56dim L2
ENSG00000111144 LTA4H 372371 sc-eQTL 8.49e-01 0.0171 0.09 0.696 NK_CD56dim L2
ENSG00000111145 ELK3 221516 sc-eQTL 6.00e-01 -0.0419 0.0796 0.696 NK_CD56dim L2
ENSG00000139343 SNRPF 556963 sc-eQTL 1.86e-01 -0.1 0.0755 0.696 NK_CD56dim L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 8.58e-01 -0.0157 0.0873 0.696 NK_CD56dim L2
ENSG00000059758 CDK17 15411 sc-eQTL 1.88e-01 -0.102 0.0776 0.696 NK_HLA L2
ENSG00000111142 METAP2 942371 sc-eQTL 6.88e-01 0.0395 0.0982 0.696 NK_HLA L2
ENSG00000111144 LTA4H 372371 sc-eQTL 1.40e-01 -0.15 0.102 0.696 NK_HLA L2
ENSG00000111145 ELK3 221516 sc-eQTL 8.47e-01 0.0184 0.0948 0.696 NK_HLA L2
ENSG00000139343 SNRPF 556963 sc-eQTL 4.25e-01 -0.0788 0.0987 0.696 NK_HLA L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 1.92e-01 -0.122 0.0931 0.696 NK_HLA L2
ENSG00000059758 CDK17 15411 sc-eQTL 3.39e-01 0.052 0.0542 0.696 NK_cytokine L2
ENSG00000111142 METAP2 942371 sc-eQTL 6.69e-01 0.0385 0.0901 0.696 NK_cytokine L2
ENSG00000111144 LTA4H 372371 sc-eQTL 3.23e-01 -0.0908 0.0916 0.696 NK_cytokine L2
ENSG00000111145 ELK3 221516 sc-eQTL 7.87e-01 -0.0237 0.0879 0.696 NK_cytokine L2
ENSG00000139343 SNRPF 556963 sc-eQTL 8.02e-01 -0.0187 0.0744 0.696 NK_cytokine L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 3.61e-01 -0.084 0.0918 0.696 NK_cytokine L2
ENSG00000059758 CDK17 15411 sc-eQTL 2.17e-01 -0.135 0.109 0.707 PB L2
ENSG00000111142 METAP2 942371 sc-eQTL 9.76e-02 0.211 0.126 0.707 PB L2
ENSG00000111144 LTA4H 372371 sc-eQTL 6.58e-01 -0.0428 0.0964 0.707 PB L2
ENSG00000111145 ELK3 221516 sc-eQTL 5.37e-01 0.0764 0.123 0.707 PB L2
ENSG00000136014 USP44 864415 sc-eQTL 4.30e-01 -0.0904 0.114 0.707 PB L2
ENSG00000139343 SNRPF 556963 sc-eQTL 3.87e-01 -0.104 0.12 0.707 PB L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 3.14e-01 0.144 0.143 0.707 PB L2
ENSG00000059758 CDK17 15411 sc-eQTL 7.57e-01 -0.0189 0.061 0.693 Pro_T L2
ENSG00000074527 NTN4 624739 sc-eQTL 9.24e-01 -0.00656 0.0685 0.693 Pro_T L2
ENSG00000111142 METAP2 942371 sc-eQTL 5.60e-01 0.0472 0.0808 0.693 Pro_T L2
ENSG00000111144 LTA4H 372371 sc-eQTL 2.04e-01 -0.102 0.0803 0.693 Pro_T L2
ENSG00000111145 ELK3 221516 sc-eQTL 1.58e-01 -0.137 0.097 0.693 Pro_T L2
ENSG00000139343 SNRPF 556963 sc-eQTL 7.69e-01 0.0181 0.0614 0.693 Pro_T L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 1.96e-01 -0.115 0.0889 0.693 Pro_T L2
ENSG00000188596 CFAP54 -73680 sc-eQTL 7.04e-01 -0.0275 0.0722 0.693 Pro_T L2
ENSG00000059758 CDK17 15411 sc-eQTL 4.68e-01 -0.0484 0.0665 0.692 Treg L2
ENSG00000111142 METAP2 942371 sc-eQTL 9.45e-01 0.00625 0.0906 0.692 Treg L2
ENSG00000111144 LTA4H 372371 sc-eQTL 3.45e-01 0.0797 0.0842 0.692 Treg L2
ENSG00000111145 ELK3 221516 sc-eQTL 3.43e-01 -0.0724 0.0763 0.692 Treg L2
ENSG00000136014 USP44 864415 sc-eQTL 1.41e-01 0.126 0.0854 0.692 Treg L2
ENSG00000139343 SNRPF 556963 sc-eQTL 7.05e-01 0.0335 0.0885 0.692 Treg L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 8.03e-01 -0.0247 0.0988 0.692 Treg L2
ENSG00000059758 CDK17 15411 sc-eQTL 8.07e-01 -0.0202 0.0825 0.685 cDC L2
ENSG00000084110 HAL 419526 sc-eQTL 5.21e-01 0.0551 0.0857 0.685 cDC L2
ENSG00000111142 METAP2 942371 sc-eQTL 1.75e-01 0.14 0.103 0.685 cDC L2
ENSG00000111144 LTA4H 372371 sc-eQTL 5.66e-01 -0.0423 0.0734 0.685 cDC L2
ENSG00000111145 ELK3 221516 sc-eQTL 1.73e-01 0.132 0.0965 0.685 cDC L2
ENSG00000139343 SNRPF 556963 sc-eQTL 1.41e-01 -0.119 0.0807 0.685 cDC L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 5.02e-01 0.0665 0.0988 0.685 cDC L2
ENSG00000257715 AC007298.1 390568 sc-eQTL 3.01e-01 -0.0862 0.0832 0.685 cDC L2
ENSG00000059758 CDK17 15411 sc-eQTL 1.78e-06 -0.336 0.0683 0.692 cMono_IL1B L2
ENSG00000084110 HAL 419526 sc-eQTL 4.07e-01 -0.0653 0.0786 0.692 cMono_IL1B L2
ENSG00000111142 METAP2 942371 sc-eQTL 3.28e-01 0.0798 0.0814 0.692 cMono_IL1B L2
ENSG00000111144 LTA4H 372371 sc-eQTL 2.93e-01 -0.0893 0.0848 0.692 cMono_IL1B L2
ENSG00000111145 ELK3 221516 sc-eQTL 9.11e-01 -0.00731 0.0655 0.692 cMono_IL1B L2
ENSG00000139343 SNRPF 556963 sc-eQTL 9.81e-01 -0.0016 0.0676 0.692 cMono_IL1B L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 6.00e-02 -0.174 0.0923 0.692 cMono_IL1B L2
ENSG00000257715 AC007298.1 390568 sc-eQTL 7.57e-01 0.0269 0.0868 0.692 cMono_IL1B L2
ENSG00000059758 CDK17 15411 sc-eQTL 6.97e-02 -0.148 0.0813 0.692 cMono_S100A L2
ENSG00000084110 HAL 419526 sc-eQTL 6.78e-01 0.0382 0.0919 0.692 cMono_S100A L2
ENSG00000111142 METAP2 942371 sc-eQTL 5.32e-01 0.0582 0.093 0.692 cMono_S100A L2
ENSG00000111144 LTA4H 372371 sc-eQTL 2.76e-01 -0.1 0.0916 0.692 cMono_S100A L2
ENSG00000111145 ELK3 221516 sc-eQTL 6.47e-01 0.0343 0.0748 0.692 cMono_S100A L2
ENSG00000139343 SNRPF 556963 sc-eQTL 2.70e-01 -0.0816 0.0737 0.692 cMono_S100A L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 1.58e-01 -0.141 0.0993 0.692 cMono_S100A L2
ENSG00000257715 AC007298.1 390568 sc-eQTL 4.55e-01 -0.0702 0.0938 0.692 cMono_S100A L2
ENSG00000059758 CDK17 15411 sc-eQTL 1.81e-01 0.103 0.0763 0.682 gdT L2
ENSG00000074527 NTN4 624739 sc-eQTL 7.41e-01 -0.0292 0.0881 0.682 gdT L2
ENSG00000111142 METAP2 942371 sc-eQTL 2.94e-01 0.116 0.11 0.682 gdT L2
ENSG00000111144 LTA4H 372371 sc-eQTL 2.57e-01 -0.13 0.114 0.682 gdT L2
ENSG00000111145 ELK3 221516 sc-eQTL 1.73e-01 0.145 0.106 0.682 gdT L2
ENSG00000139343 SNRPF 556963 sc-eQTL 7.16e-02 0.184 0.101 0.682 gdT L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 6.52e-01 0.0512 0.113 0.682 gdT L2
ENSG00000188596 CFAP54 -73680 sc-eQTL 3.09e-02 0.213 0.0976 0.682 gdT L2
ENSG00000059758 CDK17 15411 sc-eQTL 7.47e-01 0.0296 0.0915 0.691 intMono L2
ENSG00000084110 HAL 419526 sc-eQTL 9.62e-01 -0.00437 0.0926 0.691 intMono L2
ENSG00000111142 METAP2 942371 sc-eQTL 4.86e-01 -0.0731 0.105 0.691 intMono L2
ENSG00000111144 LTA4H 372371 sc-eQTL 1.08e-01 -0.153 0.0943 0.691 intMono L2
ENSG00000111145 ELK3 221516 sc-eQTL 7.91e-01 -0.0224 0.0845 0.691 intMono L2
ENSG00000139343 SNRPF 556963 sc-eQTL 1.58e-01 -0.128 0.0899 0.691 intMono L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 9.86e-01 -0.00169 0.0939 0.691 intMono L2
ENSG00000257715 AC007298.1 390568 sc-eQTL 7.76e-01 0.0269 0.0944 0.691 intMono L2
ENSG00000059758 CDK17 15411 sc-eQTL 7.19e-01 0.027 0.075 0.697 ncMono L2
ENSG00000084110 HAL 419526 sc-eQTL 2.17e-01 -0.103 0.0834 0.697 ncMono L2
ENSG00000111142 METAP2 942371 sc-eQTL 4.60e-01 0.0747 0.101 0.697 ncMono L2
ENSG00000111144 LTA4H 372371 sc-eQTL 2.47e-01 -0.108 0.093 0.697 ncMono L2
ENSG00000111145 ELK3 221516 sc-eQTL 9.51e-01 -0.00489 0.0801 0.697 ncMono L2
ENSG00000139343 SNRPF 556963 sc-eQTL 9.94e-01 0.000578 0.0818 0.697 ncMono L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 1.70e-02 -0.206 0.0857 0.697 ncMono L2
ENSG00000257715 AC007298.1 390568 sc-eQTL 5.16e-01 -0.0644 0.0991 0.697 ncMono L2
ENSG00000059758 CDK17 15411 sc-eQTL 3.08e-02 -0.208 0.0955 0.678 pDC L2
ENSG00000084110 HAL 419526 sc-eQTL 6.45e-01 -0.0378 0.0819 0.678 pDC L2
ENSG00000111142 METAP2 942371 sc-eQTL 1.25e-01 -0.169 0.11 0.678 pDC L2
ENSG00000111144 LTA4H 372371 sc-eQTL 7.17e-01 -0.0333 0.0916 0.678 pDC L2
ENSG00000111145 ELK3 221516 sc-eQTL 9.13e-01 0.0122 0.112 0.678 pDC L2
ENSG00000139343 SNRPF 556963 sc-eQTL 4.65e-01 0.0715 0.0977 0.678 pDC L2
ENSG00000139350 NEDD1 -491332 sc-eQTL 7.12e-01 0.0398 0.108 0.678 pDC L2
ENSG00000257715 AC007298.1 390568 sc-eQTL 8.87e-01 0.0132 0.0926 0.678 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 15411 sc-eQTL 1.91e-01 -0.0831 0.0632 0.692 B_Memory LOneK1K
ENSG00000111142 METAP2 942371 sc-eQTL 9.09e-01 -0.0101 0.0883 0.692 B_Memory LOneK1K
ENSG00000111144 LTA4H 372371 sc-eQTL 5.17e-01 -0.0427 0.0659 0.692 B_Memory LOneK1K
ENSG00000111145 ELK3 221516 sc-eQTL 2.30e-01 -0.0904 0.0751 0.692 B_Memory LOneK1K
ENSG00000136014 USP44 864415 sc-eQTL 2.68e-01 -0.104 0.0937 0.692 B_Memory LOneK1K
ENSG00000139343 SNRPF 556963 sc-eQTL 5.15e-01 -0.0476 0.073 0.692 B_Memory LOneK1K
ENSG00000139350 NEDD1 -491332 sc-eQTL 8.90e-01 0.0133 0.0958 0.692 B_Memory LOneK1K
ENSG00000059758 CDK17 15411 sc-eQTL 2.66e-01 -0.0611 0.0547 0.692 B_Naive LOneK1K
ENSG00000111142 METAP2 942371 sc-eQTL 2.32e-01 0.0887 0.074 0.692 B_Naive LOneK1K
ENSG00000111144 LTA4H 372371 sc-eQTL 4.24e-01 -0.0492 0.0615 0.692 B_Naive LOneK1K
ENSG00000111145 ELK3 221516 sc-eQTL 3.38e-01 -0.0672 0.07 0.692 B_Naive LOneK1K
ENSG00000136014 USP44 864415 sc-eQTL 3.10e-01 -0.087 0.0856 0.692 B_Naive LOneK1K
ENSG00000139343 SNRPF 556963 sc-eQTL 5.18e-01 -0.0457 0.0706 0.692 B_Naive LOneK1K
ENSG00000139350 NEDD1 -491332 sc-eQTL 4.73e-01 0.0671 0.0934 0.692 B_Naive LOneK1K
ENSG00000059758 CDK17 15411 sc-eQTL 1.23e-05 -0.28 0.0626 0.692 CD14_Mono LOneK1K
ENSG00000084110 HAL 419526 sc-eQTL 4.78e-01 -0.0563 0.0793 0.692 CD14_Mono LOneK1K
ENSG00000111142 METAP2 942371 sc-eQTL 6.56e-01 0.0334 0.0747 0.692 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 372371 sc-eQTL 3.75e-01 -0.0773 0.087 0.692 CD14_Mono LOneK1K
ENSG00000111145 ELK3 221516 sc-eQTL 6.32e-01 0.0301 0.0629 0.692 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 556963 sc-eQTL 5.92e-01 -0.0325 0.0607 0.692 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -491332 sc-eQTL 6.98e-02 -0.172 0.0945 0.692 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 390568 sc-eQTL 7.98e-01 -0.0226 0.0882 0.692 CD14_Mono LOneK1K
ENSG00000059758 CDK17 15411 sc-eQTL 7.32e-01 0.0234 0.0681 0.696 CD16_Mono LOneK1K
ENSG00000084110 HAL 419526 sc-eQTL 4.32e-01 -0.0634 0.0804 0.696 CD16_Mono LOneK1K
ENSG00000111142 METAP2 942371 sc-eQTL 6.82e-01 -0.0375 0.0914 0.696 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 372371 sc-eQTL 1.64e-01 -0.124 0.0889 0.696 CD16_Mono LOneK1K
ENSG00000111145 ELK3 221516 sc-eQTL 6.86e-01 -0.0268 0.0661 0.696 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 556963 sc-eQTL 6.98e-01 -0.0265 0.0681 0.696 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -491332 sc-eQTL 7.91e-02 -0.153 0.0868 0.696 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 390568 sc-eQTL 5.45e-01 -0.056 0.0924 0.696 CD16_Mono LOneK1K
ENSG00000059758 CDK17 15411 sc-eQTL 2.94e-01 0.0489 0.0465 0.696 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 942371 sc-eQTL 8.30e-01 0.0152 0.0709 0.696 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 372371 sc-eQTL 6.54e-01 -0.0364 0.081 0.696 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 221516 sc-eQTL 6.44e-01 -0.0343 0.0741 0.696 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 556963 sc-eQTL 1.22e-01 -0.098 0.0631 0.696 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -491332 sc-eQTL 4.05e-01 -0.066 0.079 0.696 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111145 ELK3 221516 eQTL 0.000788 -0.0594 0.0176 0.0 0.0 0.328
ENSG00000139344 AMDHD1 472560 eQTL 0.0441 -0.0687 0.0341 0.0 0.0 0.328
ENSG00000139350 NEDD1 -491332 eQTL 0.00874 -0.0645 0.0246 0.0 0.0 0.328
ENSG00000188596 CFAP54 -73684 eQTL 0.000869 -0.0683 0.0205 0.00122 0.0 0.328

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000059758 \N 15411 3.36e-05 2.74e-05 5.06e-06 1.33e-05 4.07e-06 1.29e-05 3.58e-05 3.71e-06 2.47e-05 1.22e-05 3.08e-05 1.21e-05 3.98e-05 1.05e-05 5.8e-06 1.4e-05 1.32e-05 2.14e-05 6.64e-06 5.3e-06 1.16e-05 2.66e-05 2.57e-05 7.51e-06 3.59e-05 6.35e-06 9.89e-06 9.46e-06 2.61e-05 2.13e-05 1.6e-05 1.62e-06 2.04e-06 5.81e-06 9.27e-06 4.48e-06 2.37e-06 2.82e-06 3.62e-06 2.77e-06 1.69e-06 3.22e-05 2.99e-06 2.8e-07 2.04e-06 2.75e-06 3.43e-06 1.43e-06 1.33e-06
ENSG00000111145 ELK3 221516 4.26e-06 4.09e-06 4.43e-07 1.93e-06 4.38e-07 7.79e-07 2.55e-06 6.48e-07 2.7e-06 1.29e-06 3.76e-06 1.79e-06 5.69e-06 1.4e-06 8.94e-07 1.98e-06 1.64e-06 2.11e-06 9.61e-07 1.29e-06 1.44e-06 3.58e-06 2.67e-06 1.08e-06 4.53e-06 1.26e-06 1.38e-06 1.84e-06 2.66e-06 2.5e-06 2.04e-06 3.28e-07 5.52e-07 1.23e-06 1.65e-06 8.31e-07 8.45e-07 4.03e-07 1.07e-06 3.32e-07 2.87e-07 4.9e-06 6.14e-07 1.99e-07 3.87e-07 3.09e-07 4.97e-07 2.42e-07 2.23e-07
ENSG00000188596 CFAP54 -73684 1.07e-05 1.23e-05 1.35e-06 5.52e-06 2.16e-06 4.26e-06 1.14e-05 1.91e-06 1e-05 5.11e-06 1.33e-05 5.47e-06 1.68e-05 3.78e-06 2.73e-06 6.47e-06 4.74e-06 7.72e-06 2.5e-06 2.76e-06 4.98e-06 1.03e-05 8e-06 3.3e-06 1.58e-05 3.68e-06 4.88e-06 3.77e-06 1.02e-05 8.46e-06 6.33e-06 9.58e-07 9.28e-07 2.79e-06 4.34e-06 2.1e-06 1.39e-06 1.35e-06 1.61e-06 1.04e-06 7.81e-07 1.51e-05 1.38e-06 1.33e-07 6.99e-07 1.29e-06 9.78e-07 6.33e-07 5.79e-07