logo

Genes within 1Mb (chr12:96410871:A:G):

View on , UCSC , GTEx , gnomAD

Immune cell-type specific single cell cis-eQTLs in OASIS
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 10391 sc-eQTL 1.38e-01 -0.0813 0.0545 0.761 B L1
ENSG00000111142 METAP2 937351 sc-eQTL 5.01e-01 0.0522 0.0775 0.761 B L1
ENSG00000111144 LTA4H 367351 sc-eQTL 5.98e-01 -0.036 0.068 0.761 B L1
ENSG00000111145 ELK3 216496 sc-eQTL 5.75e-01 -0.0407 0.0724 0.761 B L1
ENSG00000136014 USP44 859395 sc-eQTL 2.58e-01 -0.101 0.0891 0.761 B L1
ENSG00000139343 SNRPF 551943 sc-eQTL 3.42e-01 -0.0625 0.0657 0.761 B L1
ENSG00000139350 NEDD1 -496352 sc-eQTL 4.82e-01 0.0676 0.096 0.761 B L1
ENSG00000059758 CDK17 10391 sc-eQTL 1.65e-01 -0.0619 0.0444 0.761 CD4T L1
ENSG00000111142 METAP2 937351 sc-eQTL 9.01e-01 -0.00775 0.0623 0.761 CD4T L1
ENSG00000111144 LTA4H 367351 sc-eQTL 3.27e-01 -0.0601 0.0611 0.761 CD4T L1
ENSG00000111145 ELK3 216496 sc-eQTL 5.97e-01 -0.0351 0.0663 0.761 CD4T L1
ENSG00000136014 USP44 859395 sc-eQTL 7.54e-01 -0.0297 0.0947 0.761 CD4T L1
ENSG00000139343 SNRPF 551943 sc-eQTL 4.24e-01 -0.0464 0.0579 0.761 CD4T L1
ENSG00000139350 NEDD1 -496352 sc-eQTL 4.55e-01 0.0534 0.0714 0.761 CD4T L1
ENSG00000059758 CDK17 10391 sc-eQTL 2.04e-02 -0.105 0.0448 0.761 CD8T L1
ENSG00000111142 METAP2 937351 sc-eQTL 1.92e-01 0.0955 0.073 0.761 CD8T L1
ENSG00000111144 LTA4H 367351 sc-eQTL 9.67e-01 -0.00204 0.0488 0.761 CD8T L1
ENSG00000111145 ELK3 216496 sc-eQTL 5.04e-02 -0.143 0.0727 0.761 CD8T L1
ENSG00000136014 USP44 859395 sc-eQTL 9.69e-01 0.00327 0.0835 0.761 CD8T L1
ENSG00000139343 SNRPF 551943 sc-eQTL 4.22e-01 0.0483 0.06 0.761 CD8T L1
ENSG00000139350 NEDD1 -496352 sc-eQTL 8.58e-01 0.0143 0.0799 0.761 CD8T L1
ENSG00000059758 CDK17 10391 sc-eQTL 4.69e-02 -0.168 0.0841 0.759 DC L1
ENSG00000084110 HAL 414506 sc-eQTL 3.22e-01 -0.0958 0.0965 0.759 DC L1
ENSG00000111142 METAP2 937351 sc-eQTL 7.39e-01 -0.0355 0.107 0.759 DC L1
ENSG00000111144 LTA4H 367351 sc-eQTL 5.62e-01 -0.0459 0.079 0.759 DC L1
ENSG00000111145 ELK3 216496 sc-eQTL 2.29e-01 0.116 0.0965 0.759 DC L1
ENSG00000139343 SNRPF 551943 sc-eQTL 8.06e-01 -0.0198 0.0805 0.759 DC L1
ENSG00000139350 NEDD1 -496352 sc-eQTL 9.36e-01 -0.00837 0.103 0.759 DC L1
ENSG00000257715 AC007298.1 385548 sc-eQTL 9.87e-02 -0.154 0.0927 0.759 DC L1
ENSG00000059758 CDK17 10391 sc-eQTL 1.98e-02 -0.16 0.0682 0.761 Mono L1
ENSG00000084110 HAL 414506 sc-eQTL 3.00e-01 -0.0902 0.0868 0.761 Mono L1
ENSG00000111142 METAP2 937351 sc-eQTL 9.14e-01 0.00816 0.0751 0.761 Mono L1
ENSG00000111144 LTA4H 367351 sc-eQTL 3.53e-01 -0.0913 0.098 0.761 Mono L1
ENSG00000111145 ELK3 216496 sc-eQTL 9.77e-01 -0.00188 0.066 0.761 Mono L1
ENSG00000139343 SNRPF 551943 sc-eQTL 4.07e-01 -0.0515 0.0621 0.761 Mono L1
ENSG00000139350 NEDD1 -496352 sc-eQTL 1.58e-02 -0.229 0.0942 0.761 Mono L1
ENSG00000257715 AC007298.1 385548 sc-eQTL 8.63e-01 0.016 0.0925 0.761 Mono L1
ENSG00000059758 CDK17 10391 sc-eQTL 4.31e-01 0.0396 0.0502 0.76 NK L1
ENSG00000111142 METAP2 937351 sc-eQTL 7.12e-01 -0.0275 0.0744 0.76 NK L1
ENSG00000111144 LTA4H 367351 sc-eQTL 9.44e-01 -0.006 0.0854 0.76 NK L1
ENSG00000111145 ELK3 216496 sc-eQTL 4.51e-01 -0.0611 0.0809 0.76 NK L1
ENSG00000139343 SNRPF 551943 sc-eQTL 9.59e-02 -0.112 0.0667 0.76 NK L1
ENSG00000139350 NEDD1 -496352 sc-eQTL 3.45e-01 -0.0802 0.0848 0.76 NK L1
ENSG00000059758 CDK17 10391 sc-eQTL 8.03e-01 0.0107 0.0426 0.761 Other_T L1
ENSG00000074527 NTN4 619719 sc-eQTL 5.26e-01 -0.05 0.0787 0.761 Other_T L1
ENSG00000111142 METAP2 937351 sc-eQTL 8.98e-01 0.0104 0.0813 0.761 Other_T L1
ENSG00000111144 LTA4H 367351 sc-eQTL 4.41e-01 -0.0687 0.0889 0.761 Other_T L1
ENSG00000111145 ELK3 216496 sc-eQTL 9.98e-01 -0.000181 0.0695 0.761 Other_T L1
ENSG00000139343 SNRPF 551943 sc-eQTL 9.91e-01 -0.000761 0.0645 0.761 Other_T L1
ENSG00000139350 NEDD1 -496352 sc-eQTL 3.80e-01 -0.0864 0.0981 0.761 Other_T L1
ENSG00000188596 CFAP54 -78700 sc-eQTL 4.93e-01 0.0698 0.102 0.761 Other_T L1
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 10391 sc-eQTL 9.72e-01 -0.00342 0.0966 0.763 B_Activated L2
ENSG00000111142 METAP2 937351 sc-eQTL 3.09e-01 0.124 0.121 0.763 B_Activated L2
ENSG00000111144 LTA4H 367351 sc-eQTL 5.63e-01 -0.0633 0.109 0.763 B_Activated L2
ENSG00000111145 ELK3 216496 sc-eQTL 7.45e-01 0.0377 0.116 0.763 B_Activated L2
ENSG00000136014 USP44 859395 sc-eQTL 1.42e-01 -0.13 0.0884 0.763 B_Activated L2
ENSG00000139343 SNRPF 551943 sc-eQTL 4.90e-01 0.0755 0.109 0.763 B_Activated L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 4.28e-01 0.0907 0.114 0.763 B_Activated L2
ENSG00000059758 CDK17 10391 sc-eQTL 6.94e-01 -0.0331 0.084 0.76 B_Intermediate L2
ENSG00000111142 METAP2 937351 sc-eQTL 3.62e-01 -0.0878 0.0961 0.76 B_Intermediate L2
ENSG00000111144 LTA4H 367351 sc-eQTL 2.65e-01 -0.0906 0.0811 0.76 B_Intermediate L2
ENSG00000111145 ELK3 216496 sc-eQTL 5.23e-01 -0.0586 0.0916 0.76 B_Intermediate L2
ENSG00000136014 USP44 859395 sc-eQTL 2.96e-01 -0.113 0.108 0.76 B_Intermediate L2
ENSG00000139343 SNRPF 551943 sc-eQTL 3.00e-01 -0.0947 0.0911 0.76 B_Intermediate L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 4.03e-01 -0.0896 0.107 0.76 B_Intermediate L2
ENSG00000059758 CDK17 10391 sc-eQTL 2.37e-02 -0.182 0.0801 0.763 B_Memory L2
ENSG00000111142 METAP2 937351 sc-eQTL 3.05e-01 0.108 0.105 0.763 B_Memory L2
ENSG00000111144 LTA4H 367351 sc-eQTL 1.68e-01 -0.129 0.0931 0.763 B_Memory L2
ENSG00000111145 ELK3 216496 sc-eQTL 4.18e-01 -0.0746 0.0918 0.763 B_Memory L2
ENSG00000136014 USP44 859395 sc-eQTL 7.48e-01 0.0325 0.101 0.763 B_Memory L2
ENSG00000139343 SNRPF 551943 sc-eQTL 9.73e-01 0.00325 0.0975 0.763 B_Memory L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 5.28e-01 0.0681 0.108 0.763 B_Memory L2
ENSG00000059758 CDK17 10391 sc-eQTL 6.11e-01 -0.0347 0.068 0.761 B_Naive1 L2
ENSG00000111142 METAP2 937351 sc-eQTL 5.71e-01 0.05 0.088 0.761 B_Naive1 L2
ENSG00000111144 LTA4H 367351 sc-eQTL 5.18e-01 -0.0461 0.0712 0.761 B_Naive1 L2
ENSG00000111145 ELK3 216496 sc-eQTL 5.81e-01 -0.0465 0.0842 0.761 B_Naive1 L2
ENSG00000136014 USP44 859395 sc-eQTL 9.67e-01 -0.00442 0.106 0.761 B_Naive1 L2
ENSG00000139343 SNRPF 551943 sc-eQTL 8.21e-01 0.0186 0.082 0.761 B_Naive1 L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 2.92e-01 0.111 0.105 0.761 B_Naive1 L2
ENSG00000059758 CDK17 10391 sc-eQTL 5.26e-01 -0.0543 0.0855 0.762 B_Naive2 L2
ENSG00000111142 METAP2 937351 sc-eQTL 4.40e-01 0.0799 0.103 0.762 B_Naive2 L2
ENSG00000111144 LTA4H 367351 sc-eQTL 3.96e-01 -0.0688 0.081 0.762 B_Naive2 L2
ENSG00000111145 ELK3 216496 sc-eQTL 9.42e-01 -0.00699 0.0956 0.762 B_Naive2 L2
ENSG00000136014 USP44 859395 sc-eQTL 6.83e-01 -0.0423 0.103 0.762 B_Naive2 L2
ENSG00000139343 SNRPF 551943 sc-eQTL 9.28e-01 0.00863 0.095 0.762 B_Naive2 L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 2.68e-01 -0.125 0.113 0.762 B_Naive2 L2
ENSG00000059758 CDK17 10391 sc-eQTL 9.70e-02 -0.132 0.0792 0.752 CD4_CTL L2
ENSG00000111142 METAP2 937351 sc-eQTL 9.65e-01 -0.00494 0.114 0.752 CD4_CTL L2
ENSG00000111144 LTA4H 367351 sc-eQTL 3.16e-01 -0.113 0.112 0.752 CD4_CTL L2
ENSG00000111145 ELK3 216496 sc-eQTL 3.96e-02 0.233 0.113 0.752 CD4_CTL L2
ENSG00000136014 USP44 859395 sc-eQTL 2.02e-01 -0.116 0.0905 0.752 CD4_CTL L2
ENSG00000139343 SNRPF 551943 sc-eQTL 6.05e-01 -0.0513 0.0989 0.752 CD4_CTL L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 1.86e-01 -0.151 0.114 0.752 CD4_CTL L2
ENSG00000059758 CDK17 10391 sc-eQTL 2.13e-01 -0.0608 0.0487 0.761 CD4_Naive L2
ENSG00000111142 METAP2 937351 sc-eQTL 7.86e-01 0.0191 0.0704 0.761 CD4_Naive L2
ENSG00000111144 LTA4H 367351 sc-eQTL 2.05e-01 -0.0895 0.0704 0.761 CD4_Naive L2
ENSG00000111145 ELK3 216496 sc-eQTL 5.62e-01 -0.041 0.0706 0.761 CD4_Naive L2
ENSG00000136014 USP44 859395 sc-eQTL 9.24e-01 0.00952 0.099 0.761 CD4_Naive L2
ENSG00000139343 SNRPF 551943 sc-eQTL 4.46e-01 -0.0478 0.0627 0.761 CD4_Naive L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 6.08e-01 0.0397 0.0772 0.761 CD4_Naive L2
ENSG00000059758 CDK17 10391 sc-eQTL 3.12e-01 -0.0482 0.0476 0.761 CD4_TCM L2
ENSG00000111142 METAP2 937351 sc-eQTL 2.12e-01 -0.101 0.0809 0.761 CD4_TCM L2
ENSG00000111144 LTA4H 367351 sc-eQTL 7.00e-01 0.0312 0.0808 0.761 CD4_TCM L2
ENSG00000111145 ELK3 216496 sc-eQTL 1.33e-01 -0.119 0.0791 0.761 CD4_TCM L2
ENSG00000136014 USP44 859395 sc-eQTL 7.06e-01 0.0415 0.11 0.761 CD4_TCM L2
ENSG00000139343 SNRPF 551943 sc-eQTL 8.95e-01 0.0086 0.0653 0.761 CD4_TCM L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 2.86e-01 0.0952 0.0889 0.761 CD4_TCM L2
ENSG00000059758 CDK17 10391 sc-eQTL 5.41e-01 0.0362 0.0591 0.761 CD4_TEM L2
ENSG00000111142 METAP2 937351 sc-eQTL 1.50e-01 0.142 0.0984 0.761 CD4_TEM L2
ENSG00000111144 LTA4H 367351 sc-eQTL 5.60e-01 -0.0533 0.0913 0.761 CD4_TEM L2
ENSG00000111145 ELK3 216496 sc-eQTL 6.81e-01 0.0349 0.0848 0.761 CD4_TEM L2
ENSG00000136014 USP44 859395 sc-eQTL 6.76e-01 0.0436 0.104 0.761 CD4_TEM L2
ENSG00000139343 SNRPF 551943 sc-eQTL 5.99e-01 -0.0468 0.0888 0.761 CD4_TEM L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 7.80e-01 -0.0294 0.105 0.761 CD4_TEM L2
ENSG00000059758 CDK17 10391 sc-eQTL 5.18e-01 -0.0373 0.0576 0.761 CD8_CTL L2
ENSG00000111142 METAP2 937351 sc-eQTL 2.07e-01 0.126 0.0994 0.761 CD8_CTL L2
ENSG00000111144 LTA4H 367351 sc-eQTL 5.47e-01 -0.0628 0.104 0.761 CD8_CTL L2
ENSG00000111145 ELK3 216496 sc-eQTL 6.87e-01 0.0383 0.0948 0.761 CD8_CTL L2
ENSG00000136014 USP44 859395 sc-eQTL 5.66e-01 -0.0607 0.106 0.761 CD8_CTL L2
ENSG00000139343 SNRPF 551943 sc-eQTL 7.32e-01 0.0299 0.0872 0.761 CD8_CTL L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 6.83e-01 -0.04 0.0978 0.761 CD8_CTL L2
ENSG00000059758 CDK17 10391 sc-eQTL 2.70e-02 -0.15 0.0674 0.761 CD8_Naive L2
ENSG00000111142 METAP2 937351 sc-eQTL 9.32e-01 -0.00778 0.0906 0.761 CD8_Naive L2
ENSG00000111144 LTA4H 367351 sc-eQTL 7.19e-01 0.0294 0.0817 0.761 CD8_Naive L2
ENSG00000111145 ELK3 216496 sc-eQTL 4.59e-02 -0.172 0.0856 0.761 CD8_Naive L2
ENSG00000136014 USP44 859395 sc-eQTL 8.72e-01 0.0146 0.0907 0.761 CD8_Naive L2
ENSG00000139343 SNRPF 551943 sc-eQTL 9.22e-01 -0.00757 0.0777 0.761 CD8_Naive L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 7.08e-01 0.0347 0.0925 0.761 CD8_Naive L2
ENSG00000059758 CDK17 10391 sc-eQTL 7.36e-01 -0.0247 0.0733 0.757 CD8_TCM L2
ENSG00000111142 METAP2 937351 sc-eQTL 1.89e-01 0.143 0.109 0.757 CD8_TCM L2
ENSG00000111144 LTA4H 367351 sc-eQTL 9.45e-02 0.18 0.107 0.757 CD8_TCM L2
ENSG00000111145 ELK3 216496 sc-eQTL 1.55e-01 -0.13 0.0907 0.757 CD8_TCM L2
ENSG00000136014 USP44 859395 sc-eQTL 5.57e-01 0.058 0.0987 0.757 CD8_TCM L2
ENSG00000139343 SNRPF 551943 sc-eQTL 8.98e-01 0.0134 0.105 0.757 CD8_TCM L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 7.84e-01 -0.0283 0.103 0.757 CD8_TCM L2
ENSG00000059758 CDK17 10391 sc-eQTL 7.64e-01 -0.0283 0.0944 0.767 CD8_TEM L2
ENSG00000111142 METAP2 937351 sc-eQTL 1.40e-01 0.163 0.11 0.767 CD8_TEM L2
ENSG00000111144 LTA4H 367351 sc-eQTL 8.89e-01 0.0162 0.116 0.767 CD8_TEM L2
ENSG00000111145 ELK3 216496 sc-eQTL 9.89e-01 0.00151 0.114 0.767 CD8_TEM L2
ENSG00000136014 USP44 859395 sc-eQTL 6.41e-02 -0.178 0.0959 0.767 CD8_TEM L2
ENSG00000139343 SNRPF 551943 sc-eQTL 4.85e-01 0.0737 0.105 0.767 CD8_TEM L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 4.09e-01 -0.0947 0.114 0.767 CD8_TEM L2
ENSG00000059758 CDK17 10391 sc-eQTL 2.55e-01 -0.0698 0.0611 0.758 MAIT L2
ENSG00000074527 NTN4 619719 sc-eQTL 8.87e-01 0.0117 0.0826 0.758 MAIT L2
ENSG00000111142 METAP2 937351 sc-eQTL 2.92e-01 0.11 0.104 0.758 MAIT L2
ENSG00000111144 LTA4H 367351 sc-eQTL 5.46e-01 0.0572 0.0946 0.758 MAIT L2
ENSG00000111145 ELK3 216496 sc-eQTL 6.17e-01 -0.0398 0.0795 0.758 MAIT L2
ENSG00000139343 SNRPF 551943 sc-eQTL 6.25e-01 -0.0451 0.0921 0.758 MAIT L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 5.94e-01 0.0552 0.103 0.758 MAIT L2
ENSG00000188596 CFAP54 -78700 sc-eQTL 7.04e-01 -0.039 0.102 0.758 MAIT L2
ENSG00000059758 CDK17 10391 sc-eQTL 1.38e-01 0.0955 0.0641 0.756 NK_CD56bright L2
ENSG00000111142 METAP2 937351 sc-eQTL 7.82e-01 0.0301 0.109 0.756 NK_CD56bright L2
ENSG00000111144 LTA4H 367351 sc-eQTL 4.34e-01 0.0747 0.0953 0.756 NK_CD56bright L2
ENSG00000111145 ELK3 216496 sc-eQTL 1.55e-01 0.144 0.101 0.756 NK_CD56bright L2
ENSG00000139343 SNRPF 551943 sc-eQTL 4.26e-01 -0.0843 0.106 0.756 NK_CD56bright L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 4.89e-01 -0.0739 0.107 0.756 NK_CD56bright L2
ENSG00000059758 CDK17 10391 sc-eQTL 2.22e-01 0.0663 0.0541 0.759 NK_CD56dim L2
ENSG00000111142 METAP2 937351 sc-eQTL 7.46e-01 -0.0308 0.0951 0.759 NK_CD56dim L2
ENSG00000111144 LTA4H 367351 sc-eQTL 7.67e-01 -0.0291 0.0981 0.759 NK_CD56dim L2
ENSG00000111145 ELK3 216496 sc-eQTL 8.75e-02 -0.148 0.0862 0.759 NK_CD56dim L2
ENSG00000139343 SNRPF 551943 sc-eQTL 1.68e-01 -0.114 0.0823 0.759 NK_CD56dim L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 7.95e-01 0.0247 0.0952 0.759 NK_CD56dim L2
ENSG00000059758 CDK17 10391 sc-eQTL 5.89e-02 -0.16 0.0843 0.758 NK_HLA L2
ENSG00000111142 METAP2 937351 sc-eQTL 7.26e-01 -0.0377 0.107 0.758 NK_HLA L2
ENSG00000111144 LTA4H 367351 sc-eQTL 2.24e-01 -0.135 0.111 0.758 NK_HLA L2
ENSG00000111145 ELK3 216496 sc-eQTL 9.60e-01 -0.00524 0.104 0.758 NK_HLA L2
ENSG00000139343 SNRPF 551943 sc-eQTL 2.35e-01 -0.128 0.107 0.758 NK_HLA L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 6.69e-02 -0.186 0.101 0.758 NK_HLA L2
ENSG00000059758 CDK17 10391 sc-eQTL 6.54e-01 0.0267 0.0595 0.759 NK_cytokine L2
ENSG00000111142 METAP2 937351 sc-eQTL 7.55e-01 0.0309 0.0988 0.759 NK_cytokine L2
ENSG00000111144 LTA4H 367351 sc-eQTL 7.45e-01 -0.0328 0.101 0.759 NK_cytokine L2
ENSG00000111145 ELK3 216496 sc-eQTL 8.81e-01 0.0144 0.0963 0.759 NK_cytokine L2
ENSG00000139343 SNRPF 551943 sc-eQTL 4.16e-01 -0.0664 0.0815 0.759 NK_cytokine L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 5.66e-01 -0.058 0.101 0.759 NK_cytokine L2
ENSG00000059758 CDK17 10391 sc-eQTL 1.87e-01 -0.159 0.12 0.77 PB L2
ENSG00000111142 METAP2 937351 sc-eQTL 7.77e-02 0.248 0.139 0.77 PB L2
ENSG00000111144 LTA4H 367351 sc-eQTL 6.45e-01 -0.0492 0.107 0.77 PB L2
ENSG00000111145 ELK3 216496 sc-eQTL 7.62e-01 -0.0415 0.137 0.77 PB L2
ENSG00000136014 USP44 859395 sc-eQTL 9.55e-01 0.00722 0.127 0.77 PB L2
ENSG00000139343 SNRPF 551943 sc-eQTL 9.69e-01 0.00515 0.133 0.77 PB L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 2.52e-01 0.182 0.158 0.77 PB L2
ENSG00000059758 CDK17 10391 sc-eQTL 9.37e-01 0.00535 0.0671 0.759 Pro_T L2
ENSG00000074527 NTN4 619719 sc-eQTL 2.83e-01 -0.081 0.0752 0.759 Pro_T L2
ENSG00000111142 METAP2 937351 sc-eQTL 7.33e-01 -0.0304 0.089 0.759 Pro_T L2
ENSG00000111144 LTA4H 367351 sc-eQTL 3.94e-01 -0.0756 0.0885 0.759 Pro_T L2
ENSG00000111145 ELK3 216496 sc-eQTL 1.36e-01 -0.16 0.107 0.759 Pro_T L2
ENSG00000139343 SNRPF 551943 sc-eQTL 1.76e-01 0.0914 0.0673 0.759 Pro_T L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 7.13e-01 -0.0361 0.0982 0.759 Pro_T L2
ENSG00000188596 CFAP54 -78700 sc-eQTL 1.56e-01 0.113 0.079 0.759 Pro_T L2
ENSG00000059758 CDK17 10391 sc-eQTL 6.59e-01 -0.033 0.0747 0.761 Treg L2
ENSG00000111142 METAP2 937351 sc-eQTL 8.61e-01 0.0179 0.102 0.761 Treg L2
ENSG00000111144 LTA4H 367351 sc-eQTL 6.80e-01 0.039 0.0946 0.761 Treg L2
ENSG00000111145 ELK3 216496 sc-eQTL 1.39e-01 -0.127 0.0853 0.761 Treg L2
ENSG00000136014 USP44 859395 sc-eQTL 9.93e-01 0.000892 0.0963 0.761 Treg L2
ENSG00000139343 SNRPF 551943 sc-eQTL 7.79e-01 0.0279 0.0993 0.761 Treg L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 9.02e-01 0.0137 0.111 0.761 Treg L2
ENSG00000059758 CDK17 10391 sc-eQTL 2.29e-01 -0.108 0.0897 0.751 cDC L2
ENSG00000084110 HAL 414506 sc-eQTL 8.99e-01 0.0118 0.0936 0.751 cDC L2
ENSG00000111142 METAP2 937351 sc-eQTL 2.07e-01 0.143 0.112 0.751 cDC L2
ENSG00000111144 LTA4H 367351 sc-eQTL 9.23e-01 -0.00773 0.0802 0.751 cDC L2
ENSG00000111145 ELK3 216496 sc-eQTL 3.55e-01 0.0979 0.106 0.751 cDC L2
ENSG00000139343 SNRPF 551943 sc-eQTL 1.28e-01 -0.135 0.0881 0.751 cDC L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 9.86e-01 -0.00184 0.108 0.751 cDC L2
ENSG00000257715 AC007298.1 385548 sc-eQTL 3.74e-01 -0.081 0.0908 0.751 cDC L2
ENSG00000059758 CDK17 10391 sc-eQTL 3.07e-05 -0.323 0.0757 0.761 cMono_IL1B L2
ENSG00000084110 HAL 414506 sc-eQTL 6.23e-01 -0.0423 0.086 0.761 cMono_IL1B L2
ENSG00000111142 METAP2 937351 sc-eQTL 4.22e-01 0.0717 0.0891 0.761 cMono_IL1B L2
ENSG00000111144 LTA4H 367351 sc-eQTL 3.44e-01 -0.0881 0.0928 0.761 cMono_IL1B L2
ENSG00000111145 ELK3 216496 sc-eQTL 6.35e-01 -0.034 0.0716 0.761 cMono_IL1B L2
ENSG00000139343 SNRPF 551943 sc-eQTL 8.15e-01 -0.0174 0.0739 0.761 cMono_IL1B L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 1.51e-01 -0.146 0.101 0.761 cMono_IL1B L2
ENSG00000257715 AC007298.1 385548 sc-eQTL 5.55e-01 0.0561 0.0949 0.761 cMono_IL1B L2
ENSG00000059758 CDK17 10391 sc-eQTL 9.58e-02 -0.15 0.0898 0.761 cMono_S100A L2
ENSG00000084110 HAL 414506 sc-eQTL 9.43e-01 -0.00729 0.101 0.761 cMono_S100A L2
ENSG00000111142 METAP2 937351 sc-eQTL 2.07e-01 0.129 0.102 0.761 cMono_S100A L2
ENSG00000111144 LTA4H 367351 sc-eQTL 5.45e-01 -0.0614 0.101 0.761 cMono_S100A L2
ENSG00000111145 ELK3 216496 sc-eQTL 4.79e-01 0.0584 0.0824 0.761 cMono_S100A L2
ENSG00000139343 SNRPF 551943 sc-eQTL 4.90e-01 -0.0563 0.0815 0.761 cMono_S100A L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 2.81e-01 -0.119 0.11 0.761 cMono_S100A L2
ENSG00000257715 AC007298.1 385548 sc-eQTL 7.32e-01 0.0355 0.104 0.761 cMono_S100A L2
ENSG00000059758 CDK17 10391 sc-eQTL 9.63e-02 0.143 0.0856 0.742 gdT L2
ENSG00000074527 NTN4 619719 sc-eQTL 4.63e-01 -0.0728 0.099 0.742 gdT L2
ENSG00000111142 METAP2 937351 sc-eQTL 5.16e-01 0.0806 0.124 0.742 gdT L2
ENSG00000111144 LTA4H 367351 sc-eQTL 1.90e-01 -0.169 0.129 0.742 gdT L2
ENSG00000111145 ELK3 216496 sc-eQTL 4.29e-01 0.0948 0.119 0.742 gdT L2
ENSG00000139343 SNRPF 551943 sc-eQTL 1.90e-01 0.151 0.115 0.742 gdT L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 5.35e-01 0.0793 0.127 0.742 gdT L2
ENSG00000188596 CFAP54 -78700 sc-eQTL 2.89e-01 0.118 0.111 0.742 gdT L2
ENSG00000059758 CDK17 10391 sc-eQTL 8.98e-01 -0.0128 0.0998 0.758 intMono L2
ENSG00000084110 HAL 414506 sc-eQTL 6.07e-01 -0.0519 0.101 0.758 intMono L2
ENSG00000111142 METAP2 937351 sc-eQTL 1.35e-01 -0.17 0.114 0.758 intMono L2
ENSG00000111144 LTA4H 367351 sc-eQTL 4.72e-01 -0.0746 0.103 0.758 intMono L2
ENSG00000111145 ELK3 216496 sc-eQTL 8.07e-01 0.0225 0.0922 0.758 intMono L2
ENSG00000139343 SNRPF 551943 sc-eQTL 2.08e-01 -0.124 0.0981 0.758 intMono L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 8.87e-02 -0.174 0.102 0.758 intMono L2
ENSG00000257715 AC007298.1 385548 sc-eQTL 7.78e-01 0.0291 0.103 0.758 intMono L2
ENSG00000059758 CDK17 10391 sc-eQTL 9.12e-01 0.00902 0.0815 0.76 ncMono L2
ENSG00000084110 HAL 414506 sc-eQTL 3.62e-01 -0.0831 0.0908 0.76 ncMono L2
ENSG00000111142 METAP2 937351 sc-eQTL 9.97e-01 -0.000457 0.11 0.76 ncMono L2
ENSG00000111144 LTA4H 367351 sc-eQTL 2.58e-01 -0.115 0.101 0.76 ncMono L2
ENSG00000111145 ELK3 216496 sc-eQTL 8.49e-01 0.0166 0.0871 0.76 ncMono L2
ENSG00000139343 SNRPF 551943 sc-eQTL 7.40e-01 0.0296 0.089 0.76 ncMono L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 2.41e-03 -0.284 0.0924 0.76 ncMono L2
ENSG00000257715 AC007298.1 385548 sc-eQTL 9.61e-01 0.00533 0.108 0.76 ncMono L2
ENSG00000059758 CDK17 10391 sc-eQTL 2.63e-02 -0.23 0.102 0.749 pDC L2
ENSG00000084110 HAL 414506 sc-eQTL 4.01e-01 -0.0739 0.0877 0.749 pDC L2
ENSG00000111142 METAP2 937351 sc-eQTL 4.01e-01 -0.0997 0.118 0.749 pDC L2
ENSG00000111144 LTA4H 367351 sc-eQTL 4.86e-01 -0.0685 0.0982 0.749 pDC L2
ENSG00000111145 ELK3 216496 sc-eQTL 3.36e-01 0.116 0.12 0.749 pDC L2
ENSG00000139343 SNRPF 551943 sc-eQTL 6.85e-01 0.0426 0.105 0.749 pDC L2
ENSG00000139350 NEDD1 -496352 sc-eQTL 7.38e-01 0.0388 0.116 0.749 pDC L2
ENSG00000257715 AC007298.1 385548 sc-eQTL 5.73e-01 0.0561 0.0992 0.749 pDC L2
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
MAF
Cell type
Cluster resolution
ENSG00000059758 CDK17 10391 sc-eQTL 1.47e-01 -0.102 0.0704 0.761 B_Memory LOneK1K
ENSG00000111142 METAP2 937351 sc-eQTL 5.66e-01 -0.0565 0.0983 0.761 B_Memory LOneK1K
ENSG00000111144 LTA4H 367351 sc-eQTL 2.88e-01 -0.078 0.0733 0.761 B_Memory LOneK1K
ENSG00000111145 ELK3 216496 sc-eQTL 4.44e-01 -0.0644 0.0838 0.761 B_Memory LOneK1K
ENSG00000136014 USP44 859395 sc-eQTL 2.05e-01 -0.133 0.104 0.761 B_Memory LOneK1K
ENSG00000139343 SNRPF 551943 sc-eQTL 4.51e-01 -0.0614 0.0813 0.761 B_Memory LOneK1K
ENSG00000139350 NEDD1 -496352 sc-eQTL 6.15e-01 0.0538 0.107 0.761 B_Memory LOneK1K
ENSG00000059758 CDK17 10391 sc-eQTL 2.85e-01 -0.0651 0.0608 0.761 B_Naive LOneK1K
ENSG00000111142 METAP2 937351 sc-eQTL 2.38e-01 0.0974 0.0822 0.761 B_Naive LOneK1K
ENSG00000111144 LTA4H 367351 sc-eQTL 3.22e-01 -0.0678 0.0683 0.761 B_Naive LOneK1K
ENSG00000111145 ELK3 216496 sc-eQTL 3.19e-01 -0.0776 0.0777 0.761 B_Naive LOneK1K
ENSG00000136014 USP44 859395 sc-eQTL 7.85e-01 -0.026 0.0952 0.761 B_Naive LOneK1K
ENSG00000139343 SNRPF 551943 sc-eQTL 9.09e-01 -0.00897 0.0784 0.761 B_Naive LOneK1K
ENSG00000139350 NEDD1 -496352 sc-eQTL 6.25e-01 0.0508 0.104 0.761 B_Naive LOneK1K
ENSG00000059758 CDK17 10391 sc-eQTL 7.08e-05 -0.281 0.0692 0.761 CD14_Mono LOneK1K
ENSG00000084110 HAL 414506 sc-eQTL 4.38e-01 -0.0676 0.0869 0.761 CD14_Mono LOneK1K
ENSG00000111142 METAP2 937351 sc-eQTL 3.84e-01 0.0714 0.0818 0.761 CD14_Mono LOneK1K
ENSG00000111144 LTA4H 367351 sc-eQTL 6.00e-01 -0.0502 0.0955 0.761 CD14_Mono LOneK1K
ENSG00000111145 ELK3 216496 sc-eQTL 9.40e-01 0.00521 0.0691 0.761 CD14_Mono LOneK1K
ENSG00000139343 SNRPF 551943 sc-eQTL 6.02e-01 -0.0348 0.0666 0.761 CD14_Mono LOneK1K
ENSG00000139350 NEDD1 -496352 sc-eQTL 1.58e-01 -0.147 0.104 0.761 CD14_Mono LOneK1K
ENSG00000257715 AC007298.1 385548 sc-eQTL 5.29e-01 0.061 0.0967 0.761 CD14_Mono LOneK1K
ENSG00000059758 CDK17 10391 sc-eQTL 8.10e-01 -0.0178 0.074 0.761 CD16_Mono LOneK1K
ENSG00000084110 HAL 414506 sc-eQTL 4.76e-01 -0.0623 0.0874 0.761 CD16_Mono LOneK1K
ENSG00000111142 METAP2 937351 sc-eQTL 1.18e-01 -0.155 0.0987 0.761 CD16_Mono LOneK1K
ENSG00000111144 LTA4H 367351 sc-eQTL 3.40e-01 -0.0926 0.0968 0.761 CD16_Mono LOneK1K
ENSG00000111145 ELK3 216496 sc-eQTL 9.49e-01 -0.00463 0.0718 0.761 CD16_Mono LOneK1K
ENSG00000139343 SNRPF 551943 sc-eQTL 6.34e-01 -0.0353 0.074 0.761 CD16_Mono LOneK1K
ENSG00000139350 NEDD1 -496352 sc-eQTL 2.47e-03 -0.285 0.0929 0.761 CD16_Mono LOneK1K
ENSG00000257715 AC007298.1 385548 sc-eQTL 7.99e-01 0.0257 0.1 0.761 CD16_Mono LOneK1K
ENSG00000059758 CDK17 10391 sc-eQTL 7.30e-01 0.0176 0.0509 0.759 NK_CD56dim LOneK1K
ENSG00000111142 METAP2 937351 sc-eQTL 6.43e-01 -0.0359 0.0774 0.759 NK_CD56dim LOneK1K
ENSG00000111144 LTA4H 367351 sc-eQTL 6.69e-01 -0.0379 0.0884 0.759 NK_CD56dim LOneK1K
ENSG00000111145 ELK3 216496 sc-eQTL 2.42e-01 -0.0947 0.0807 0.759 NK_CD56dim LOneK1K
ENSG00000139343 SNRPF 551943 sc-eQTL 7.54e-02 -0.123 0.0687 0.759 NK_CD56dim LOneK1K
ENSG00000139350 NEDD1 -496352 sc-eQTL 5.83e-01 -0.0475 0.0863 0.759 NK_CD56dim LOneK1K

Statistical fine-mapping results from Japan COVID-19 Task Force
(Shown only for PIP>0.001)
Gene ID
Gene Symbol
TSS Distance
Category
P-value
Effect Size
Effect Size (se)
PIP (SuSiE)
PIP (FINEMAP)
MAF
ENSG00000139350 NEDD1 -496352 eQTL 0.000732 -0.0937 0.0276 0.0 0.0 0.238
ENSG00000188596 CFAP54 -78704 eQTL 0.000388 -0.0821 0.0231 0.00106 0.0 0.238

Expression Modifier Score(EMS) for GTEx 49tissues
Gene ID
Gene Symbol
TSS Distance
Whole Blood
Muscle Skeletal
Liver
Brain Cerebellum
Prostate
Spleen
Skin Sun Exposed Lower leg
Artery Coronary
Esophagus Muscularis
Esophagus Gastroesophageal Junction
Artery Tibial
Heart Atrial Appendage
Nerve Tibial
Heart Left Ventricle
Adrenal Gland
Adipose Visceral Omentum
Pancreas
Lung
Pituitary
Brain Nucleus accumbens basal ganglia
Colon Transverse
Adipose Subcutaneous
Esophagus Mucosa
Brain Cortex
Thyroid
Stomach
Breast Mammary Tissue
Colon Sigmoid
Skin Not Sun Exposed Suprapubic
Testis
Artery Aorta
Brain Amygdala
Brain Anterior cingulate cortex BA24
Brain Caudate basal ganglia
Brain Cerebellar Hemisphere
Brain Frontal Cortex BA9
Brain Hippocampus
Brain Hypothalamus
Brain Putamen basal ganglia
Brain Spinal cord cervical c-1
Brain Substantia nigra
Cells Cultured fibroblasts
Cells EBV-transformed lymphocytes
Kidney Cortex
Minor Salivary Gland
Ovary
Small Intestine Terminal Ileum
Uterus
Vagina
ENSG00000059758 \N 10391 3.81e-05 3.34e-05 6.4e-06 1.56e-05 6.02e-06 1.46e-05 4.59e-05 4.65e-06 3.23e-05 1.58e-05 3.9e-05 1.79e-05 4.85e-05 1.43e-05 7.12e-06 1.98e-05 1.83e-05 2.61e-05 7.94e-06 6.77e-06 1.59e-05 3.46e-05 3.29e-05 9.15e-06 4.56e-05 8.28e-06 1.47e-05 1.31e-05 3.26e-05 2.57e-05 2.07e-05 1.64e-06 2.62e-06 7.1e-06 1.19e-05 5.85e-06 3.16e-06 3.11e-06 4.8e-06 3.36e-06 1.76e-06 3.89e-05 3.68e-06 3.62e-07 2.59e-06 3.93e-06 4.11e-06 1.57e-06 1.52e-06
ENSG00000188596 CFAP54 -78704 1.55e-05 1.6e-05 2.56e-06 1.12e-05 2.36e-06 6.64e-06 1.87e-05 2.37e-06 1.48e-05 6.68e-06 1.74e-05 7.55e-06 2.09e-05 5.63e-06 4.33e-06 8.94e-06 6.86e-06 1.16e-05 3.56e-06 3.86e-06 6.54e-06 1.27e-05 1.32e-05 4.21e-06 2.34e-05 4.3e-06 8.02e-06 5.35e-06 1.44e-05 1.18e-05 9.19e-06 1.27e-06 1.24e-06 3.7e-06 6.89e-06 2.82e-06 1.78e-06 2.04e-06 2.08e-06 1.45e-06 1.48e-06 1.67e-05 2.34e-06 1.9e-07 9.99e-07 2.45e-06 2.46e-06 7.24e-07 5.67e-07