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Genes within 1Mb (chr12:96414139:T:C):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 13659 sc-eQTL 5.82e-01 -0.0257 0.0466 0.654 B L1
ENSG00000111142 METAP2 940619 sc-eQTL 5.43e-01 0.0402 0.066 0.654 B L1
ENSG00000111144 LTA4H 370619 sc-eQTL 9.96e-01 0.000293 0.058 0.654 B L1
ENSG00000111145 ELK3 219764 sc-eQTL 6.11e-01 0.0315 0.0617 0.654 B L1
ENSG00000136014 USP44 862663 sc-eQTL 2.09e-02 -0.175 0.0751 0.654 B L1
ENSG00000139343 SNRPF 555211 sc-eQTL 4.31e-01 -0.0442 0.056 0.654 B L1
ENSG00000139350 NEDD1 -493084 sc-eQTL 6.68e-01 0.0351 0.0818 0.654 B L1
ENSG00000059758 CDK17 13659 sc-eQTL 5.96e-01 0.0204 0.0385 0.654 CD4T L1
ENSG00000111142 METAP2 940619 sc-eQTL 9.77e-01 0.00152 0.0537 0.654 CD4T L1
ENSG00000111144 LTA4H 370619 sc-eQTL 4.89e-01 -0.0366 0.0528 0.654 CD4T L1
ENSG00000111145 ELK3 219764 sc-eQTL 8.27e-01 0.0125 0.0573 0.654 CD4T L1
ENSG00000136014 USP44 862663 sc-eQTL 8.28e-01 0.0178 0.0817 0.654 CD4T L1
ENSG00000139343 SNRPF 555211 sc-eQTL 5.84e-01 -0.0274 0.05 0.654 CD4T L1
ENSG00000139350 NEDD1 -493084 sc-eQTL 1.51e-01 0.0884 0.0614 0.654 CD4T L1
ENSG00000059758 CDK17 13659 sc-eQTL 3.89e-01 -0.0342 0.0397 0.654 CD8T L1
ENSG00000111142 METAP2 940619 sc-eQTL 3.36e-01 0.0618 0.064 0.654 CD8T L1
ENSG00000111144 LTA4H 370619 sc-eQTL 2.54e-01 -0.0487 0.0425 0.654 CD8T L1
ENSG00000111145 ELK3 219764 sc-eQTL 2.30e-01 -0.077 0.064 0.654 CD8T L1
ENSG00000136014 USP44 862663 sc-eQTL 8.76e-01 0.0114 0.073 0.654 CD8T L1
ENSG00000139343 SNRPF 555211 sc-eQTL 3.11e-01 0.0533 0.0525 0.654 CD8T L1
ENSG00000139350 NEDD1 -493084 sc-eQTL 8.51e-01 0.0132 0.0699 0.654 CD8T L1
ENSG00000059758 CDK17 13659 sc-eQTL 3.39e-01 -0.0717 0.0748 0.655 DC L1
ENSG00000084110 HAL 417774 sc-eQTL 7.90e-01 0.0227 0.0853 0.655 DC L1
ENSG00000111142 METAP2 940619 sc-eQTL 4.14e-01 0.0768 0.0939 0.655 DC L1
ENSG00000111144 LTA4H 370619 sc-eQTL 5.04e-01 -0.0467 0.0697 0.655 DC L1
ENSG00000111145 ELK3 219764 sc-eQTL 6.09e-01 0.0437 0.0854 0.655 DC L1
ENSG00000139343 SNRPF 555211 sc-eQTL 5.67e-01 0.0408 0.071 0.655 DC L1
ENSG00000139350 NEDD1 -493084 sc-eQTL 8.72e-01 -0.0147 0.0912 0.655 DC L1
ENSG00000257715 AC007298.1 388816 sc-eQTL 1.49e-01 -0.119 0.0819 0.655 DC L1
ENSG00000059758 CDK17 13659 sc-eQTL 1.34e-02 -0.149 0.0598 0.654 Mono L1
ENSG00000084110 HAL 417774 sc-eQTL 4.82e-01 -0.0537 0.0764 0.654 Mono L1
ENSG00000111142 METAP2 940619 sc-eQTL 6.36e-01 0.0313 0.066 0.654 Mono L1
ENSG00000111144 LTA4H 370619 sc-eQTL 4.18e-01 -0.07 0.0862 0.654 Mono L1
ENSG00000111145 ELK3 219764 sc-eQTL 5.99e-01 0.0305 0.058 0.654 Mono L1
ENSG00000139343 SNRPF 555211 sc-eQTL 7.22e-01 -0.0195 0.0547 0.654 Mono L1
ENSG00000139350 NEDD1 -493084 sc-eQTL 5.09e-02 -0.163 0.0832 0.654 Mono L1
ENSG00000257715 AC007298.1 388816 sc-eQTL 8.77e-01 0.0126 0.0814 0.654 Mono L1
ENSG00000059758 CDK17 13659 sc-eQTL 2.92e-02 0.0958 0.0436 0.657 NK L1
ENSG00000111142 METAP2 940619 sc-eQTL 5.22e-01 0.0419 0.0652 0.657 NK L1
ENSG00000111144 LTA4H 370619 sc-eQTL 9.19e-01 0.00765 0.0749 0.657 NK L1
ENSG00000111145 ELK3 219764 sc-eQTL 9.91e-01 -0.000814 0.071 0.657 NK L1
ENSG00000139343 SNRPF 555211 sc-eQTL 2.51e-01 -0.0676 0.0587 0.657 NK L1
ENSG00000139350 NEDD1 -493084 sc-eQTL 2.72e-01 -0.0818 0.0744 0.657 NK L1
ENSG00000059758 CDK17 13659 sc-eQTL 5.90e-01 0.0201 0.0373 0.654 Other_T L1
ENSG00000074527 NTN4 622987 sc-eQTL 8.10e-02 -0.12 0.0685 0.654 Other_T L1
ENSG00000111142 METAP2 940619 sc-eQTL 2.17e-01 0.0879 0.0709 0.654 Other_T L1
ENSG00000111144 LTA4H 370619 sc-eQTL 4.80e-01 -0.0551 0.0778 0.654 Other_T L1
ENSG00000111145 ELK3 219764 sc-eQTL 6.98e-01 -0.0236 0.0608 0.654 Other_T L1
ENSG00000139343 SNRPF 555211 sc-eQTL 9.12e-01 -0.00623 0.0565 0.654 Other_T L1
ENSG00000139350 NEDD1 -493084 sc-eQTL 5.67e-01 -0.0493 0.086 0.654 Other_T L1
ENSG00000188596 CFAP54 -75432 sc-eQTL 6.92e-01 -0.0353 0.0891 0.654 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 13659 sc-eQTL 5.06e-01 0.0558 0.0838 0.656 B_Activated L2
ENSG00000111142 METAP2 940619 sc-eQTL 1.81e-02 0.248 0.104 0.656 B_Activated L2
ENSG00000111144 LTA4H 370619 sc-eQTL 8.08e-01 -0.0232 0.095 0.656 B_Activated L2
ENSG00000111145 ELK3 219764 sc-eQTL 3.09e-01 0.102 0.1 0.656 B_Activated L2
ENSG00000136014 USP44 862663 sc-eQTL 5.29e-01 -0.0486 0.0771 0.656 B_Activated L2
ENSG00000139343 SNRPF 555211 sc-eQTL 3.39e-01 0.0907 0.0946 0.656 B_Activated L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 9.11e-01 0.0111 0.0992 0.656 B_Activated L2
ENSG00000059758 CDK17 13659 sc-eQTL 8.24e-01 0.016 0.072 0.652 B_Intermediate L2
ENSG00000111142 METAP2 940619 sc-eQTL 5.67e-01 -0.0473 0.0825 0.652 B_Intermediate L2
ENSG00000111144 LTA4H 370619 sc-eQTL 7.70e-01 -0.0204 0.0697 0.652 B_Intermediate L2
ENSG00000111145 ELK3 219764 sc-eQTL 4.60e-01 -0.0581 0.0785 0.652 B_Intermediate L2
ENSG00000136014 USP44 862663 sc-eQTL 1.72e-01 -0.126 0.0923 0.652 B_Intermediate L2
ENSG00000139343 SNRPF 555211 sc-eQTL 2.92e-01 -0.0825 0.0781 0.652 B_Intermediate L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 3.80e-01 -0.0806 0.0916 0.652 B_Intermediate L2
ENSG00000059758 CDK17 13659 sc-eQTL 2.79e-01 -0.0757 0.0698 0.655 B_Memory L2
ENSG00000111142 METAP2 940619 sc-eQTL 7.99e-01 0.0232 0.0909 0.655 B_Memory L2
ENSG00000111144 LTA4H 370619 sc-eQTL 8.96e-02 -0.137 0.0802 0.655 B_Memory L2
ENSG00000111145 ELK3 219764 sc-eQTL 7.79e-01 -0.0224 0.0794 0.655 B_Memory L2
ENSG00000136014 USP44 862663 sc-eQTL 7.97e-01 0.0225 0.0871 0.655 B_Memory L2
ENSG00000139343 SNRPF 555211 sc-eQTL 4.04e-01 0.0703 0.084 0.655 B_Memory L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 6.82e-01 0.0381 0.0931 0.655 B_Memory L2
ENSG00000059758 CDK17 13659 sc-eQTL 9.40e-01 -0.00443 0.0585 0.654 B_Naive1 L2
ENSG00000111142 METAP2 940619 sc-eQTL 4.27e-01 0.0601 0.0755 0.654 B_Naive1 L2
ENSG00000111144 LTA4H 370619 sc-eQTL 2.87e-01 -0.0652 0.0611 0.654 B_Naive1 L2
ENSG00000111145 ELK3 219764 sc-eQTL 3.44e-01 0.0686 0.0722 0.654 B_Naive1 L2
ENSG00000136014 USP44 862663 sc-eQTL 8.72e-02 -0.155 0.0904 0.654 B_Naive1 L2
ENSG00000139343 SNRPF 555211 sc-eQTL 6.12e-01 0.0358 0.0704 0.654 B_Naive1 L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 2.86e-01 0.0964 0.0901 0.654 B_Naive1 L2
ENSG00000059758 CDK17 13659 sc-eQTL 6.77e-01 -0.0305 0.0731 0.655 B_Naive2 L2
ENSG00000111142 METAP2 940619 sc-eQTL 5.41e-01 0.0541 0.0882 0.655 B_Naive2 L2
ENSG00000111144 LTA4H 370619 sc-eQTL 4.12e-01 -0.0569 0.0692 0.655 B_Naive2 L2
ENSG00000111145 ELK3 219764 sc-eQTL 6.57e-01 -0.0363 0.0817 0.655 B_Naive2 L2
ENSG00000136014 USP44 862663 sc-eQTL 4.38e-01 -0.0686 0.0882 0.655 B_Naive2 L2
ENSG00000139343 SNRPF 555211 sc-eQTL 9.03e-01 -0.00993 0.0811 0.655 B_Naive2 L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 4.50e-01 -0.0729 0.0964 0.655 B_Naive2 L2
ENSG00000059758 CDK17 13659 sc-eQTL 1.61e-01 -0.0951 0.0676 0.645 CD4_CTL L2
ENSG00000111142 METAP2 940619 sc-eQTL 4.33e-01 0.0763 0.0971 0.645 CD4_CTL L2
ENSG00000111144 LTA4H 370619 sc-eQTL 1.55e-01 -0.136 0.0954 0.645 CD4_CTL L2
ENSG00000111145 ELK3 219764 sc-eQTL 1.61e-02 0.232 0.0956 0.645 CD4_CTL L2
ENSG00000136014 USP44 862663 sc-eQTL 6.64e-01 -0.0337 0.0774 0.645 CD4_CTL L2
ENSG00000139343 SNRPF 555211 sc-eQTL 6.37e-01 -0.0399 0.0843 0.645 CD4_CTL L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 1.96e-01 -0.126 0.0971 0.645 CD4_CTL L2
ENSG00000059758 CDK17 13659 sc-eQTL 4.03e-01 0.0355 0.0423 0.654 CD4_Naive L2
ENSG00000111142 METAP2 940619 sc-eQTL 8.46e-01 0.0119 0.0612 0.654 CD4_Naive L2
ENSG00000111144 LTA4H 370619 sc-eQTL 2.71e-01 -0.0675 0.0612 0.654 CD4_Naive L2
ENSG00000111145 ELK3 219764 sc-eQTL 5.28e-01 0.0388 0.0613 0.654 CD4_Naive L2
ENSG00000136014 USP44 862663 sc-eQTL 6.20e-01 0.0427 0.0859 0.654 CD4_Naive L2
ENSG00000139343 SNRPF 555211 sc-eQTL 8.17e-01 -0.0127 0.0545 0.654 CD4_Naive L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 6.07e-01 0.0346 0.0671 0.654 CD4_Naive L2
ENSG00000059758 CDK17 13659 sc-eQTL 5.81e-01 0.0227 0.0411 0.654 CD4_TCM L2
ENSG00000111142 METAP2 940619 sc-eQTL 6.98e-01 -0.0272 0.0701 0.654 CD4_TCM L2
ENSG00000111144 LTA4H 370619 sc-eQTL 4.07e-01 0.0579 0.0697 0.654 CD4_TCM L2
ENSG00000111145 ELK3 219764 sc-eQTL 3.40e-01 -0.0655 0.0685 0.654 CD4_TCM L2
ENSG00000136014 USP44 862663 sc-eQTL 4.97e-01 0.0645 0.0948 0.654 CD4_TCM L2
ENSG00000139343 SNRPF 555211 sc-eQTL 7.47e-01 -0.0182 0.0563 0.654 CD4_TCM L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 4.38e-02 0.155 0.0762 0.654 CD4_TCM L2
ENSG00000059758 CDK17 13659 sc-eQTL 1.93e-01 0.0659 0.0505 0.654 CD4_TEM L2
ENSG00000111142 METAP2 940619 sc-eQTL 2.61e-01 0.0954 0.0846 0.654 CD4_TEM L2
ENSG00000111144 LTA4H 370619 sc-eQTL 8.56e-01 0.0142 0.0784 0.654 CD4_TEM L2
ENSG00000111145 ELK3 219764 sc-eQTL 6.23e-01 -0.0358 0.0728 0.654 CD4_TEM L2
ENSG00000136014 USP44 862663 sc-eQTL 3.44e-01 0.0848 0.0894 0.654 CD4_TEM L2
ENSG00000139343 SNRPF 555211 sc-eQTL 2.09e-01 -0.0956 0.076 0.654 CD4_TEM L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 5.40e-01 0.0555 0.0903 0.654 CD4_TEM L2
ENSG00000059758 CDK17 13659 sc-eQTL 7.72e-01 0.0144 0.0496 0.654 CD8_CTL L2
ENSG00000111142 METAP2 940619 sc-eQTL 5.23e-01 0.0548 0.0857 0.654 CD8_CTL L2
ENSG00000111144 LTA4H 370619 sc-eQTL 4.54e-01 -0.0672 0.0895 0.654 CD8_CTL L2
ENSG00000111145 ELK3 219764 sc-eQTL 1.73e-01 0.111 0.0813 0.654 CD8_CTL L2
ENSG00000136014 USP44 862663 sc-eQTL 3.75e-01 -0.0808 0.0908 0.654 CD8_CTL L2
ENSG00000139343 SNRPF 555211 sc-eQTL 2.55e-01 0.0853 0.0748 0.654 CD8_CTL L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 7.22e-01 -0.0299 0.0841 0.654 CD8_CTL L2
ENSG00000059758 CDK17 13659 sc-eQTL 4.66e-01 -0.0432 0.0592 0.654 CD8_Naive L2
ENSG00000111142 METAP2 940619 sc-eQTL 4.97e-01 0.0536 0.0786 0.654 CD8_Naive L2
ENSG00000111144 LTA4H 370619 sc-eQTL 9.13e-01 -0.00777 0.071 0.654 CD8_Naive L2
ENSG00000111145 ELK3 219764 sc-eQTL 1.45e-01 -0.109 0.0747 0.654 CD8_Naive L2
ENSG00000136014 USP44 862663 sc-eQTL 8.92e-01 0.0107 0.0788 0.654 CD8_Naive L2
ENSG00000139343 SNRPF 555211 sc-eQTL 5.53e-01 0.04 0.0674 0.654 CD8_Naive L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 9.69e-01 0.00318 0.0804 0.654 CD8_Naive L2
ENSG00000059758 CDK17 13659 sc-eQTL 7.96e-01 -0.0165 0.0638 0.646 CD8_TCM L2
ENSG00000111142 METAP2 940619 sc-eQTL 5.80e-01 0.0527 0.0952 0.646 CD8_TCM L2
ENSG00000111144 LTA4H 370619 sc-eQTL 7.29e-01 0.0326 0.0938 0.646 CD8_TCM L2
ENSG00000111145 ELK3 219764 sc-eQTL 3.67e-01 -0.0717 0.0793 0.646 CD8_TCM L2
ENSG00000136014 USP44 862663 sc-eQTL 1.39e-01 0.127 0.0855 0.646 CD8_TCM L2
ENSG00000139343 SNRPF 555211 sc-eQTL 9.74e-01 -0.00304 0.0915 0.646 CD8_TCM L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 4.57e-01 -0.0667 0.0894 0.646 CD8_TCM L2
ENSG00000059758 CDK17 13659 sc-eQTL 9.72e-01 0.00279 0.0804 0.655 CD8_TEM L2
ENSG00000111142 METAP2 940619 sc-eQTL 4.65e-01 0.069 0.0943 0.655 CD8_TEM L2
ENSG00000111144 LTA4H 370619 sc-eQTL 8.76e-01 -0.0154 0.0985 0.655 CD8_TEM L2
ENSG00000111145 ELK3 219764 sc-eQTL 6.26e-01 0.0472 0.0968 0.655 CD8_TEM L2
ENSG00000136014 USP44 862663 sc-eQTL 2.99e-01 -0.0856 0.0822 0.655 CD8_TEM L2
ENSG00000139343 SNRPF 555211 sc-eQTL 9.63e-01 0.00417 0.09 0.655 CD8_TEM L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 4.48e-01 -0.0742 0.0976 0.655 CD8_TEM L2
ENSG00000059758 CDK17 13659 sc-eQTL 1.27e-01 -0.0812 0.0531 0.652 MAIT L2
ENSG00000074527 NTN4 622987 sc-eQTL 3.05e-01 -0.0738 0.0718 0.652 MAIT L2
ENSG00000111142 METAP2 940619 sc-eQTL 8.73e-02 0.155 0.0899 0.652 MAIT L2
ENSG00000111144 LTA4H 370619 sc-eQTL 2.82e-01 0.0886 0.0822 0.652 MAIT L2
ENSG00000111145 ELK3 219764 sc-eQTL 3.20e-01 -0.0688 0.069 0.652 MAIT L2
ENSG00000139343 SNRPF 555211 sc-eQTL 8.31e-01 -0.0172 0.0802 0.652 MAIT L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 8.60e-01 -0.0159 0.09 0.652 MAIT L2
ENSG00000188596 CFAP54 -75432 sc-eQTL 6.76e-01 -0.0373 0.0892 0.652 MAIT L2
ENSG00000059758 CDK17 13659 sc-eQTL 4.51e-02 0.112 0.0554 0.656 NK_CD56bright L2
ENSG00000111142 METAP2 940619 sc-eQTL 7.86e-01 0.0256 0.0944 0.656 NK_CD56bright L2
ENSG00000111144 LTA4H 370619 sc-eQTL 7.86e-01 0.0225 0.0827 0.656 NK_CD56bright L2
ENSG00000111145 ELK3 219764 sc-eQTL 4.90e-01 0.0606 0.0877 0.656 NK_CD56bright L2
ENSG00000139343 SNRPF 555211 sc-eQTL 8.82e-01 0.0137 0.0918 0.656 NK_CD56bright L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 8.75e-01 -0.0146 0.0927 0.656 NK_CD56bright L2
ENSG00000059758 CDK17 13659 sc-eQTL 7.68e-03 0.126 0.0469 0.657 NK_CD56dim L2
ENSG00000111142 METAP2 940619 sc-eQTL 2.02e-01 0.107 0.0832 0.657 NK_CD56dim L2
ENSG00000111144 LTA4H 370619 sc-eQTL 4.76e-01 0.0614 0.086 0.657 NK_CD56dim L2
ENSG00000111145 ELK3 219764 sc-eQTL 4.32e-01 -0.0599 0.0762 0.657 NK_CD56dim L2
ENSG00000139343 SNRPF 555211 sc-eQTL 2.16e-01 -0.0898 0.0723 0.657 NK_CD56dim L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 4.95e-01 -0.0571 0.0835 0.657 NK_CD56dim L2
ENSG00000059758 CDK17 13659 sc-eQTL 8.32e-01 -0.0159 0.0747 0.655 NK_HLA L2
ENSG00000111142 METAP2 940619 sc-eQTL 9.68e-01 0.00377 0.0942 0.655 NK_HLA L2
ENSG00000111144 LTA4H 370619 sc-eQTL 5.72e-01 -0.0554 0.0979 0.655 NK_HLA L2
ENSG00000111145 ELK3 219764 sc-eQTL 6.03e-01 0.0473 0.0909 0.655 NK_HLA L2
ENSG00000139343 SNRPF 555211 sc-eQTL 7.53e-01 -0.0298 0.0947 0.655 NK_HLA L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 1.44e-01 -0.131 0.0892 0.655 NK_HLA L2
ENSG00000059758 CDK17 13659 sc-eQTL 2.97e-01 0.0543 0.052 0.657 NK_cytokine L2
ENSG00000111142 METAP2 940619 sc-eQTL 6.51e-01 0.0392 0.0865 0.657 NK_cytokine L2
ENSG00000111144 LTA4H 370619 sc-eQTL 3.58e-01 -0.081 0.0879 0.657 NK_cytokine L2
ENSG00000111145 ELK3 219764 sc-eQTL 7.07e-01 0.0318 0.0843 0.657 NK_cytokine L2
ENSG00000139343 SNRPF 555211 sc-eQTL 5.27e-01 -0.0453 0.0714 0.657 NK_cytokine L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 6.27e-01 -0.0429 0.0883 0.657 NK_cytokine L2
ENSG00000059758 CDK17 13659 sc-eQTL 2.95e-01 -0.11 0.105 0.678 PB L2
ENSG00000111142 METAP2 940619 sc-eQTL 3.90e-02 0.253 0.121 0.678 PB L2
ENSG00000111144 LTA4H 370619 sc-eQTL 5.77e-01 -0.0519 0.0929 0.678 PB L2
ENSG00000111145 ELK3 219764 sc-eQTL 2.53e-01 0.136 0.119 0.678 PB L2
ENSG00000136014 USP44 862663 sc-eQTL 1.72e-01 -0.15 0.109 0.678 PB L2
ENSG00000139343 SNRPF 555211 sc-eQTL 4.55e-01 -0.087 0.116 0.678 PB L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 7.03e-01 0.0528 0.138 0.678 PB L2
ENSG00000059758 CDK17 13659 sc-eQTL 5.81e-01 0.0324 0.0587 0.654 Pro_T L2
ENSG00000074527 NTN4 622987 sc-eQTL 4.38e-01 -0.0512 0.0658 0.654 Pro_T L2
ENSG00000111142 METAP2 940619 sc-eQTL 7.42e-01 0.0257 0.0778 0.654 Pro_T L2
ENSG00000111144 LTA4H 370619 sc-eQTL 2.41e-01 -0.0908 0.0773 0.654 Pro_T L2
ENSG00000111145 ELK3 219764 sc-eQTL 6.30e-02 -0.174 0.093 0.654 Pro_T L2
ENSG00000139343 SNRPF 555211 sc-eQTL 6.47e-01 -0.0271 0.0591 0.654 Pro_T L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 4.90e-01 -0.0594 0.0858 0.654 Pro_T L2
ENSG00000188596 CFAP54 -75432 sc-eQTL 9.55e-02 -0.116 0.069 0.654 Pro_T L2
ENSG00000059758 CDK17 13659 sc-eQTL 6.65e-01 -0.0277 0.0639 0.654 Treg L2
ENSG00000111142 METAP2 940619 sc-eQTL 7.59e-01 -0.0267 0.087 0.654 Treg L2
ENSG00000111144 LTA4H 370619 sc-eQTL 4.51e-01 0.061 0.0809 0.654 Treg L2
ENSG00000111145 ELK3 219764 sc-eQTL 9.24e-01 -0.00697 0.0734 0.654 Treg L2
ENSG00000136014 USP44 862663 sc-eQTL 3.21e-02 0.176 0.0815 0.654 Treg L2
ENSG00000139343 SNRPF 555211 sc-eQTL 5.46e-01 0.0514 0.0849 0.654 Treg L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 8.56e-01 0.0172 0.0948 0.654 Treg L2
ENSG00000059758 CDK17 13659 sc-eQTL 8.27e-01 0.0175 0.0801 0.646 cDC L2
ENSG00000084110 HAL 417774 sc-eQTL 1.97e-01 0.107 0.0828 0.646 cDC L2
ENSG00000111142 METAP2 940619 sc-eQTL 9.95e-02 0.165 0.0997 0.646 cDC L2
ENSG00000111144 LTA4H 370619 sc-eQTL 9.69e-01 0.0028 0.0713 0.646 cDC L2
ENSG00000111145 ELK3 219764 sc-eQTL 3.47e-01 0.0885 0.0939 0.646 cDC L2
ENSG00000139343 SNRPF 555211 sc-eQTL 1.62e-01 -0.11 0.0784 0.646 cDC L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 5.09e-01 0.0634 0.0959 0.646 cDC L2
ENSG00000257715 AC007298.1 388816 sc-eQTL 4.73e-01 -0.0581 0.0809 0.646 cDC L2
ENSG00000059758 CDK17 13659 sc-eQTL 2.59e-05 -0.283 0.0657 0.654 cMono_IL1B L2
ENSG00000084110 HAL 417774 sc-eQTL 5.16e-01 -0.0486 0.0747 0.654 cMono_IL1B L2
ENSG00000111142 METAP2 940619 sc-eQTL 1.89e-01 0.102 0.0772 0.654 cMono_IL1B L2
ENSG00000111144 LTA4H 370619 sc-eQTL 3.16e-01 -0.081 0.0805 0.654 cMono_IL1B L2
ENSG00000111145 ELK3 219764 sc-eQTL 6.84e-01 -0.0253 0.0622 0.654 cMono_IL1B L2
ENSG00000139343 SNRPF 555211 sc-eQTL 9.73e-01 0.00216 0.0642 0.654 cMono_IL1B L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 1.11e-01 -0.14 0.0878 0.654 cMono_IL1B L2
ENSG00000257715 AC007298.1 388816 sc-eQTL 2.74e-01 0.0901 0.0822 0.654 cMono_IL1B L2
ENSG00000059758 CDK17 13659 sc-eQTL 8.85e-02 -0.134 0.0781 0.654 cMono_S100A L2
ENSG00000084110 HAL 417774 sc-eQTL 8.76e-01 0.0137 0.0882 0.654 cMono_S100A L2
ENSG00000111142 METAP2 940619 sc-eQTL 2.85e-01 0.0954 0.089 0.654 cMono_S100A L2
ENSG00000111144 LTA4H 370619 sc-eQTL 5.20e-01 -0.0568 0.0881 0.654 cMono_S100A L2
ENSG00000111145 ELK3 219764 sc-eQTL 1.12e-01 0.114 0.0714 0.654 cMono_S100A L2
ENSG00000139343 SNRPF 555211 sc-eQTL 3.04e-01 -0.0729 0.0708 0.654 cMono_S100A L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 2.78e-01 -0.104 0.0955 0.654 cMono_S100A L2
ENSG00000257715 AC007298.1 388816 sc-eQTL 4.22e-01 -0.0723 0.09 0.654 cMono_S100A L2
ENSG00000059758 CDK17 13659 sc-eQTL 1.88e-01 0.0957 0.0723 0.636 gdT L2
ENSG00000074527 NTN4 622987 sc-eQTL 3.54e-01 -0.0774 0.0833 0.636 gdT L2
ENSG00000111142 METAP2 940619 sc-eQTL 4.12e-01 0.0857 0.104 0.636 gdT L2
ENSG00000111144 LTA4H 370619 sc-eQTL 1.89e-01 -0.143 0.108 0.636 gdT L2
ENSG00000111145 ELK3 219764 sc-eQTL 1.87e-01 0.133 0.1 0.636 gdT L2
ENSG00000139343 SNRPF 555211 sc-eQTL 1.31e-01 0.146 0.0965 0.636 gdT L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 9.15e-01 -0.0115 0.107 0.636 gdT L2
ENSG00000188596 CFAP54 -75432 sc-eQTL 4.14e-01 0.0769 0.0939 0.636 gdT L2
ENSG00000059758 CDK17 13659 sc-eQTL 8.03e-01 0.022 0.0881 0.656 intMono L2
ENSG00000084110 HAL 417774 sc-eQTL 7.69e-01 0.0263 0.0891 0.656 intMono L2
ENSG00000111142 METAP2 940619 sc-eQTL 2.90e-01 -0.107 0.101 0.656 intMono L2
ENSG00000111144 LTA4H 370619 sc-eQTL 2.59e-01 -0.103 0.0911 0.656 intMono L2
ENSG00000111145 ELK3 219764 sc-eQTL 8.48e-01 0.0157 0.0814 0.656 intMono L2
ENSG00000139343 SNRPF 555211 sc-eQTL 8.40e-02 -0.15 0.0864 0.656 intMono L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 9.66e-01 -0.00389 0.0905 0.656 intMono L2
ENSG00000257715 AC007298.1 388816 sc-eQTL 8.82e-01 0.0136 0.091 0.656 intMono L2
ENSG00000059758 CDK17 13659 sc-eQTL 4.08e-01 0.0595 0.0718 0.656 ncMono L2
ENSG00000084110 HAL 417774 sc-eQTL 1.23e-01 -0.124 0.0798 0.656 ncMono L2
ENSG00000111142 METAP2 940619 sc-eQTL 8.46e-01 -0.0189 0.0971 0.656 ncMono L2
ENSG00000111144 LTA4H 370619 sc-eQTL 2.91e-01 -0.0945 0.0893 0.656 ncMono L2
ENSG00000111145 ELK3 219764 sc-eQTL 4.70e-01 0.0555 0.0767 0.656 ncMono L2
ENSG00000139343 SNRPF 555211 sc-eQTL 9.05e-01 -0.00942 0.0785 0.656 ncMono L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 1.18e-01 -0.13 0.0829 0.656 ncMono L2
ENSG00000257715 AC007298.1 388816 sc-eQTL 1.56e-01 -0.135 0.0947 0.656 ncMono L2
ENSG00000059758 CDK17 13659 sc-eQTL 5.87e-02 -0.172 0.0901 0.644 pDC L2
ENSG00000084110 HAL 417774 sc-eQTL 9.12e-01 -0.00851 0.077 0.644 pDC L2
ENSG00000111142 METAP2 940619 sc-eQTL 2.13e-01 -0.129 0.103 0.644 pDC L2
ENSG00000111144 LTA4H 370619 sc-eQTL 5.96e-01 -0.0457 0.0861 0.644 pDC L2
ENSG00000111145 ELK3 219764 sc-eQTL 8.72e-01 -0.0171 0.105 0.644 pDC L2
ENSG00000139343 SNRPF 555211 sc-eQTL 4.42e-01 0.0707 0.0918 0.644 pDC L2
ENSG00000139350 NEDD1 -493084 sc-eQTL 8.87e-01 -0.0144 0.101 0.644 pDC L2
ENSG00000257715 AC007298.1 388816 sc-eQTL 9.66e-01 -0.00372 0.087 0.644 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 13659 sc-eQTL 5.98e-01 -0.032 0.0607 0.654 B_Memory LOneK1K
ENSG00000111142 METAP2 940619 sc-eQTL 9.35e-01 -0.00685 0.0845 0.654 B_Memory LOneK1K
ENSG00000111144 LTA4H 370619 sc-eQTL 4.49e-01 -0.0478 0.063 0.654 B_Memory LOneK1K
ENSG00000111145 ELK3 219764 sc-eQTL 6.92e-01 -0.0286 0.0721 0.654 B_Memory LOneK1K
ENSG00000136014 USP44 862663 sc-eQTL 2.59e-01 -0.101 0.0896 0.654 B_Memory LOneK1K
ENSG00000139343 SNRPF 555211 sc-eQTL 9.43e-01 -0.00497 0.0699 0.654 B_Memory LOneK1K
ENSG00000139350 NEDD1 -493084 sc-eQTL 8.64e-01 -0.0157 0.0916 0.654 B_Memory LOneK1K
ENSG00000059758 CDK17 13659 sc-eQTL 7.99e-01 -0.0134 0.0525 0.654 B_Naive LOneK1K
ENSG00000111142 METAP2 940619 sc-eQTL 2.68e-01 0.0788 0.0709 0.654 B_Naive LOneK1K
ENSG00000111144 LTA4H 370619 sc-eQTL 5.49e-01 -0.0354 0.0589 0.654 B_Naive LOneK1K
ENSG00000111145 ELK3 219764 sc-eQTL 9.45e-01 -0.00461 0.0671 0.654 B_Naive LOneK1K
ENSG00000136014 USP44 862663 sc-eQTL 1.53e-01 -0.117 0.0817 0.654 B_Naive LOneK1K
ENSG00000139343 SNRPF 555211 sc-eQTL 8.36e-01 -0.014 0.0676 0.654 B_Naive LOneK1K
ENSG00000139350 NEDD1 -493084 sc-eQTL 4.79e-01 0.0634 0.0893 0.654 B_Naive LOneK1K
ENSG00000059758 CDK17 13659 sc-eQTL 1.55e-04 -0.234 0.0606 0.654 CD14_Mono LOneK1K
ENSG00000084110 HAL 417774 sc-eQTL 5.48e-01 -0.0457 0.0759 0.654 CD14_Mono LOneK1K
ENSG00000111142 METAP2 940619 sc-eQTL 4.26e-01 0.057 0.0715 0.654 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 370619 sc-eQTL 4.94e-01 -0.0572 0.0833 0.654 CD14_Mono LOneK1K
ENSG00000111145 ELK3 219764 sc-eQTL 4.49e-01 0.0456 0.0602 0.654 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 555211 sc-eQTL 6.70e-01 -0.0248 0.0581 0.654 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -493084 sc-eQTL 1.11e-01 -0.145 0.0907 0.654 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 388816 sc-eQTL 8.33e-01 0.0179 0.0845 0.654 CD14_Mono LOneK1K
ENSG00000059758 CDK17 13659 sc-eQTL 4.71e-01 0.0471 0.0653 0.657 CD16_Mono LOneK1K
ENSG00000084110 HAL 417774 sc-eQTL 4.08e-01 -0.064 0.0771 0.657 CD16_Mono LOneK1K
ENSG00000111142 METAP2 940619 sc-eQTL 3.91e-01 -0.0752 0.0875 0.657 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 370619 sc-eQTL 1.83e-01 -0.114 0.0853 0.657 CD16_Mono LOneK1K
ENSG00000111145 ELK3 219764 sc-eQTL 6.74e-01 0.0267 0.0634 0.657 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 555211 sc-eQTL 7.49e-01 -0.0209 0.0654 0.657 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -493084 sc-eQTL 2.58e-01 -0.0948 0.0836 0.657 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 388816 sc-eQTL 3.95e-01 -0.0754 0.0886 0.657 CD16_Mono LOneK1K
ENSG00000059758 CDK17 13659 sc-eQTL 7.63e-02 0.079 0.0443 0.657 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 940619 sc-eQTL 5.06e-01 0.0453 0.0679 0.657 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 370619 sc-eQTL 8.80e-01 0.0118 0.0777 0.657 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 219764 sc-eQTL 8.03e-01 -0.0178 0.0711 0.657 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 555211 sc-eQTL 8.66e-02 -0.104 0.0604 0.657 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -493084 sc-eQTL 3.23e-01 -0.075 0.0757 0.657 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111145 ELK3 219764 eQTL 0.00134 -0.0544 0.0169 0.0 0.0 0.371
ENSG00000188596 CFAP54 -75436 eQTL 0.0261 -0.0438 0.0197 0.0 0.0 0.371

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000059758 \N 13659 1.98e-05 2.3e-05 4.87e-06 1.29e-05 4.43e-06 1.09e-05 3.16e-05 3.74e-06 2.13e-05 1.13e-05 2.83e-05 1.07e-05 3.85e-05 9.56e-06 5.8e-06 1.29e-05 1.2e-05 1.92e-05 7.14e-06 5.95e-06 1.13e-05 2.36e-05 2.31e-05 8.47e-06 3.36e-05 6.35e-06 9.65e-06 9.35e-06 2.54e-05 2.53e-05 1.39e-05 1.58e-06 2.5e-06 7.02e-06 9.41e-06 5.45e-06 3.13e-06 3.13e-06 4.54e-06 3.36e-06 1.75e-06 2.73e-05 2.65e-06 4.29e-07 2.23e-06 3.27e-06 3.64e-06 1.55e-06 1.57e-06
ENSG00000084110 \N 417774 8.43e-07 4.93e-07 1.23e-07 3.58e-07 1.12e-07 2.08e-07 5.01e-07 1.55e-07 3.94e-07 2.43e-07 4.97e-07 3.91e-07 6.47e-07 1.23e-07 2.18e-07 2.23e-07 3.35e-07 3.82e-07 2.42e-07 1.67e-07 2.3e-07 3.71e-07 3.19e-07 1.73e-07 6.02e-07 2.4e-07 2.71e-07 2.68e-07 3.58e-07 5.82e-07 2.55e-07 3.99e-08 5.47e-08 1.49e-07 3.03e-07 1.66e-07 1.05e-07 1.06e-07 5.93e-08 2.53e-08 8.09e-08 3.85e-07 5.58e-08 2.06e-08 1.49e-07 1.46e-08 1.26e-07 3.17e-08 5.94e-08
ENSG00000111145 ELK3 219764 1.4e-06 1.33e-06 2.74e-07 1.27e-06 4.55e-07 6.28e-07 1.51e-06 3.75e-07 1.74e-06 7.36e-07 2.08e-06 1.18e-06 2.56e-06 3.36e-07 4.03e-07 9.95e-07 1.12e-06 1.09e-06 5.38e-07 5.67e-07 6.12e-07 1.96e-06 1.18e-06 6.51e-07 2.38e-06 7.94e-07 1.01e-06 8.57e-07 1.65e-06 1.3e-06 8.1e-07 2.86e-07 3.35e-07 5.53e-07 5.93e-07 6.16e-07 7.32e-07 3.45e-07 5.07e-07 2.31e-07 3.03e-07 1.7e-06 3.68e-07 7.3e-08 4.11e-07 3.24e-07 3.2e-07 2.53e-07 3.12e-07
ENSG00000139343 \N 555211 3.77e-07 1.78e-07 7.76e-08 2.27e-07 1.05e-07 1.13e-07 2.63e-07 7.52e-08 1.98e-07 1.28e-07 1.96e-07 1.86e-07 2.74e-07 8.66e-08 7.79e-08 1.1e-07 7.3e-08 2.43e-07 8.93e-08 8.31e-08 1.35e-07 2.06e-07 1.81e-07 4.34e-08 2.37e-07 1.76e-07 1.37e-07 1.44e-07 1.4e-07 1.89e-07 1.27e-07 8.25e-08 4.98e-08 9.9e-08 6.87e-08 5.23e-08 5.45e-08 6e-08 4.75e-08 7.78e-08 4.78e-08 1.55e-07 2.62e-08 1.1e-08 6.21e-08 8.59e-09 8.94e-08 2.94e-09 5.52e-08
ENSG00000188596 CFAP54 -75436 6.01e-06 7.72e-06 1.04e-06 3.69e-06 1.98e-06 2.14e-06 8.88e-06 1.49e-06 5.23e-06 4.06e-06 8.91e-06 3.66e-06 1.06e-05 2.85e-06 1.55e-06 4.76e-06 3.67e-06 3.78e-06 2.26e-06 2.51e-06 3.4e-06 7.51e-06 5.58e-06 2.6e-06 9.14e-06 2.66e-06 3.64e-06 2.35e-06 6.94e-06 7.69e-06 3.57e-06 5.57e-07 8.85e-07 2.79e-06 2.56e-06 2.09e-06 1.33e-06 1.19e-06 1.3e-06 8.62e-07 8.81e-07 8.09e-06 8.3e-07 1.59e-07 6.97e-07 1.01e-06 9.16e-07 7.23e-07 5.25e-07