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Genes within 1Mb (chr12:96411790:C:T):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 11310 sc-eQTL 5.87e-01 -0.0259 0.0476 0.669 B L1
ENSG00000111142 METAP2 938270 sc-eQTL 4.94e-01 0.0461 0.0673 0.669 B L1
ENSG00000111144 LTA4H 368270 sc-eQTL 7.88e-01 -0.0159 0.0591 0.669 B L1
ENSG00000111145 ELK3 217415 sc-eQTL 6.10e-01 0.0322 0.0629 0.669 B L1
ENSG00000136014 USP44 860314 sc-eQTL 1.21e-01 -0.12 0.0772 0.669 B L1
ENSG00000139343 SNRPF 552862 sc-eQTL 6.52e-01 -0.0259 0.0572 0.669 B L1
ENSG00000139350 NEDD1 -495433 sc-eQTL 5.77e-01 0.0466 0.0834 0.669 B L1
ENSG00000059758 CDK17 11310 sc-eQTL 9.84e-01 -0.000792 0.0388 0.669 CD4T L1
ENSG00000111142 METAP2 938270 sc-eQTL 9.95e-01 -0.000351 0.0542 0.669 CD4T L1
ENSG00000111144 LTA4H 368270 sc-eQTL 2.83e-01 -0.0573 0.0532 0.669 CD4T L1
ENSG00000111145 ELK3 217415 sc-eQTL 5.17e-01 -0.0374 0.0577 0.669 CD4T L1
ENSG00000136014 USP44 860314 sc-eQTL 6.14e-01 -0.0416 0.0824 0.669 CD4T L1
ENSG00000139343 SNRPF 552862 sc-eQTL 2.36e-01 -0.0598 0.0503 0.669 CD4T L1
ENSG00000139350 NEDD1 -495433 sc-eQTL 5.55e-01 0.0367 0.0621 0.669 CD4T L1
ENSG00000059758 CDK17 11310 sc-eQTL 3.96e-01 -0.0339 0.0398 0.669 CD8T L1
ENSG00000111142 METAP2 938270 sc-eQTL 2.35e-01 0.0765 0.0642 0.669 CD8T L1
ENSG00000111144 LTA4H 368270 sc-eQTL 6.56e-01 -0.0191 0.0428 0.669 CD8T L1
ENSG00000111145 ELK3 217415 sc-eQTL 1.34e-01 -0.0965 0.0641 0.669 CD8T L1
ENSG00000136014 USP44 860314 sc-eQTL 4.27e-01 -0.0583 0.0732 0.669 CD8T L1
ENSG00000139343 SNRPF 552862 sc-eQTL 9.10e-01 0.006 0.0528 0.669 CD8T L1
ENSG00000139350 NEDD1 -495433 sc-eQTL 7.29e-01 -0.0243 0.0702 0.669 CD8T L1
ENSG00000059758 CDK17 11310 sc-eQTL 5.51e-02 -0.144 0.0745 0.667 DC L1
ENSG00000084110 HAL 415425 sc-eQTL 7.11e-01 0.0318 0.0855 0.667 DC L1
ENSG00000111142 METAP2 938270 sc-eQTL 6.89e-01 0.0378 0.0943 0.667 DC L1
ENSG00000111144 LTA4H 368270 sc-eQTL 3.32e-01 -0.0679 0.0698 0.667 DC L1
ENSG00000111145 ELK3 217415 sc-eQTL 6.88e-01 0.0344 0.0857 0.667 DC L1
ENSG00000139343 SNRPF 552862 sc-eQTL 8.30e-01 -0.0153 0.0713 0.667 DC L1
ENSG00000139350 NEDD1 -495433 sc-eQTL 7.04e-01 0.0347 0.0915 0.667 DC L1
ENSG00000257715 AC007298.1 386467 sc-eQTL 4.37e-01 -0.0642 0.0825 0.667 DC L1
ENSG00000059758 CDK17 11310 sc-eQTL 9.85e-03 -0.155 0.0596 0.669 Mono L1
ENSG00000084110 HAL 415425 sc-eQTL 2.79e-01 -0.0825 0.076 0.669 Mono L1
ENSG00000111142 METAP2 938270 sc-eQTL 8.75e-01 0.0103 0.0659 0.669 Mono L1
ENSG00000111144 LTA4H 368270 sc-eQTL 2.23e-01 -0.105 0.0858 0.669 Mono L1
ENSG00000111145 ELK3 217415 sc-eQTL 5.72e-01 0.0327 0.0578 0.669 Mono L1
ENSG00000139343 SNRPF 552862 sc-eQTL 6.10e-01 -0.0278 0.0545 0.669 Mono L1
ENSG00000139350 NEDD1 -495433 sc-eQTL 2.95e-01 -0.0876 0.0835 0.669 Mono L1
ENSG00000257715 AC007298.1 386467 sc-eQTL 8.07e-01 0.0198 0.0811 0.669 Mono L1
ENSG00000059758 CDK17 11310 sc-eQTL 2.66e-02 0.0973 0.0436 0.667 NK L1
ENSG00000111142 METAP2 938270 sc-eQTL 7.81e-01 0.0181 0.0652 0.667 NK L1
ENSG00000111144 LTA4H 368270 sc-eQTL 9.29e-01 0.00665 0.0748 0.667 NK L1
ENSG00000111145 ELK3 217415 sc-eQTL 5.25e-01 -0.0452 0.0709 0.667 NK L1
ENSG00000139343 SNRPF 552862 sc-eQTL 1.33e-01 -0.0884 0.0585 0.667 NK L1
ENSG00000139350 NEDD1 -495433 sc-eQTL 1.08e-01 -0.12 0.074 0.667 NK L1
ENSG00000059758 CDK17 11310 sc-eQTL 6.00e-01 0.0198 0.0376 0.669 Other_T L1
ENSG00000074527 NTN4 620638 sc-eQTL 1.50e-01 -0.1 0.0693 0.669 Other_T L1
ENSG00000111142 METAP2 938270 sc-eQTL 9.73e-01 -0.00242 0.0719 0.669 Other_T L1
ENSG00000111144 LTA4H 368270 sc-eQTL 8.54e-01 -0.0145 0.0787 0.669 Other_T L1
ENSG00000111145 ELK3 217415 sc-eQTL 6.39e-01 -0.0289 0.0614 0.669 Other_T L1
ENSG00000139343 SNRPF 552862 sc-eQTL 6.58e-01 -0.0253 0.0571 0.669 Other_T L1
ENSG00000139350 NEDD1 -495433 sc-eQTL 5.93e-01 -0.0465 0.0869 0.669 Other_T L1
ENSG00000188596 CFAP54 -77781 sc-eQTL 6.10e-01 -0.046 0.09 0.669 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 11310 sc-eQTL 5.14e-01 0.0576 0.0881 0.671 B_Activated L2
ENSG00000111142 METAP2 938270 sc-eQTL 1.10e-01 0.177 0.11 0.671 B_Activated L2
ENSG00000111144 LTA4H 368270 sc-eQTL 4.78e-01 -0.0709 0.0997 0.671 B_Activated L2
ENSG00000111145 ELK3 217415 sc-eQTL 2.58e-01 0.12 0.105 0.671 B_Activated L2
ENSG00000136014 USP44 860314 sc-eQTL 3.78e-01 -0.0716 0.081 0.671 B_Activated L2
ENSG00000139343 SNRPF 552862 sc-eQTL 2.63e-01 0.112 0.0993 0.671 B_Activated L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 7.33e-01 -0.0356 0.104 0.671 B_Activated L2
ENSG00000059758 CDK17 11310 sc-eQTL 8.75e-01 0.0115 0.0728 0.667 B_Intermediate L2
ENSG00000111142 METAP2 938270 sc-eQTL 5.92e-01 -0.0447 0.0834 0.667 B_Intermediate L2
ENSG00000111144 LTA4H 368270 sc-eQTL 7.67e-01 -0.0209 0.0704 0.667 B_Intermediate L2
ENSG00000111145 ELK3 217415 sc-eQTL 2.30e-01 -0.0953 0.0792 0.667 B_Intermediate L2
ENSG00000136014 USP44 860314 sc-eQTL 3.05e-01 -0.0961 0.0934 0.667 B_Intermediate L2
ENSG00000139343 SNRPF 552862 sc-eQTL 1.14e-01 -0.125 0.0787 0.667 B_Intermediate L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 2.84e-01 -0.0994 0.0924 0.667 B_Intermediate L2
ENSG00000059758 CDK17 11310 sc-eQTL 1.86e-01 -0.0932 0.0702 0.67 B_Memory L2
ENSG00000111142 METAP2 938270 sc-eQTL 4.50e-01 0.0693 0.0915 0.67 B_Memory L2
ENSG00000111144 LTA4H 368270 sc-eQTL 3.72e-02 -0.169 0.0805 0.67 B_Memory L2
ENSG00000111145 ELK3 217415 sc-eQTL 6.08e-01 -0.0411 0.0799 0.67 B_Memory L2
ENSG00000136014 USP44 860314 sc-eQTL 3.91e-01 0.0753 0.0876 0.67 B_Memory L2
ENSG00000139343 SNRPF 552862 sc-eQTL 6.20e-01 0.042 0.0847 0.67 B_Memory L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 5.75e-01 0.0526 0.0937 0.67 B_Memory L2
ENSG00000059758 CDK17 11310 sc-eQTL 4.80e-01 -0.042 0.0593 0.669 B_Naive1 L2
ENSG00000111142 METAP2 938270 sc-eQTL 5.37e-01 0.0475 0.0768 0.669 B_Naive1 L2
ENSG00000111144 LTA4H 368270 sc-eQTL 3.75e-01 -0.0551 0.0621 0.669 B_Naive1 L2
ENSG00000111145 ELK3 217415 sc-eQTL 4.17e-01 0.0597 0.0734 0.669 B_Naive1 L2
ENSG00000136014 USP44 860314 sc-eQTL 4.08e-01 -0.0766 0.0923 0.669 B_Naive1 L2
ENSG00000139343 SNRPF 552862 sc-eQTL 4.76e-01 0.0509 0.0714 0.669 B_Naive1 L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 3.58e-01 0.0843 0.0915 0.669 B_Naive1 L2
ENSG00000059758 CDK17 11310 sc-eQTL 8.96e-01 -0.0097 0.0743 0.67 B_Naive2 L2
ENSG00000111142 METAP2 938270 sc-eQTL 5.38e-01 0.0553 0.0896 0.67 B_Naive2 L2
ENSG00000111144 LTA4H 368270 sc-eQTL 3.69e-01 -0.0633 0.0703 0.67 B_Naive2 L2
ENSG00000111145 ELK3 217415 sc-eQTL 7.91e-01 -0.0221 0.083 0.67 B_Naive2 L2
ENSG00000136014 USP44 860314 sc-eQTL 6.03e-01 -0.0467 0.0896 0.67 B_Naive2 L2
ENSG00000139343 SNRPF 552862 sc-eQTL 9.29e-01 0.00731 0.0824 0.67 B_Naive2 L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 7.48e-01 -0.0315 0.098 0.67 B_Naive2 L2
ENSG00000059758 CDK17 11310 sc-eQTL 4.66e-02 -0.137 0.0682 0.657 CD4_CTL L2
ENSG00000111142 METAP2 938270 sc-eQTL 2.51e-01 0.113 0.0983 0.657 CD4_CTL L2
ENSG00000111144 LTA4H 368270 sc-eQTL 5.68e-01 -0.0556 0.0971 0.657 CD4_CTL L2
ENSG00000111145 ELK3 217415 sc-eQTL 1.18e-01 0.153 0.0977 0.657 CD4_CTL L2
ENSG00000136014 USP44 860314 sc-eQTL 3.19e-01 -0.0782 0.0783 0.657 CD4_CTL L2
ENSG00000139343 SNRPF 552862 sc-eQTL 7.85e-01 -0.0233 0.0855 0.657 CD4_CTL L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 1.31e-01 -0.149 0.0983 0.657 CD4_CTL L2
ENSG00000059758 CDK17 11310 sc-eQTL 9.78e-01 0.00115 0.0426 0.669 CD4_Naive L2
ENSG00000111142 METAP2 938270 sc-eQTL 8.34e-01 0.0129 0.0614 0.669 CD4_Naive L2
ENSG00000111144 LTA4H 368270 sc-eQTL 1.67e-01 -0.0851 0.0613 0.669 CD4_Naive L2
ENSG00000111145 ELK3 217415 sc-eQTL 9.81e-01 0.00146 0.0616 0.669 CD4_Naive L2
ENSG00000136014 USP44 860314 sc-eQTL 8.79e-01 -0.0132 0.0863 0.669 CD4_Naive L2
ENSG00000139343 SNRPF 552862 sc-eQTL 2.72e-01 -0.0601 0.0546 0.669 CD4_Naive L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 9.10e-01 -0.00759 0.0674 0.669 CD4_Naive L2
ENSG00000059758 CDK17 11310 sc-eQTL 9.79e-01 -0.00109 0.0415 0.669 CD4_TCM L2
ENSG00000111142 METAP2 938270 sc-eQTL 4.78e-01 -0.0503 0.0706 0.669 CD4_TCM L2
ENSG00000111144 LTA4H 368270 sc-eQTL 5.12e-01 0.0462 0.0704 0.669 CD4_TCM L2
ENSG00000111145 ELK3 217415 sc-eQTL 2.32e-01 -0.0828 0.0691 0.669 CD4_TCM L2
ENSG00000136014 USP44 860314 sc-eQTL 8.55e-01 0.0175 0.0958 0.669 CD4_TCM L2
ENSG00000139343 SNRPF 552862 sc-eQTL 6.38e-01 -0.0268 0.0568 0.669 CD4_TCM L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 2.13e-01 0.0966 0.0774 0.669 CD4_TCM L2
ENSG00000059758 CDK17 11310 sc-eQTL 1.24e-01 0.0786 0.0509 0.669 CD4_TEM L2
ENSG00000111142 METAP2 938270 sc-eQTL 2.40e-01 0.101 0.0853 0.669 CD4_TEM L2
ENSG00000111144 LTA4H 368270 sc-eQTL 9.21e-01 -0.00782 0.0791 0.669 CD4_TEM L2
ENSG00000111145 ELK3 217415 sc-eQTL 3.27e-01 -0.0721 0.0733 0.669 CD4_TEM L2
ENSG00000136014 USP44 860314 sc-eQTL 7.59e-01 0.0277 0.0904 0.669 CD4_TEM L2
ENSG00000139343 SNRPF 552862 sc-eQTL 3.40e-01 -0.0735 0.0768 0.669 CD4_TEM L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 8.13e-01 0.0216 0.0912 0.669 CD4_TEM L2
ENSG00000059758 CDK17 11310 sc-eQTL 8.38e-01 0.0102 0.0499 0.669 CD8_CTL L2
ENSG00000111142 METAP2 938270 sc-eQTL 5.62e-01 0.0501 0.0862 0.669 CD8_CTL L2
ENSG00000111144 LTA4H 368270 sc-eQTL 9.31e-01 0.00778 0.0902 0.669 CD8_CTL L2
ENSG00000111145 ELK3 217415 sc-eQTL 8.97e-02 0.139 0.0815 0.669 CD8_CTL L2
ENSG00000136014 USP44 860314 sc-eQTL 2.48e-01 -0.106 0.0912 0.669 CD8_CTL L2
ENSG00000139343 SNRPF 552862 sc-eQTL 6.33e-01 0.0361 0.0754 0.669 CD8_CTL L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 5.22e-01 -0.0543 0.0846 0.669 CD8_CTL L2
ENSG00000059758 CDK17 11310 sc-eQTL 4.87e-01 -0.0415 0.0596 0.669 CD8_Naive L2
ENSG00000111142 METAP2 938270 sc-eQTL 5.07e-01 0.0526 0.0792 0.669 CD8_Naive L2
ENSG00000111144 LTA4H 368270 sc-eQTL 4.40e-01 0.0552 0.0713 0.669 CD8_Naive L2
ENSG00000111145 ELK3 217415 sc-eQTL 7.89e-02 -0.132 0.075 0.669 CD8_Naive L2
ENSG00000136014 USP44 860314 sc-eQTL 3.65e-01 -0.0719 0.0792 0.669 CD8_Naive L2
ENSG00000139343 SNRPF 552862 sc-eQTL 8.97e-01 -0.00882 0.0679 0.669 CD8_Naive L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 9.33e-01 -0.00677 0.0809 0.669 CD8_Naive L2
ENSG00000059758 CDK17 11310 sc-eQTL 7.50e-01 -0.0205 0.0642 0.662 CD8_TCM L2
ENSG00000111142 METAP2 938270 sc-eQTL 1.81e-01 0.128 0.0954 0.662 CD8_TCM L2
ENSG00000111144 LTA4H 368270 sc-eQTL 5.07e-01 0.0627 0.0943 0.662 CD8_TCM L2
ENSG00000111145 ELK3 217415 sc-eQTL 1.82e-01 -0.107 0.0796 0.662 CD8_TCM L2
ENSG00000136014 USP44 860314 sc-eQTL 9.37e-02 0.145 0.0859 0.662 CD8_TCM L2
ENSG00000139343 SNRPF 552862 sc-eQTL 6.96e-01 -0.036 0.092 0.662 CD8_TCM L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 7.20e-01 -0.0324 0.0901 0.662 CD8_TCM L2
ENSG00000059758 CDK17 11310 sc-eQTL 9.11e-01 0.00908 0.0809 0.671 CD8_TEM L2
ENSG00000111142 METAP2 938270 sc-eQTL 5.41e-01 0.0582 0.0949 0.671 CD8_TEM L2
ENSG00000111144 LTA4H 368270 sc-eQTL 3.62e-01 -0.0903 0.0989 0.671 CD8_TEM L2
ENSG00000111145 ELK3 217415 sc-eQTL 7.59e-01 0.0299 0.0974 0.671 CD8_TEM L2
ENSG00000136014 USP44 860314 sc-eQTL 2.21e-01 -0.102 0.0826 0.671 CD8_TEM L2
ENSG00000139343 SNRPF 552862 sc-eQTL 7.68e-01 -0.0267 0.0905 0.671 CD8_TEM L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 3.82e-01 -0.0859 0.0981 0.671 CD8_TEM L2
ENSG00000059758 CDK17 11310 sc-eQTL 2.08e-01 -0.0672 0.0533 0.667 MAIT L2
ENSG00000074527 NTN4 620638 sc-eQTL 3.42e-01 -0.0684 0.0719 0.667 MAIT L2
ENSG00000111142 METAP2 938270 sc-eQTL 4.19e-01 0.0734 0.0906 0.667 MAIT L2
ENSG00000111144 LTA4H 368270 sc-eQTL 1.38e-01 0.122 0.0822 0.667 MAIT L2
ENSG00000111145 ELK3 217415 sc-eQTL 2.82e-01 -0.0746 0.0691 0.667 MAIT L2
ENSG00000139343 SNRPF 552862 sc-eQTL 7.79e-01 -0.0226 0.0803 0.667 MAIT L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 8.81e-01 0.0135 0.0902 0.667 MAIT L2
ENSG00000188596 CFAP54 -77781 sc-eQTL 6.91e-01 -0.0355 0.0894 0.667 MAIT L2
ENSG00000059758 CDK17 11310 sc-eQTL 1.63e-02 0.134 0.0552 0.664 NK_CD56bright L2
ENSG00000111142 METAP2 938270 sc-eQTL 9.24e-01 0.00898 0.0946 0.664 NK_CD56bright L2
ENSG00000111144 LTA4H 368270 sc-eQTL 8.45e-01 -0.0162 0.0829 0.664 NK_CD56bright L2
ENSG00000111145 ELK3 217415 sc-eQTL 7.51e-01 0.0279 0.0879 0.664 NK_CD56bright L2
ENSG00000139343 SNRPF 552862 sc-eQTL 3.22e-01 -0.0912 0.0918 0.664 NK_CD56bright L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 2.13e-01 -0.116 0.0925 0.664 NK_CD56bright L2
ENSG00000059758 CDK17 11310 sc-eQTL 4.30e-03 0.135 0.0469 0.666 NK_CD56dim L2
ENSG00000111142 METAP2 938270 sc-eQTL 2.79e-01 0.0906 0.0835 0.666 NK_CD56dim L2
ENSG00000111144 LTA4H 368270 sc-eQTL 6.86e-01 0.035 0.0863 0.666 NK_CD56dim L2
ENSG00000111145 ELK3 217415 sc-eQTL 1.78e-01 -0.103 0.0761 0.666 NK_CD56dim L2
ENSG00000139343 SNRPF 552862 sc-eQTL 2.11e-01 -0.0909 0.0725 0.666 NK_CD56dim L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 5.82e-01 -0.0462 0.0838 0.666 NK_CD56dim L2
ENSG00000059758 CDK17 11310 sc-eQTL 9.76e-01 -0.0023 0.0749 0.664 NK_HLA L2
ENSG00000111142 METAP2 938270 sc-eQTL 9.89e-01 0.0013 0.0944 0.664 NK_HLA L2
ENSG00000111144 LTA4H 368270 sc-eQTL 7.21e-01 -0.0351 0.0982 0.664 NK_HLA L2
ENSG00000111145 ELK3 217415 sc-eQTL 9.41e-01 0.0067 0.0911 0.664 NK_HLA L2
ENSG00000139343 SNRPF 552862 sc-eQTL 3.68e-01 -0.0855 0.0948 0.664 NK_HLA L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 1.43e-01 -0.132 0.0894 0.664 NK_HLA L2
ENSG00000059758 CDK17 11310 sc-eQTL 4.21e-01 0.042 0.0521 0.666 NK_cytokine L2
ENSG00000111142 METAP2 938270 sc-eQTL 7.86e-01 -0.0236 0.0867 0.666 NK_cytokine L2
ENSG00000111144 LTA4H 368270 sc-eQTL 6.63e-01 -0.0385 0.0882 0.666 NK_cytokine L2
ENSG00000111145 ELK3 217415 sc-eQTL 5.61e-01 0.0491 0.0844 0.666 NK_cytokine L2
ENSG00000139343 SNRPF 552862 sc-eQTL 4.14e-01 -0.0585 0.0715 0.666 NK_cytokine L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 2.79e-01 -0.0957 0.0882 0.666 NK_cytokine L2
ENSG00000059758 CDK17 11310 sc-eQTL 6.78e-01 -0.0438 0.105 0.689 PB L2
ENSG00000111142 METAP2 938270 sc-eQTL 7.66e-02 0.217 0.121 0.689 PB L2
ENSG00000111144 LTA4H 368270 sc-eQTL 4.95e-01 -0.0635 0.0928 0.689 PB L2
ENSG00000111145 ELK3 217415 sc-eQTL 2.97e-01 0.124 0.119 0.689 PB L2
ENSG00000136014 USP44 860314 sc-eQTL 2.52e-01 -0.126 0.11 0.689 PB L2
ENSG00000139343 SNRPF 552862 sc-eQTL 6.74e-01 -0.049 0.116 0.689 PB L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 3.06e-01 0.141 0.137 0.689 PB L2
ENSG00000059758 CDK17 11310 sc-eQTL 5.55e-01 0.0352 0.0595 0.67 Pro_T L2
ENSG00000074527 NTN4 620638 sc-eQTL 5.88e-01 -0.0362 0.0668 0.67 Pro_T L2
ENSG00000111142 METAP2 938270 sc-eQTL 9.36e-01 0.00632 0.079 0.67 Pro_T L2
ENSG00000111144 LTA4H 368270 sc-eQTL 3.53e-01 -0.073 0.0785 0.67 Pro_T L2
ENSG00000111145 ELK3 217415 sc-eQTL 8.97e-02 -0.161 0.0944 0.67 Pro_T L2
ENSG00000139343 SNRPF 552862 sc-eQTL 9.74e-01 -0.00193 0.06 0.67 Pro_T L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 6.98e-01 0.0338 0.0871 0.67 Pro_T L2
ENSG00000188596 CFAP54 -77781 sc-eQTL 1.93e-01 -0.0917 0.0702 0.67 Pro_T L2
ENSG00000059758 CDK17 11310 sc-eQTL 3.70e-01 -0.058 0.0645 0.669 Treg L2
ENSG00000111142 METAP2 938270 sc-eQTL 6.37e-01 -0.0415 0.0879 0.669 Treg L2
ENSG00000111144 LTA4H 368270 sc-eQTL 2.48e-01 0.0945 0.0816 0.669 Treg L2
ENSG00000111145 ELK3 217415 sc-eQTL 4.00e-01 -0.0625 0.0741 0.669 Treg L2
ENSG00000136014 USP44 860314 sc-eQTL 1.68e-01 0.115 0.0829 0.669 Treg L2
ENSG00000139343 SNRPF 552862 sc-eQTL 7.37e-01 0.0289 0.0859 0.669 Treg L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 8.98e-01 0.0123 0.0959 0.669 Treg L2
ENSG00000059758 CDK17 11310 sc-eQTL 3.84e-01 -0.0687 0.0786 0.656 cDC L2
ENSG00000084110 HAL 415425 sc-eQTL 2.18e-01 0.101 0.0815 0.656 cDC L2
ENSG00000111142 METAP2 938270 sc-eQTL 1.81e-01 0.132 0.0984 0.656 cDC L2
ENSG00000111144 LTA4H 368270 sc-eQTL 7.98e-01 -0.0179 0.0702 0.656 cDC L2
ENSG00000111145 ELK3 217415 sc-eQTL 3.01e-01 0.0959 0.0924 0.656 cDC L2
ENSG00000139343 SNRPF 552862 sc-eQTL 7.28e-02 -0.139 0.0769 0.656 cDC L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 5.20e-01 0.0608 0.0944 0.656 cDC L2
ENSG00000257715 AC007298.1 386467 sc-eQTL 8.55e-01 -0.0146 0.0797 0.656 cDC L2
ENSG00000059758 CDK17 11310 sc-eQTL 2.30e-05 -0.285 0.0657 0.669 cMono_IL1B L2
ENSG00000084110 HAL 415425 sc-eQTL 5.62e-01 -0.0434 0.0748 0.669 cMono_IL1B L2
ENSG00000111142 METAP2 938270 sc-eQTL 3.40e-01 0.0741 0.0774 0.669 cMono_IL1B L2
ENSG00000111144 LTA4H 368270 sc-eQTL 1.56e-01 -0.115 0.0804 0.669 cMono_IL1B L2
ENSG00000111145 ELK3 217415 sc-eQTL 8.29e-01 -0.0134 0.0623 0.669 cMono_IL1B L2
ENSG00000139343 SNRPF 552862 sc-eQTL 7.03e-01 -0.0245 0.0642 0.669 cMono_IL1B L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 7.07e-01 -0.0333 0.0884 0.669 cMono_IL1B L2
ENSG00000257715 AC007298.1 386467 sc-eQTL 2.55e-01 0.094 0.0823 0.669 cMono_IL1B L2
ENSG00000059758 CDK17 11310 sc-eQTL 1.46e-01 -0.115 0.0785 0.669 cMono_S100A L2
ENSG00000084110 HAL 415425 sc-eQTL 6.91e-01 -0.0352 0.0885 0.669 cMono_S100A L2
ENSG00000111142 METAP2 938270 sc-eQTL 1.42e-01 0.131 0.0891 0.669 cMono_S100A L2
ENSG00000111144 LTA4H 368270 sc-eQTL 3.08e-01 -0.0901 0.0882 0.669 cMono_S100A L2
ENSG00000111145 ELK3 217415 sc-eQTL 8.73e-02 0.123 0.0715 0.669 cMono_S100A L2
ENSG00000139343 SNRPF 552862 sc-eQTL 5.42e-01 -0.0434 0.0711 0.669 cMono_S100A L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 6.09e-01 -0.0492 0.0961 0.669 cMono_S100A L2
ENSG00000257715 AC007298.1 386467 sc-eQTL 5.81e-01 -0.05 0.0904 0.669 cMono_S100A L2
ENSG00000059758 CDK17 11310 sc-eQTL 2.18e-01 0.0904 0.073 0.648 gdT L2
ENSG00000074527 NTN4 620638 sc-eQTL 3.48e-01 -0.0791 0.084 0.648 gdT L2
ENSG00000111142 METAP2 938270 sc-eQTL 8.93e-01 0.0143 0.105 0.648 gdT L2
ENSG00000111144 LTA4H 368270 sc-eQTL 4.74e-01 -0.0787 0.11 0.648 gdT L2
ENSG00000111145 ELK3 217415 sc-eQTL 3.63e-01 0.0925 0.101 0.648 gdT L2
ENSG00000139343 SNRPF 552862 sc-eQTL 3.67e-01 0.0885 0.0978 0.648 gdT L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 9.18e-01 0.0112 0.108 0.648 gdT L2
ENSG00000188596 CFAP54 -77781 sc-eQTL 5.29e-01 0.0598 0.0948 0.648 gdT L2
ENSG00000059758 CDK17 11310 sc-eQTL 8.23e-01 -0.0196 0.0874 0.667 intMono L2
ENSG00000084110 HAL 415425 sc-eQTL 5.68e-01 0.0506 0.0883 0.667 intMono L2
ENSG00000111142 METAP2 938270 sc-eQTL 6.79e-02 -0.182 0.0993 0.667 intMono L2
ENSG00000111144 LTA4H 368270 sc-eQTL 5.96e-01 -0.0481 0.0906 0.667 intMono L2
ENSG00000111145 ELK3 217415 sc-eQTL 7.16e-01 0.0295 0.0807 0.667 intMono L2
ENSG00000139343 SNRPF 552862 sc-eQTL 8.23e-02 -0.15 0.0857 0.667 intMono L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 6.74e-01 -0.0377 0.0897 0.667 intMono L2
ENSG00000257715 AC007298.1 386467 sc-eQTL 8.92e-01 -0.0123 0.0902 0.667 intMono L2
ENSG00000059758 CDK17 11310 sc-eQTL 9.20e-01 0.00725 0.0725 0.667 ncMono L2
ENSG00000084110 HAL 415425 sc-eQTL 1.39e-01 -0.119 0.0805 0.667 ncMono L2
ENSG00000111142 METAP2 938270 sc-eQTL 2.82e-01 -0.105 0.0976 0.667 ncMono L2
ENSG00000111144 LTA4H 368270 sc-eQTL 3.95e-01 -0.0768 0.0901 0.667 ncMono L2
ENSG00000111145 ELK3 217415 sc-eQTL 7.26e-01 0.0271 0.0774 0.667 ncMono L2
ENSG00000139343 SNRPF 552862 sc-eQTL 5.93e-01 -0.0423 0.0791 0.667 ncMono L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 4.00e-02 -0.172 0.0831 0.667 ncMono L2
ENSG00000257715 AC007298.1 386467 sc-eQTL 5.09e-01 -0.0633 0.0958 0.667 ncMono L2
ENSG00000059758 CDK17 11310 sc-eQTL 1.11e-02 -0.23 0.0894 0.658 pDC L2
ENSG00000084110 HAL 415425 sc-eQTL 7.46e-01 0.025 0.0771 0.658 pDC L2
ENSG00000111142 METAP2 938270 sc-eQTL 2.96e-01 -0.109 0.104 0.658 pDC L2
ENSG00000111144 LTA4H 368270 sc-eQTL 5.23e-01 -0.0551 0.0862 0.658 pDC L2
ENSG00000111145 ELK3 217415 sc-eQTL 7.50e-01 0.0337 0.106 0.658 pDC L2
ENSG00000139343 SNRPF 552862 sc-eQTL 9.43e-01 0.00663 0.0921 0.658 pDC L2
ENSG00000139350 NEDD1 -495433 sc-eQTL 5.55e-01 0.06 0.101 0.658 pDC L2
ENSG00000257715 AC007298.1 386467 sc-eQTL 4.67e-01 0.0635 0.087 0.658 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 11310 sc-eQTL 4.85e-01 -0.0429 0.0614 0.669 B_Memory LOneK1K
ENSG00000111142 METAP2 938270 sc-eQTL 9.40e-01 -0.00645 0.0855 0.669 B_Memory LOneK1K
ENSG00000111144 LTA4H 368270 sc-eQTL 3.59e-01 -0.0585 0.0637 0.669 B_Memory LOneK1K
ENSG00000111145 ELK3 217415 sc-eQTL 4.63e-01 -0.0536 0.0729 0.669 B_Memory LOneK1K
ENSG00000136014 USP44 860314 sc-eQTL 3.49e-01 -0.0852 0.0908 0.669 B_Memory LOneK1K
ENSG00000139343 SNRPF 552862 sc-eQTL 5.54e-01 -0.0419 0.0707 0.669 B_Memory LOneK1K
ENSG00000139350 NEDD1 -495433 sc-eQTL 9.25e-01 -0.00871 0.0928 0.669 B_Memory LOneK1K
ENSG00000059758 CDK17 11310 sc-eQTL 4.77e-01 -0.0378 0.0531 0.669 B_Naive LOneK1K
ENSG00000111142 METAP2 938270 sc-eQTL 2.75e-01 0.0785 0.0718 0.669 B_Naive LOneK1K
ENSG00000111144 LTA4H 368270 sc-eQTL 3.34e-01 -0.0577 0.0595 0.669 B_Naive LOneK1K
ENSG00000111145 ELK3 217415 sc-eQTL 8.88e-01 -0.00958 0.0679 0.669 B_Naive LOneK1K
ENSG00000136014 USP44 860314 sc-eQTL 3.29e-01 -0.0811 0.0829 0.669 B_Naive LOneK1K
ENSG00000139343 SNRPF 552862 sc-eQTL 7.61e-01 0.0208 0.0684 0.669 B_Naive LOneK1K
ENSG00000139350 NEDD1 -495433 sc-eQTL 4.94e-01 0.062 0.0904 0.669 B_Naive LOneK1K
ENSG00000059758 CDK17 11310 sc-eQTL 1.04e-04 -0.239 0.0605 0.669 CD14_Mono LOneK1K
ENSG00000084110 HAL 415425 sc-eQTL 3.39e-01 -0.0725 0.0757 0.669 CD14_Mono LOneK1K
ENSG00000111142 METAP2 938270 sc-eQTL 2.82e-01 0.0769 0.0713 0.669 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 368270 sc-eQTL 3.10e-01 -0.0847 0.0831 0.669 CD14_Mono LOneK1K
ENSG00000111145 ELK3 217415 sc-eQTL 4.15e-01 0.0491 0.0601 0.669 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 552862 sc-eQTL 7.51e-01 -0.0184 0.0581 0.669 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -495433 sc-eQTL 6.47e-01 -0.0418 0.0911 0.669 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 386467 sc-eQTL 5.42e-01 0.0514 0.0843 0.669 CD14_Mono LOneK1K
ENSG00000059758 CDK17 11310 sc-eQTL 8.88e-01 0.00919 0.0652 0.668 CD16_Mono LOneK1K
ENSG00000084110 HAL 415425 sc-eQTL 4.56e-01 -0.0574 0.0769 0.668 CD16_Mono LOneK1K
ENSG00000111142 METAP2 938270 sc-eQTL 4.59e-02 -0.174 0.0866 0.668 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 368270 sc-eQTL 2.47e-01 -0.0988 0.0851 0.668 CD16_Mono LOneK1K
ENSG00000111145 ELK3 217415 sc-eQTL 6.84e-01 0.0257 0.0632 0.668 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 552862 sc-eQTL 4.78e-01 -0.0462 0.0651 0.668 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -495433 sc-eQTL 1.25e-01 -0.128 0.0831 0.668 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 386467 sc-eQTL 5.61e-01 -0.0515 0.0884 0.668 CD16_Mono LOneK1K
ENSG00000059758 CDK17 11310 sc-eQTL 1.04e-01 0.0726 0.0445 0.666 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 938270 sc-eQTL 7.61e-01 0.0208 0.0681 0.666 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 368270 sc-eQTL 7.30e-01 0.0269 0.0778 0.666 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 217415 sc-eQTL 4.21e-01 -0.0574 0.0712 0.666 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 552862 sc-eQTL 5.89e-02 -0.115 0.0605 0.666 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -495433 sc-eQTL 2.55e-01 -0.0865 0.0758 0.666 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000111145 ELK3 217415 eQTL 0.00156 -0.057 0.018 0.0 0.0 0.361
ENSG00000139350 NEDD1 -495433 eQTL 0.0289 -0.0547 0.025 0.0 0.0 0.361
ENSG00000188596 CFAP54 -77785 eQTL 0.0115 -0.0528 0.0209 0.0 0.0 0.361

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000111145 ELK3 217415 2.96e-06 3.66e-06 4.51e-07 1.97e-06 5.79e-07 7.74e-07 2.33e-06 8.47e-07 2.27e-06 1.45e-06 3.16e-06 1.86e-06 3.96e-06 1.41e-06 8.94e-07 1.93e-06 1.56e-06 2.19e-06 1.45e-06 1.28e-06 1.4e-06 3.2e-06 3.32e-06 1.62e-06 4.21e-06 1.26e-06 1.48e-06 1.79e-06 2.61e-06 2.94e-06 1.99e-06 4.33e-07 5.68e-07 1.33e-06 1.62e-06 9.54e-07 7.18e-07 4.52e-07 1.23e-06 3.65e-07 2.14e-07 3.56e-06 5.11e-07 1.99e-07 3.45e-07 3.61e-07 8.02e-07 2.22e-07 3.03e-07
ENSG00000188596 CFAP54 -77785 8.56e-06 1.18e-05 1.36e-06 5.82e-06 2.36e-06 4.23e-06 1.08e-05 2.19e-06 9.65e-06 5.36e-06 1.31e-05 5.73e-06 1.58e-05 3.68e-06 2.91e-06 6.36e-06 4.52e-06 7.6e-06 2.67e-06 2.84e-06 5.16e-06 9.58e-06 8.72e-06 3.38e-06 1.45e-05 3.89e-06 4.88e-06 4.25e-06 1.02e-05 9.18e-06 5.94e-06 8.89e-07 1.26e-06 3.12e-06 4.73e-06 2.65e-06 1.71e-06 1.95e-06 1.94e-06 9.84e-07 8.99e-07 1.29e-05 1.45e-06 1.64e-07 7.16e-07 1.77e-06 1.39e-06 6.7e-07 4.95e-07